Metagenome / Metatranscriptome Family F101624

Basic Information
Family ID	F101624
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	58 residues
Representative Sequence	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEDLYQD
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.06 %
% of genes near scaffold ends (potentially truncated)	92.16 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Most Common Taxonomy
Group	Bacteria (56.863 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.549 % of family members)
Environment Ontology (ENVO)	Unclassified (21.569 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.902 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 18.60% Coil/Unstructured: 81.40%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00296	Bac_luciferase	44.12
PF02515	CoA_transf_3	4.90
PF13561	adh_short_C2	1.96
PF00378	ECH_1	1.96
PF00561	Abhydrolase_1	1.96
PF00118	Cpn60_TCP1	0.98
PF00117	GATase	0.98
PF13410	GST_C_2	0.98
PF04909	Amidohydro_2	0.98
PF14833	NAD_binding_11	0.98
PF13489	Methyltransf_23	0.98
PF01370	Epimerase	0.98
PF12146	Hydrolase_4	0.98
PF13358	DDE_3	0.98
PF00005	ABC_tran	0.98
PF10282	Lactonase	0.98
PF00685	Sulfotransfer_1	0.98
PF01408	GFO_IDH_MocA	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	44.12
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	4.90
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.86 %
Unclassified	root	N/A	43.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.86 %
Unclassified	root	N/A	43.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.86 %
Unclassified	root	N/A	43.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	17.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	8.82 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	7.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	7.84 %
unclassified Acetobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae	4.90 %
Belnapia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	1.96 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	7.84 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	4.90 %
unclassified Belnapia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia	0.98 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	7.84 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	4.90 %
Belnapia sp. F-4-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia → Belnapia sp. F-4-1	0.98 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10399701	Not Available	660	Open in IMG/M
3300002568\|C688J35102_119130170	Not Available	642	Open in IMG/M
3300004081\|Ga0063454_100237038	All Organisms → cellular organisms → Bacteria → Proteobacteria	1078	Open in IMG/M
3300004635\|Ga0062388_101936096	Not Available	608	Open in IMG/M
3300005172\|Ga0066683_10783489	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005175\|Ga0066673_10796508	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005177\|Ga0066690_11067017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	503	Open in IMG/M
3300005336\|Ga0070680_101941969	Not Available	510	Open in IMG/M
3300005353\|Ga0070669_100947283	Not Available	737	Open in IMG/M
3300005367\|Ga0070667_102035174	Not Available	541	Open in IMG/M
3300005436\|Ga0070713_100667957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300005454\|Ga0066687_10857926	Not Available	541	Open in IMG/M
3300005530\|Ga0070679_100561376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1085	Open in IMG/M
3300005560\|Ga0066670_10813526	Not Available	566	Open in IMG/M
3300005561\|Ga0066699_11150588	Not Available	534	Open in IMG/M
3300005921\|Ga0070766_11128234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	542	Open in IMG/M
