| Basic Information | |
|---|---|
| Taxon OID | 3300019784 Open in IMG/M |
| Scaffold ID | Ga0181359_1002492 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5366 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F006543 | Metagenome / Metatranscriptome | 370 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F057320 | Metagenome / Metatranscriptome | 136 | Y |
| F086678 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181359_10024921 | F006543 | N/A | ERKMKKFSFAIDIVGDEIDSADVVATLTKALNDELPGDVHANVKPAGIKAFSEQGYKVWRARVTGVTAEAAGDAHDGKVEKETETVA |
| Ga0181359_10024923 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH |
| Ga0181359_10024924 | F057320 | AGGA | MSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENEQEAKFAHRVQSHLAQFDLAPMVYGDVGMIRRHDGELTAHGYLTEVARTMPECHDEDCDGECFQSECKNGTTISELVYDLGEHGLEYNDSHKGNFGYVRRKGSWVPVVIDLGIESFTEWDEDIYGQFDYGADEDVDCYGVCNCKECQKFREEE |
| Ga0181359_10024925 | F086678 | GAGG | MSKYYIKCGTLELIYSCDKAPRYAAMDAIWETNENDTLDEYIYLDERGYRDYKNADGKTCVLHTSHILKDAGWSIE |
| Ga0181359_10024926 | F008812 | AGGA | MIQWIGILITIVGLAYTGVKDYQKGDIKIPPLRHPSQQKQVLTKPTYPVQYCLMAYDPNIDKVFYLHENGQWHDYAPQQRRYPTTPQPYQDQGQAAVASSYGSQGTPQYYYGQSPQASANPIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |