| Basic Information | |
|---|---|
| Family ID | F101568 |
| Family Type | Metagenome |
| Number of Sequences | 102 |
| Average Sequence Length | 47 residues |
| Representative Sequence | AYALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGLAELWGK |
| Number of Associated Samples | 88 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 82 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.49 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.784 % of family members) |
| Environment Ontology (ENVO) | Unclassified (28.431 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.235 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.06% β-sheet: 0.00% Coil/Unstructured: 56.94% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF12706 | Lactamase_B_2 | 31.37 |
| PF00753 | Lactamase_B | 25.49 |
| PF00326 | Peptidase_S9 | 2.94 |
| PF05345 | He_PIG | 2.94 |
| PF00557 | Peptidase_M24 | 1.96 |
| PF00069 | Pkinase | 1.96 |
| PF00364 | Biotin_lipoyl | 0.98 |
| PF02737 | 3HCDH_N | 0.98 |
| PF04055 | Radical_SAM | 0.98 |
| PF12728 | HTH_17 | 0.98 |
| PF01702 | TGT | 0.98 |
| PF14534 | DUF4440 | 0.98 |
| PF01425 | Amidase | 0.98 |
| PF01545 | Cation_efflux | 0.98 |
| PF05977 | MFS_3 | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG0515 | Serine/threonine protein kinase | Signal transduction mechanisms [T] | 7.84 |
| COG0053 | Divalent metal cation (Fe/Co/Zn/Cd) efflux pump | Inorganic ion transport and metabolism [P] | 0.98 |
| COG0154 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG0240 | Glycerol-3-phosphate dehydrogenase | Energy production and conversion [C] | 0.98 |
| COG0287 | Prephenate dehydrogenase | Amino acid transport and metabolism [E] | 0.98 |
| COG0343 | Queuine/archaeosine tRNA-ribosyltransferase | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG0677 | UDP-N-acetyl-D-mannosaminuronate dehydrogenase | Cell wall/membrane/envelope biogenesis [M] | 0.98 |
| COG1004 | UDP-glucose 6-dehydrogenase | Cell wall/membrane/envelope biogenesis [M] | 0.98 |
| COG1230 | Co/Zn/Cd efflux system component | Inorganic ion transport and metabolism [P] | 0.98 |
| COG1250 | 3-hydroxyacyl-CoA dehydrogenase | Lipid transport and metabolism [I] | 0.98 |
| COG1549 | Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG1748 | Saccharopine dehydrogenase, NADP-dependent | Amino acid transport and metabolism [E] | 0.98 |
| COG2084 | 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase | Lipid transport and metabolism [I] | 0.98 |
| COG2814 | Predicted arabinose efflux permease AraJ, MFS family | Carbohydrate transport and metabolism [G] | 0.98 |
| COG3965 | Predicted Co/Zn/Cd cation transporter, cation efflux family | Inorganic ion transport and metabolism [P] | 0.98 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
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| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 10.78% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 7.84% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 7.84% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 6.86% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 6.86% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 6.86% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 6.86% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 5.88% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.92% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.92% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 2.94% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.96% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.96% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 1.96% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.98% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.98% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.98% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.98% |
| Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland | 0.98% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.98% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.98% |
| Sandy Soil | Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil | 0.98% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.98% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 0.98% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.98% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001083 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
| 3300006041 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 | Environmental | Open in IMG/M |
| 3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006796 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009523 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG | Environmental | Open in IMG/M |
| 3300009524 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300011444 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2 | Environmental | Open in IMG/M |
| 3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017927 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018001 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5 | Environmental | Open in IMG/M |
| 3300018032 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021344 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2 | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300024295 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5 | Environmental | Open in IMG/M |
| 3300025505 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027701 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027910 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300029990 | I_Fen_N2 coassembly | Environmental | Open in IMG/M |
| 3300031150 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4 | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031521 | III_Fen_E2 coassembly | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032782 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| 3300033807 | Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12678J13193_10042642 | 3300001083 | Forest Soil | ERSQIYESILGFVTGIAGAYGGSVARRGLRELFGK* |
| JGIcombinedJ26739_1000795661 | 3300002245 | Forest Soil | AYAVLTEKPYRAQIYESFLGFLTGIAGSYGGATARRGLAELWGK* |
| C688J35102_1203091541 | 3300002568 | Soil | VPAMMLLSYFLFTEKPYRAQIYESFLGFLTGAAGAYGGAACRKAYREIFSKE* |
| Ga0070711_1000362975 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | LTVAVFVPLVQLAAYAMLTEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWE* |
| Ga0070698_1002090421 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | LLVAVFVPLVQGVAYLLLTEKPYRAQIYESFLGFLTGIAGAYGGSTARRGLVELFRER* |
| Ga0070695_1003449801 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | VFVPLVQLAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFGK* |
| Ga0068854_1007745402 | 3300005578 | Corn Rhizosphere | LTEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWE* |
| Ga0068861_1000493721 | 3300005719 | Switchgrass Rhizosphere | FVPLVQLAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFDQ* |
| Ga0068858_1025315561 | 3300005842 | Switchgrass Rhizosphere | EKPYRAQIYESFLGFLTGIAGAYGGATARAGLRELWK* |
| Ga0075023_1004581171 | 3300006041 | Watersheds | YRAQIYESFLGFLTGIAGAYSGATLCRGVERLFEK* |
| Ga0075023_1005741472 | 3300006041 | Watersheds | GACVPAVQLLAYFFLSAKPYRAQIYESFLGFLTGTAGGYAGSAGRKAFGEIFGTK* |
| Ga0075026_1000614864 | 3300006057 | Watersheds | AAYAVLTEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWQ* |
| Ga0075017_1000437415 | 3300006059 | Watersheds | AYAVLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGLGELWGK* |
| Ga0075017_1016846702 | 3300006059 | Watersheds | PYRAQIYESFLGFLTGIAGAYGGATARRALGQLWQ* |