3300006175\|Ga0070712_101136145	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300006176\|Ga0070765_100466126	Not Available	1185	Open in IMG/M
3300006804\|Ga0079221_10020570	All Organisms → cellular organisms → Bacteria	2678	Open in IMG/M
3300009088\|Ga0099830_10460512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1034	Open in IMG/M
3300009088\|Ga0099830_11604967	Not Available	542	Open in IMG/M
3300009101\|Ga0105247_10693901	Not Available	765	Open in IMG/M
3300009143\|Ga0099792_10373041	Not Available	867	Open in IMG/M
3300009143\|Ga0099792_10402842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	838	Open in IMG/M
3300009400\|Ga0116854_1114023	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300009660\|Ga0105854_1384295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	508	Open in IMG/M
3300009840\|Ga0126313_10421680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1061	Open in IMG/M
3300010341\|Ga0074045_10415148	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300010359\|Ga0126376_11319763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	742	Open in IMG/M
3300010361\|Ga0126378_12927209	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300010361\|Ga0126378_13264715	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300010366\|Ga0126379_12362063	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300010371\|Ga0134125_10754897	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300010373\|Ga0134128_10413529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	1506	Open in IMG/M
3300010376\|Ga0126381_104821051	Not Available	519	Open in IMG/M
3300012202\|Ga0137363_10799376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	800	Open in IMG/M
3300012207\|Ga0137381_11579025	Not Available	547	Open in IMG/M
3300012210\|Ga0137378_10358175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1355	Open in IMG/M
3300012210\|Ga0137378_11031309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	737	Open in IMG/M
3300012360\|Ga0137375_11397227	Not Available	521	Open in IMG/M
3300012948\|Ga0126375_10352721	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300012984\|Ga0164309_11168034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	644	Open in IMG/M
3300012985\|Ga0164308_10290443	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300013306\|Ga0163162_12339940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	614	Open in IMG/M
3300015264\|Ga0137403_10665787	Not Available	903	Open in IMG/M
3300015374\|Ga0132255_105564514	Not Available	533	Open in IMG/M
3300016357\|Ga0182032_10686974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300016387\|Ga0182040_10163249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1601	Open in IMG/M
3300016445\|Ga0182038_10796366	Not Available	828	Open in IMG/M
3300017939\|Ga0187775_10235182	Not Available	696	Open in IMG/M
3300017975\|Ga0187782_11284776	Not Available	574	Open in IMG/M
3300020006\|Ga0193735_1169176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	549	Open in IMG/M
3300020582\|Ga0210395_10061679	All Organisms → cellular organisms → Bacteria	2751	Open in IMG/M
3300020582\|Ga0210395_10653641	Not Available	788	Open in IMG/M
3300020583\|Ga0210401_10506186	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300021178\|Ga0210408_11087767	Not Available	615	Open in IMG/M
3300021384\|Ga0213876_10140670	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300021406\|Ga0210386_10573631	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300021420\|Ga0210394_11014088	Not Available	719	Open in IMG/M
3300021433\|Ga0210391_11242384	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300021475\|Ga0210392_11066909	Not Available	605	Open in IMG/M
