| Basic Information | |
|---|---|
| Taxon OID | 3300009450 Open in IMG/M |
| Scaffold ID | Ga0127391_1000386 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9298 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (10.53%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Falmouth, Massachusetts | |||||||
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F005775 | Metagenome | 390 | N |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F008615 | Metagenome / Metatranscriptome | 330 | N |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| F036110 | Metagenome / Metatranscriptome | 170 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0127391_10003861 | F036110 | N/A | MTEWVFFGATVLVSATGFLISREINRMGEEIKHLRQDVFRLSVDLAKLEERLDSII* |
| Ga0127391_100038610 | F010159 | N/A | MSWSIPALIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGMTRGTAEVEPNNLTISDGFLRPFETQQISFYTGTDFYPFIHHVDLKSMAYLNSWNAANPDLNFGLTVRYAQEIDNTPIARQVYITSTNDVTITHGLVVTTPRASANAIPVTNRTPLGLTYGGSGQVINTQTNYGPAGTPQQFMQPSPKDYQDFAFGLLPANADGQAFATPDPTNGLVDATTLLAAYGSVFIESAATHYYLCLHYALYTETVPESRG* |
| Ga0127391_100038611 | F000710 | N/A | MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIKFSSTTSAAPATALNAMQLRLTLTINNDVVIDDVCAYDLGAAATAGITSGFPHYIPFPRALTGQDTILLRVTNSSGASQLLNAVVFYKNEI* |
| Ga0127391_100038612 | F006697 | N/A | MANQVNKLAYVDSKLGVSLPGQQTTRVIYDSVNAVIGQQFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIIMNSATSNLTDHLNLNITVGNQVVLKDFDPSFNCSSRGLSFDRLHSGFNSTKNLEVRLLTDIVIPPQVNFKAELQLSNALIAAGDDVTIVFKGYGRIFSAGNSF* |
| Ga0127391_100038613 | F002259 | AGG | MGMSAQDKMLHVANRLGLTSLKDMQGTTRMVYDSNTAVATTHTFFKTASQRAFPLTNVGANGNQFQVDEALLVEKIGFFIPAAADGIAYTGLAGESVKFDLIVGNKTVLKDVACEFGGEQAFFNDGTLGSAVIDLEGVGILIPPQVEYYVVAKSYTTESRLADSIRLGCYLFGTGALLNFNTTI* |
| Ga0127391_100038618 | F005775 | AGGCGG | MKKQKPVYTKAQHQILNPAFVEKKIQLHKNVKWTTKDQRELFIMVSQSVTRYVPNSDHNNQMPMGFTNLQMGHYNKISIHTRDFHQLADVFQQIADTFKQNADKVDQVLTSEMDKYQTHHLKNLLNSDELP* |
| Ga0127391_100038619 | F008615 | N/A | MNDPKTFGGKMFKRFMQKGWRIQFTDEIQDRVAVIPPDRLNAKHLFAIYIPVIRHTWQPDLDREWYAAVVTKEQVHGPTFEVKAHPDQTAAWVAFATWIGDLVRNPQKFTA* |
| Ga0127391_10003865 | F003659 | N/A | MTAADVLGRFLIARENVPVYDLPNGNRIGEIKKGNSTAEVYSYVVRNGQTWWMFDYTIPGQSPGAYYVLQKDGRFSLSTAPGNVAVSANVLPAIDVFPASKNLLLYGALGLAALLILTRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |