NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29588_100241

Scaffold B570J29588_100241


Overview

Basic Information
Taxon OID3300002273 Open in IMG/M
Scaffold IDB570J29588_100241 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4941
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F005585Metagenome / Metatranscriptome395Y

Sequences

Protein IDFamilyRBSSequence
B570J29588_10024111F000545N/AMRADAHPFKCSTCLAITPHIELHRYETSDIPEAPEEVWLIECQRCFLQRIIYPSDRVASKEDDISRCDKCGNWKMKSGKCRVCRLAAGFEQISVKYWTGNATMERPYDDGKAPLY*
B570J29588_1002418F005585N/AMNGSKVLETHYSTGASSMATRGTIYYAFSKSVRHSVFSSETHLTWRLLLSRPNSQEWWKVQSAKIRISISLDMPLSWVDYDFRHQKIGTTLSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINQFAGREKLXVXLPR*
B570J29588_1002419F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADTHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSEVANALGAEIIDELPLCSNGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMRIGSDGHWVFQK*
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