3300021478\|Ga0210402_11453896	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300021479\|Ga0210410_11462895	Not Available	576	Open in IMG/M
3300022721\|Ga0242666_1010623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1579	Open in IMG/M
3300025931\|Ga0207644_10049933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2997	Open in IMG/M
3300026312\|Ga0209153_1060954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1354	Open in IMG/M
3300026312\|Ga0209153_1181004	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300026312\|Ga0209153_1251172	Not Available	570	Open in IMG/M
3300026318\|Ga0209471_1062119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1696	Open in IMG/M
3300026325\|Ga0209152_10244068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	668	Open in IMG/M
3300026547\|Ga0209156_10096142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1479	Open in IMG/M
3300026984\|Ga0208732_1005678	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300027050\|Ga0209325_1017249	Not Available	836	Open in IMG/M
3300027654\|Ga0209799_1079090	Not Available	742	Open in IMG/M
3300027783\|Ga0209448_10211552	Not Available	642	Open in IMG/M
3300027882\|Ga0209590_11033654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	511	Open in IMG/M
3300031231\|Ga0170824_118867879	Not Available	672	Open in IMG/M
3300031525\|Ga0302326_13241649	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031572\|Ga0318515_10645491	Not Available	561	Open in IMG/M
3300031718\|Ga0307474_10230783	Not Available	1414	Open in IMG/M
3300031719\|Ga0306917_10114267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1957	Open in IMG/M
3300031719\|Ga0306917_11467053	Not Available	525	Open in IMG/M
3300031748\|Ga0318492_10813357	Not Available	503	Open in IMG/M
3300031792\|Ga0318529_10051550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1774	Open in IMG/M
3300031819\|Ga0318568_10874472	Not Available	556	Open in IMG/M
3300031833\|Ga0310917_10189624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1371	Open in IMG/M
3300031859\|Ga0318527_10275240	Not Available	716	Open in IMG/M
3300031897\|Ga0318520_10513690	Not Available	740	Open in IMG/M
3300031912\|Ga0306921_10979908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	955	Open in IMG/M
3300031938\|Ga0308175_101895189	Not Available	668	Open in IMG/M
3300031945\|Ga0310913_10493550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia → unclassified Belnapia → Belnapia sp. F-4-1	869	Open in IMG/M
3300031962\|Ga0307479_10074158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3291	Open in IMG/M
3300032010\|Ga0318569_10143903	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300032041\|Ga0318549_10418872	Not Available	603	Open in IMG/M
3300032043\|Ga0318556_10147497	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300032076\|Ga0306924_10422667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1524	Open in IMG/M
3300032090\|Ga0318518_10530740	Not Available	602	Open in IMG/M
3300032205\|Ga0307472_102689098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	508	Open in IMG/M
3300032892\|Ga0335081_10382958	Not Available	1817	Open in IMG/M
3300032892\|Ga0335081_10480273	Not Available	1570	Open in IMG/M
3300033158\|Ga0335077_12001439	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300033829\|Ga0334854_187942	Not Available	505	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.14%
Host-Associated	Host-Associated	6.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.18%
