NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105670

Metagenome / Metatranscriptome Family F105670

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105670
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 148 residues
Representative Sequence SDGKYVFEKRDEQTVGKPKVKTAEGTLGADDLQHLKTILDDENLKKVVTPKPPDIPNNATIREIESVDAQIDHAGTMQRLTTIKERLKMGASEFGGATNGMDTYLDNAAPFQKTLNPLMKWFDGVEKKSKSDFKDSKPQYCAPMNIG
Number of Associated Samples 88
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 6.06 %
% of genes near scaffold ends (potentially truncated) 31.00 %
% of genes from short scaffolds (< 2000 bps) 27.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model