NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10000056

Scaffold Ga0210403_10000056


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10000056 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124106
Total Scaffold Genes123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (77.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000290Metagenome / Metatranscriptome1362Y
F000386Metagenome / Metatranscriptome1203Y
F000407Metagenome / Metatranscriptome1172Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1000005621F000407GGAMLRLTTTAGFFGVLALAGCSGSDYAVRPVPRIVADTVGKPVSVLQEAFGEPRKIDKTSTKMIYVWFLAQKPKEGTASGFQGCEMEVSVDARSQRVLGYSLSNIGWATCGDVQRRIRVAQR
Ga0210403_1000005624F000290N/AMGYGAATLGVMSKSPNARRIGGPLSWGQLSRPDAEQCQRFLAESLSLLLGDVLRAILSDASPSVAAEESAVERYRNLADSLADGESRRRMGLGLTRAGLAKRCVTWLKLLLTPSPNAPASAAMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
Ga0210403_1000005636F000386N/AMTEMAPYLTLNVPPDEMVKYIQDLMTLPHGEIAAGSAMALAHRHWGGDTPLARAALLRWGALNLAFQDKRLQTWTVTRERDRIQVPAALVAAAGIAPLILDNERAVFDIPALLDATLDFQPPAGQA
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Institute for Fundamental Biomedical Research
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