Plants	Host-Associated → Plants	6.86%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Peat	Environmental → Terrestrial → Peat	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.61%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103997012	3300001661	Forest Soil	MKIVRFASAPDGGSQFVEVDLPIDNASTDAWGHTSRRSAVLPAQSTMVTEMPEGLYQ
C688J35102_1191301701	3300002568	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSATLPAQSMMVTEMP
Ga0063454_1002370381	3300004081	Soil	MKVVRFASAPDGGSQFVEVDMPTDNASTDAYGNTVHRSAVLPAQSTMVTEMPEGL*
Ga0062388_1019360961	3300004635	Bog Forest Soil	MVGSQFVEVDIPIDNTSTDAFGNTVRRSAILPALSAMVTEMPEGLYQDWHPASRRQLLVVLSG
Ga0066683_107834891	3300005172	Soil	MKIVRFASAPDGGSQFVEIDFPVDNASTDTWGHTARRSAILPAQSTMVTEMPEG
Ga0066673_107965082	3300005175	Soil	MKIVRFASASDDGGSQFVELDMPIDNASTDAFGNTVRRSAILPAQSTMVTEMPEGFYQDWHPA
Ga0066690_110670172	3300005177	Soil	MKIVRFASASDGGSQFVELDMPIDNASTDAFGNTVRRSAILPAQSTM
Ga0070680_1019419692	3300005336	Corn Rhizosphere	MKIVRFASAPDGGSQFVEINLPVDNASTDAWGHTSHRSAVLPAQSTM
Ga0070669_1009472831	3300005353	Switchgrass Rhizosphere	MKIVRFAAAPDGGSQFVEIDLPIDNASADAWGNTSHRSATLPAQSTMVTEMPEGLYQDWHPAS
Ga0070667_1020351742	3300005367	Switchgrass Rhizosphere	MKIIRFTAAPDGGSQFVEVDLPIDNASTDVWGHTARRSATLPAQSTMVTEMP
Ga0070713_1006679571	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKIVRFAAAPDGGSQFIEIDFPVDNASTDAWGHTARRSAIVPAQSTMVTEMPEGLYQDWH
Ga0066687_108579262	3300005454	Soil	MKIIRFATAPDGGSQFVEVDLPVDNASTDAWGHTARRSTILPAQSTMV
Ga0070679_1005613761	3300005530	Corn Rhizosphere	MKVVRFTAAPGGGSQFVEVDIPIANASTDEFGNTVHRSAVLPAQSTMVTDM
Ga0066670_108135263	3300005560	Soil	MKIVRFASASDDGGSQFVELDMPIDNASTDAYGNTVRRSAILPAQSTMVTEMPEGFYQDWHPASRRQLLIVLSGTL
Ga0066699_111505881	3300005561	Soil	MKIVRFAAAPDGGSQFVEIDFPVENASTDAWGHTARRSAVLPAQSTMITEMPEDLYQD
Ga0070766_111282342	3300005921	Soil	MKIVRFASASDGGSQFIEVDMPIDNASADTFGNTVRRSAILPAQSTMVTEMPEG
Ga0070712_1011361452	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKIVRFAAAPDGGSQFIEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTEMPEGLYQDWH
Ga0070765_1004661262	3300006176	Soil	MKVVRFATAPDGGSQFVEVDIPIDDASTDVFNNTVHRSAVVPAQSVMVTDMPEGLYQDWHPAS
Ga0079221_100205703	3300006804	Agricultural Soil	MKITRFAAGPDGGSKFVEVDLAIDNASTDAWGNTSRRSATLPAQSAMVTEMPE
Ga0099830_104605123	3300009088	Vadose Zone Soil	MKIVRFASASDGGSQFVEVDMPIDNASTDPFGNTVRRSAILPAQSTMVTE
Ga0099830_116049672	3300009088	Vadose Zone Soil	MKIVRFASASDGGSQFVEVDIPIDNASTDAFGKTVHRSAILPAQSTMVTEMP
Ga0105247_106939012	3300009101	Switchgrass Rhizosphere	MKIVRFASAPDGGSQFVEVDLPIDNASTDAWGHTSHRSATLPAQSAMVTEMPE
Ga0099792_103730412	3300009143	Vadose Zone Soil	LEEIMKLIRFVPAPDGGSQFVEVDIPIDNASTDAFGRVIRRSAIVTAQSTMLGEMPE
Ga0099792_104028421	3300009143	Vadose Zone Soil	MKVVHFASAPDGGSQFFEVDMPTDNVSTDAYGNTVQRSAVLPAQSTMVTEMPEGLYQDW
Ga0116854_11140231	3300009400	Soil	MKVIRFATTSDGGSQFVEVDIPIDNASTDVFNNTVHRSAVLPAQSVM
Ga0105854_13842952	3300009660	Permafrost Soil	MKIVRFASAPDGGSQFVEVDIPIDNASTDAFGNVVHRSGILPAQSTMLTEMLEGLY
Ga0126313_104216803	3300009840	Serpentine Soil	MKMVRFASTPDGGSQFIEVNLPVDNASTDAWSNTSRRSATLPAQSAMVTEMPEGLYQDWHPAS
Ga0074045_104151481	3300010341	Bog Forest Soil	MARYWSALMKLVRFASAPDGGSLFVEVDIPIDNASTDAFGNVVHRSGILPAQSTMLTEMPADFYQDWHPA
Ga0126376_113197633	3300010359	Tropical Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEGLYQDWYPASRRQLLIVLSGTL
Ga0126378_129272091	3300010361	Tropical Forest Soil	MKVVRFAAASDGGSQFVEVDIPIDNASTDAFNNTVHRSAVLPAQSAMVADMPEGLY
Ga0126378_132647152	3300010361	Tropical Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSTVLPAQSTMVTEMPEGLYQDWHPA
Ga0126379_123620632	3300010366	Tropical Forest Soil	MKIVRFASAPDGGSHFVEVDLSVDNASTDAWGHTSHRSAILPAQSTMVTEMPEGLYQDWH
Ga0134125_107548973	3300010371	Terrestrial Soil	MRIVRFTAAPDGGSQFIEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTEMPEGLYQDWHPASRR
