NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066690_10020933

Scaffold Ga0066690_10020933


Overview

Basic Information
Taxon OID3300005177 Open in IMG/M
Scaffold IDGa0066690_10020933 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3643
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028131Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0066690_100209331F028131GAGVGDIAPHVRLVGTVSVRDTVPVNPLIAETFIVEVAEVPAWTAAGEVAVMLKSVTVNVAVVE*
Ga0066690_1002093310F028131N/ALAGTVSVKLTVPVNPLTAETVMVEVAETPALTAAGEVAAIVKSVTVNVAVVL*
Ga0066690_1002093313F028131AGGAVPELVTLVGVIAPQVRFAGTVSVKLTVPVNPFTAETVIVEVAEVPVWTAAGEVAAIVKSVTVN
Ga0066690_100209333F028131AGCAGLVTLAGEIAPHVRLAGTVSVRLTVPVKPFNAVTVIVEVAEVPAWTGAGEVAAIVKSVTAKVAVAEWDSVPLVPVIVTE*
Ga0066690_100209339F028131GGTGGMAPQVRFVGTVSVRLTVPVNPLRAVTVIVEVADTPALTAAGEVAEMLKSLTVKVAVVE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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