NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182024_10081567

Scaffold Ga0182024_10081567


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10081567 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4816
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000380Metagenome / Metatranscriptome1210Y
F002088Metagenome / Metatranscriptome595Y
F030501Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_100815672F000380AGGAGMPLQNQEQPTLNVKLVHFTKQNSPDEPVQVAFAVTDEQGKEEIITGEVPYSYDLFHLFQENGWLNIRRGVASIRETRSQRRAISA*
Ga0182024_100815673F002088AGGAGGMGHDIELAAGDICGDATGLRVRVEEVDLYDYVHFSVVEPKEAEDEVESGEMSHLAFVRRFTKMGPYIC*
Ga0182024_100815676F030501AGGAGMKIKQSIAIIVGAVLLAPGMAMAAPQCFQLFSGVYLRFEQPVTDSTVARNGRVWGALSSCDGLSSWPIVGNSYHSKANGLVVAFRAFTVDANTCGATDWIGTMSGKPLSGPFELFNQRTNFGNTGTWTEINCPIPPENGVKLPAGVDPLGNASK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.