Ga0134128_104135291	3300010373	Terrestrial Soil	MKIVRFAAAPDGGSQFIEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTAMPEGLYQDWHAASRRQLL
Ga0126381_1048210512	3300010376	Tropical Forest Soil	MKIVRSAAAPDGGWQFIEIDFPVDNASTDAWGHTARRSAVLPAESTMVTEMPEGLYQ
Ga0137363_107993761	3300012202	Vadose Zone Soil	MKIVRFASASDGGSQFVEADMPIDNASTDAFGNPVRRSAMLPAQSTMVTEM
Ga0137381_115790251	3300012207	Vadose Zone Soil	MKIVRFASAPDGGSQFVEIDFPVDNASTDTWGHTARRSATLPAQSTMVTEMPEGLYQDWHPASR
Ga0137378_103581753	3300012210	Vadose Zone Soil	MKIVRFATATDGGSEFVEIDFPVDNASTDTWGHTARRSAVLPAQSTMVTEMPEGLYQDWHPAS
Ga0137378_110313091	3300012210	Vadose Zone Soil	MKIVRFASASDGGSQFVEVDMPIDNASTDAFGNTVRRSAILPAQSTIVT
Ga0137375_113972271	3300012360	Vadose Zone Soil	MKIVRFASASDGGSQFVEVDVAIDNASTDVFGNTVHRSAILPAQSTMVTEMPEGLYQ
Ga0126375_103527212	3300012948	Tropical Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTEMPEGLYQEWHPASRRQLLIVLF
Ga0164309_111680342	3300012984	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPDDLYQDWHPASRRQLLIVISG
Ga0164308_102904433	3300012985	Soil	MKIVRFVSAPDGGSQFVEVNLPVENASADAWGNTSRRSETLPAQSAMVTEMPEGLYQDWHPASRRQLLV
Ga0163162_123399402	3300013306	Switchgrass Rhizosphere	MKIVRFASASNGGSQFVEVDIPIDNASTDAFGNTVHRSAILPAQSTMVTEMPEGLYQDWHPASRR
Ga0137403_106657871	3300015264	Vadose Zone Soil	MKITRFVPTPHGGSKFVEVDIPIDDASTDAFGNTVHRSAILPAQSAM
Ga0132255_1055645141	3300015374	Arabidopsis Rhizosphere	MKIVRFASTPDGGSQFIEVNLPVDNASTDAWSNTSRRSATLPAQSAMVTEMPEGLYQDWHPASRRQLLVVLSGT
Ga0182032_106869742	3300016357	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTACRSAVLPAQSTMVTEMPEDLYQD
Ga0182040_101632491	3300016387	Soil	MKIVRFATAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTEMPEGLYQDWHPA
Ga0182038_107963662	3300016445	Soil	MKIVRFATAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTEMPEGLYQEWHPA
Ga0187775_102351821	3300017939	Tropical Peatland	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTAHRSAVLPAQSTMVTEMPEGLVQDWHPASR
Ga0187782_112847761	3300017975	Tropical Peatland	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEDLYQD
Ga0193735_11691762	3300020006	Soil	MKVVRFASAPDGGSQFVEVDMPTDNASTDAYGNTVHRSAVLPAQSTMVTEMPEG
Ga0210395_100616791	3300020582	Soil	MKLVRFIPTSDGGSQFVDVDIPIDNAPTDAFGHVRRSATVTAQSTMLAEM
Ga0210395_106536411	3300020582	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARLSAVLPAQSTMVTEMPEGLYQEWHPASRRQLLIVLF
Ga0210401_105061861	3300020583	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDGWGHTARRSAVLPAESTMVTEMPEGLSPDWHPASR
Ga0210408_110877671	3300021178	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAESTMLTEMPEGL
Ga0213876_101406704	3300021384	Plant Roots	MKIVRFAAAPHGGSQFVEIDFPVDNASTDAWGHTARRSAVVPAESTMVTEMPEGLYQDWHPAS
Ga0210386_105736312	3300021406	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAESTMVTEMPEGLY
Ga0210394_110140883	3300021420	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAESTMVTEMPEGLSPDWHPASRRQC
Ga0210391_112423842	3300021433	Soil	MKVVRFATASDGGSQFAEVDIPIDNASTDVFNNTVHHSAVVPAQSVMVTDMPEGLYQD
Ga0210392_110669092	3300021475	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARLSAVLPAQSTMVTEM
Ga0210402_114538962	3300021478	Soil	MKIVRFASAPDGGSQFVEVNLPVDNASTDAWGHTSHRSAIVPAQSTMVTEMPEGLYQDWHPASRRQLLVV
Ga0210410_114628952	3300021479	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAESTMLTE
Ga0242666_10106231	3300022721	Soil	MKIVRFASASDGGSQFSEVDIAIDNASSDAFGNTVNRSAVLPAQST
Ga0207644_100499335	3300025931	Switchgrass Rhizosphere	MKIVRFASASNGGSQFVEVDIPIDNASTDAFGNTVHRSAILPAQSTMVTEMPEGLYQ
Ga0209153_10609541	3300026312	Soil	MKIVRFASASDGGSQFVEVDIPIDNVSTDAFANTVRRSAILPAQSTMVTE
Ga0209153_11810043	3300026312	Soil	MKVVRFASAPDGGSQFVEVDMPTDNASTDAYGNTVHRSAVLPAQSTMVTEMPEGL
