NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10000182

Scaffold Ga0181565_10000182


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10000182 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43255
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017912Metagenome / Metatranscriptome238Y
F022760Metagenome / Metatranscriptome213Y
F026719Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1000018226F022760N/AMIKIEKIQDKHLDMLQVFCNKCKDLGYENNSSFRAMKLIWCKTQGEYWCAIRDEEIIAVAGCHPLPEVSNDAWRILFRGCELPHTDSFKGLGKGDWNSLTQREFIPLFIDWCPSDNLYMTTNLYNDHSNGKAARNHRLMGLLAKQGILEDKGEIELYYTKQNLWKLNIQEYKKRRERIQNKYVV
Ga0181565_1000018227F017912AGGAMWFNFAHLKEAKAKAGREDAGYWWHFRLAIGEFFFLLFITIGSLIHAIFPWVLDFKLLEWRINRLKTLKQKLPDDPQLRKVHFDE
Ga0181565_1000018229F026719N/AMLQSYDPYYKQVQYALSQVTRDSLLEYALATDAFVDISYKISFFKLPSTIQHFKPKGINCVCQLLRVTETGSKIHKDRNRYNEYENLYMPRQTVINFPLAPTASKTMFYDDNENFVCSVGYHNCGAILNTGGCFHNVEYNDKSPRIVFQLCFEEPYEEVCEIYNKKLKGLII
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