NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10000217

Scaffold Ga0182013_10000217


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10000217 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76704
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (43.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000372Metagenome / Metatranscriptome1220Y
F000633Metagenome / Metatranscriptome971Y
F000985Metagenome / Metatranscriptome813Y
F012097Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0182013_1000021722F000985AGGMKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKESMAEAPKPSLAASAPPQPVRIPPVVAAQAAPAPARVAGWEDAAKRWP*
Ga0182013_1000021733F000372AGGAGVTDSALQSRVARRWTVIASGLLLLALGLVVIYTGPNAFYSPVALVVVSAIGLAALLLQVRFRRDLPIYSPLWLNVLGIVCATVSLFADLLRMPSRLLDLVAFVAVVCFGISGLLILHALRRRVQVPQSTETQ*
Ga0182013_1000021737F012097AGGCGGVNTLLGLLDEIPSPAEQPRATPIRDRSTRHSASPTALLHTEQIHALVHQLFFQQESKPVRHVGFVAIEACSETATLCLQVAKALAEEDRYDIGLFDAHPDSLPLQTKLQIPSPIGAELTWPIAPRLWLVPRQSWLPQGSAQRITEQNLSRLREIMTEFDFSILSCAPASWLTACIGQTCDGLVLVLTANKTRRLVAAQIKDHLTKARVPLLGTVLADRRFPVPQGLYRSL*
Ga0182013_1000021760F000633GGAMFFVNFVPEEGRWYCFAPTATGVQRIPVSMDASPFEAFTVAMDEQAKEVVN*
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