Ga0209153_12511721	3300026312	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSATLPAQSMMVTEMPEGLYQDWHPASRRQLLVV
Ga0209471_10621191	3300026318	Soil	MKIVRFASASDGGSQFVEVDIPIDNVSTDAFGNTVRRSAILPAQSTMVTEMPEGF
Ga0209152_102440682	3300026325	Soil	MKVVRFASAPDGGSQFVEVDMPTDDASTDAYGNTVHRSAVLPAQSTMVTEMPEGLYQDWHPASRRQ
Ga0209156_100961421	3300026547	Soil	MKIVRFASASDGGSQFVEVDIPIDNVSTDAFGNTVRRSAILPAQSTM
Ga0208732_10056782	3300026984	Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARLSAVLPAQSTMVTEMPEGL
Ga0209325_10172492	3300027050	Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAESTMVT
Ga0209799_10790901	3300027654	Tropical Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDSASTDAWGHTARRSAVLPAQSTMVTEMPEDLYQDWHPASR
Ga0209448_102115522	3300027783	Bog Forest Soil	MKIARFASTSEGGSQFAEVDIPIDDASTDAFGNTVHRSAMLPAQSTMVTEMPDGFYQD
Ga0209590_110336541	3300027882	Vadose Zone Soil	MKIVRFASAPDGGSQFVEIDFPVDNASTDTWGHTARRSAILPAQSTMVTEMPEGLYQ
Ga0170824_1188678792	3300031231	Forest Soil	MKIVRFATAPDGGSQFVEVDFPIDNVSTDAWGHTAHRSAVLPAQSAMVTE
Ga0302326_132416492	3300031525	Palsa	MKLIRFASAPDGGSQFIEIDIPVDDASTDAFGNVVHRSGILPAQSTMLTEMPEGLYQDWHPASRRQL
Ga0318515_106454912	3300031572	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVVPAQSTMVTEMPEDLYQDWH
Ga0307474_102307833	3300031718	Hardwood Forest Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDGWGHTARRSAVLPAESTMVTEMPEGLSPDWHPASRRQC
Ga0306917_101142671	3300031719	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNVSTDAWGHTARRSAVLPAQSTMVTEMPEGLYQDWHPPAHWR
Ga0306917_114670532	3300031719	Soil	MKIVRFATAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVVPAQSTMITEMPEDLNQTGTRPHTVSC
Ga0318492_108133571	3300031748	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAGGHTARRSAVLPAQSTMVTEMPE
Ga0318529_100515501	3300031792	Soil	MKIVRFTAAPDGGSQFVEIDFPVDNASTDAGGHTARRSAVLPAQSTMVTEMPEDLYQDWHLASRRQLLIVLS
Ga0318568_108744721	3300031819	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMP
Ga0310917_101896243	3300031833	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEHLYQDWHPASRRQ
Ga0318527_102752402	3300031859	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEHLYQ
Ga0318520_105136901	3300031897	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEHLYQDWHPASRRQLL
Ga0306921_109799081	3300031912	Soil	MKIVRFASSSDGGSQFVELDMPIDNASTDAFDNTVRRSAILPAQSTMVTEMPEGFYQDWHPAS
Ga0308175_1018951892	3300031938	Soil	MKIVRFTSASDGGSQFVEVDIPIDNASTDAFGNTVHRSVILPAQSAMVTEMPEGLY
Ga0310913_104935501	3300031945	Soil	MKIVRFTAAPDGGSQFVEIDFPVDNASTDAGGHTARRSAVLPAQSTM
Ga0307479_100741584	3300031962	Hardwood Forest Soil	LIKIVRFAAAPDGGSQFVEIDFPVDNASTDGWGHTARRSAVLPAESTMVTEMPEGLSPDWHPASRRQC
Ga0318569_101439031	3300032010	Soil	MKIVRFATAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEDLYQD
Ga0318549_104188722	3300032041	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEDLYQDWHPA
Ga0318556_101474972	3300032043	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEHLYQDWH
Ga0306924_104226671	3300032076	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEG
Ga0318518_105307402	3300032090	Soil	MKIVRFAAAPDGGSQFVEIDFPVDNASTDAWGHTARRSAVLPAQSTMVTEMPEDLYQDW
Ga0307472_1026890982	3300032205	Hardwood Forest Soil	MKIVRFASASDGGAQLIEVDMPIDNASADTFGNTVRRSAILPAQSTMVTEMLEGFYQDCHPASRRQL
Ga0335081_103829581	3300032892	Soil	MKVVRFTTASDGGSQFVEVDIPIDNASTDAFNNTVHRSAVLPAQSTMVTDMPEGLY
Ga0335081_104802731	3300032892	Soil	MKVVRFAAAPDGGSQFVEADIPIDNASTDAFDNTVHRSAVLPAQSAMVTDMPEGLYQ
Ga0335077_120014392	3300033158	Soil	MKVVRFTTASDGGSQFVEVDIPIDNASTDAFNNTVHRSAVLPAQSTMVTDMPEG
Ga0334854_187942_2_157	3300033829	Soil	MKLIRFATASDGGSQFVEVDIPIDNASTDAFGNVVHRSGVLPAQSTMVTEMP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101624

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign