NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172373_10559452

Scaffold Ga0172373_10559452


Overview

Basic Information
Taxon OID3300013131 Open in IMG/M
Scaffold IDGa0172373_10559452 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → unclassified Opitutales → Opitutales bacterium TMED158(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004837Metagenome / Metatranscriptome421Y
F012449Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0172373_105594521F012449AGGMDTLIFPLLISSLTALAIAEYHVLPQWWYRTWFAKHKPFSCVTCLTFWIAVALTLPTCGWMLAPVYGLASAGLTVVILQLTNR*
Ga0172373_105594522F004837N/AMTQDEFLLATKHRHYWEQYQASLFMRLSPEAVGDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAQDNQHTVAHALTNPNPAP*

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