| Ga0070765_1004347942 | 3300006176 | Soil | VIGVLVPAMQLLAYVFFTEKPYPAQIYESCLGFLTGIAGAYGGAVARRQMDELLRK* |
| Ga0066665_112304151 | 3300006796 | Soil | LTEKPYRAQIYESFLGFLTGVAGAYGGSVARTGLGELFRK* |
| Ga0075425_1004753433 | 3300006854 | Populus Rhizosphere | LVQLAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFGK* |
| Ga0099828_104515362 | 3300009089 | Vadose Zone Soil | AYLLLNVKPFRAQIYESFLGFLTGIAGAYGGSAGRRGLNELFGK* |
| Ga0105240_112354382 | 3300009093 | Corn Rhizosphere | LTAAVFVPLVRLAAYAMLAEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWE* |
| Ga0099792_111317861 | 3300009143 | Vadose Zone Soil | YRAQIYESFLGFLTGIAGAYGGATARKGLAELWGK* |
| Ga0105242_124455812 | 3300009176 | Miscanthus Rhizosphere | VAVFVPLVQLAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFGK* |
| Ga0105248_100581155 | 3300009177 | Switchgrass Rhizosphere | VAVFVPLVQLAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFDQ* |
| Ga0116221_13603161 | 3300009523 | Peatlands Soil | KPYRAQIYESFLGLLTGIAGAYGGSVARRGWNELFKKK* |
| Ga0116225_14433462 | 3300009524 | Peatlands Soil | VFVPVVQLFAYVFLTQKPYPAQIYESCLGFLTGIAGAYGGSFVRRGIDELMRK* |
| Ga0074044_110785722 | 3300010343 | Bog Forest Soil | IFVPFVQMLAYFFLAEKPYRAQIYESFLGFLTGIAGAYGGAVGRRVLNELKK* |
| Ga0126378_102887232 | 3300010361 | Tropical Forest Soil | VGIFVPLLQLLAYLFLTEKPYRAQIYESFLGFLTGTAGAYGGSAGRRAVGEILKR* |
| Ga0126381_1016553062 | 3300010376 | Tropical Forest Soil | QLLAYLFLTEKPYRAQIYESFLGFLTGTAGAYGGSAGRRAVGEILKR* |
| Ga0126381_1039060982 | 3300010376 | Tropical Forest Soil | LTEKPYRAQIYESFLGFLTGIAGAYGGSVVRRALRELSK* |
| Ga0126381_1040299812 | 3300010376 | Tropical Forest Soil | YLFLTEKPYRAQIYESFLGFLTGTAGAYGGSAGRRAVGEILKR* |
| Ga0136449_1020545421 | 3300010379 | Peatlands Soil | QKADRAHIYESFLGFLTGVAGAYGGAFGRRGLNELFGK* |
| Ga0134126_108311763 | 3300010396 | Terrestrial Soil | FVPLVQLAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFGK* |
| Ga0137463_10775691 | 3300011444 | Soil | PLVQLAAYAMLTRKPDRAQVYESFLGFLTGIAGAYGGATARRGVATLFEK* |
| Ga0137362_100165437 | 3300012205 | Vadose Zone Soil | WTLLVGVFVPVVQCAAYLLLTEKPYRAQIYESFLGFLTGIAGAYGGSAARRGMGELWR* |
| Ga0137380_112455331 | 3300012206 | Vadose Zone Soil | VVQLAAYLSLTQKPYQAQIYESFLGFLTGIAGAYGGALGRSAFEVLFEAK* |
| Ga0137413_114000261 | 3300012924 | Vadose Zone Soil | VFVPLVQLTAYAVLTEKPYRAQIYESFLGFLTGIAGAYGGATARRVVGQLWE* |
| Ga0137413_117483031 | 3300012924 | Vadose Zone Soil | KPYRAQIYESFLGFLTGIAGAYGGSVARKGLGELWKN* |
| Ga0137407_100109977 | 3300012930 | Vadose Zone Soil | FVPLVQLAAYAVLTEKPHRAQIYESFLGFLTGIAGAYGGATARRGLAELWGK* |
| Ga0182024_122310052 | 3300014501 | Permafrost | AFLFMTQKPDRAHIYESFLGFLTGIAGAYGGAVARNGMDELFGEK* |
| Ga0182036_105797482 | 3300016270 | Soil | FLGQKPYTAQIYESCLGFLTGIAGAYGGSVVRRGMEEVVRK |
| Ga0187802_100266102 | 3300017822 | Freshwater Sediment | FLTEKPYPAQLYESCLGFLTGIAGAYGGAVLRRLLNELASK |
| Ga0187824_103860061 | 3300017927 | Freshwater Sediment | PYRAQIYESFLGFLTGVAGAYGGATARRGLGELWRK |
| Ga0187819_100943753 | 3300017943 | Freshwater Sediment | LLAYLFLTEKPYRAQIYESSLGFLTGIAGSYGGSVARRGWNELFRK |
| Ga0187779_106343422 | 3300017959 | Tropical Peatland | FLTQKPYPAQLYESCLGFLTGIAGAYGGSVLRRIFNELSAK |
| Ga0187781_106439622 | 3300017972 | Tropical Peatland | TVGVFVPIVQLLAYLFLTEKPYPAQIYESLLGFLTGIAGAYAGSFLRRGMNELLRK |
| Ga0187781_110078582 | 3300017972 | Tropical Peatland | TVGVFVPIVQLLAYLFLTEKPYPAQIYESLLGFLTGIAGAYAGSFLRRGINELLRK |
| Ga0187782_100967611 | 3300017975 | Tropical Peatland | PWRWTITVGVFVPIVQLLAYLFLTEKPYPAQIYESLLGFLTGIAGAYAGSFLRRGMNELLRK |
| Ga0187782_111605302 | 3300017975 | Tropical Peatland | RWTITVGVFVPIVQLLAYLFLTEKPYPAQIYESLLGILTGIAGAYAGSFLRRGINELLRK |
| Ga0187815_103040411 | 3300018001 | Freshwater Sediment | AVFVPILQLLAYLFLTEKPYRAQIYESFLGFLTGIAGSYGGSVARRGWNELFRK |
| Ga0187788_101654012 | 3300018032 | Tropical Peatland | GHKPYAAQIYESCLGFLTGIAGAYGGSVVRRGMEELLRK |
| Ga0187772_106595742 | 3300018085 | Tropical Peatland | LTEEPYRAQVYESFLGFLTGIVGAYGGAVGRRVLNELRK |
| Ga0210408_110400922 | 3300021178 | Soil | AYALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGLAELWGK |
| Ga0193719_103890641 | 3300021344 | Soil | LVQGIAYLLLTEKPYRAQIYESFLGFLTGVAGAYGGSVARTGLGELFRK |
| Ga0210394_105720432 | 3300021420 | Soil | LAGYVLLTEKPYRAQIYESFLGFLTGIAGAYGGAVVRRGVGELSK |
| Ga0210402_113795082 | 3300021478 | Soil | VPVAQLLAYVFLTEKPYRAQIYESLLGFLTGIAGAYGGWVARKGWDELHRK |
| Ga0210410_101820072 | 3300021479 | Soil | FLLTEKPYRAQIYESFLGFLTGIAGSYGGATARRGLAELWEK |
| Ga0210409_102395943 | 3300021559 | Soil | VLTEKPYRAQVYESFLGFLTGIAGAYGGATARRGAATLFEK |
| Ga0126371_123563782 | 3300021560 | Tropical Forest Soil | VPVVELLAYAALSEKPYPAQIYESFLGFLTGAAGAYGGSLGRQAMNEIFRK |
| Ga0126371_125781953 | 3300021560 | Tropical Forest Soil | RWIVAVGIFVPLLQLLAYLFLTEKPYRAQIYESFLGFLTGTAGAYGGSAGRRAVGEILKR |
| Ga0126371_129784652 | 3300021560 | Tropical Forest Soil | YLFLTEKPYRAQIYESFLGFLTGTAGAYGGSAGRRAVGEILKR |
| Ga0224556_10815801 | 3300024295 | Soil | AYMFLTVKPYRAQIYESFLGFLTGIAGAYGGSVVRRAIDQLFKK |
| Ga0207929_10534582 | 3300025505 | Arctic Peat Soil | FVPLVRLGAYLLFGQKPYPAQIYESALGFVTGIAGAYGGAVGRRGFRELFGK |
| Ga0207692_106616891 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | QGVAYLLLTVKPYRAQIYESFLGFLTGIAGAYGGSVGRRGLRELWKK |
| Ga0207699_105608222 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | AYLLLTKRADRAQIYESFLGFLTGIAGAYGGSTARRGLKQLLGK |
| Ga0207699_111949492 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | KPYRAQIYESFLGFLTGIAGAYGGSVGRKGLRELWKK |
| Ga0207663_102277693 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | VAVFVPLVQLAAYAMLTEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWE |
| Ga0207640_122053391 | 3300025981 | Corn Rhizosphere | QLAAYAMLTEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWE |
| Ga0207703_121058421 | 3300026035 | Switchgrass Rhizosphere | LAAYAVLPEKPYRAQIYESFLGFLTGIAGAYGGATARAGLRELWK |
| Ga0207702_103429653 | 3300026078 | Corn Rhizosphere | VPLVQLAAYAMLTEKPYRAQIYESFLGFLTGIAGAYGGATARRALGQLWE |
| Ga0207676_120340632 | 3300026095 | Switchgrass Rhizosphere | LAAFALLTEKPYRAQIYESFLGFLTGIAGAYGGATARRGMATLFDQ |
| Ga0209447_100567552 | 3300027701 | Bog Forest Soil | IQLLAFLFLTVKPYRAQIYESFLGFLTGIAGAYGGSVLRRALNELRK |
| Ga0209060_105245051 | 3300027826 | Surface Soil | PIVQLLAYVFLTEKPYAAQLYESCLGFLTGIAGAYGGSVVRRGVNELRKK |
| Ga0209180_105560332 | 3300027846 | Vadose Zone Soil | LVQGVVYLLLTEKPYRAQIYESFLGFLTGIAGAYGGSIARRGLGELFRK |
| Ga0209579_103935701 | 3300027869 | Surface Soil | AVFVPIVQLLAYVFMTEKPYRAQLYESCLGFLTGIAGAYGGSVVRRGVDELMKK |
| Ga0209583_103412512 | 3300027910 | Watersheds | PVIQFAAYLLLTEKPYRAQIYESFLGFLTGTAGAYAGSAARRGLGELWK |
| Ga0209698_110619252 | 3300027911 | Watersheds | FLTEKPYRAQIYESFLGFLTGIAGAYGGSVARRGWSELFRK |
| Ga0311336_106351582 | 3300029990 | Fen | LFLTEKPYRAQIYESFLGFLTGVAGAYGGSVGRRALNAISQGK |
| (restricted) Ga0255311_11547221 | 3300031150 | Sandy Soil | LTEKPYRAQIYESFLGFLTGIAGAYGGATARRGTTNLFQK |
| Ga0302325_116791061 | 3300031234 | Palsa | LFMKAKPYRAQFYESLLGFLTGAAGAYGGSVLRSGARELFRPQSGQD |
| Ga0311364_125054051 | 3300031521 | Fen | LTEKPYRAQIYESFLGFLTGAAGAYGGAAVRKAVGEIFPAK |
| Ga0318541_106750631 | 3300031545 | Soil | YLLLGHKPYAAQIYESCLGFLTGIAGAYGGAVVRRGIEELLRK |
| Ga0318528_104556232 | 3300031561 | Soil | RAQIYESFLGFLTGTAGAYGGAAGRKALDEIFKAKS |
| Ga0307474_104648431 | 3300031718 | Hardwood Forest Soil | FKRQPERSQIYESILGFVTGIAGAYGGSVARRGLRELFGK |
| Ga0307474_108410201 | 3300031718 | Hardwood Forest Soil | FVPILQILAYMFLTVKPYRAQIYESFLGFLTGIAGAYGGAVVRRVADELWK |
| Ga0307474_112951913 | 3300031718 | Hardwood Forest Soil | FLTEKPYRAQIYESFLGFLTGIAGAYGGSAARKGWNELHRK |
| Ga0307469_114379491 | 3300031720 | Hardwood Forest Soil | LVQLVAYVALTEKPYRAQIYESFLGFLTGIAGAYGGATARRGLGELWRKR |
| Ga0310917_103881941 | 3300031833 | Soil | QLFAYLLLGHKPYAAQIYESCLGFLTGIAGAYGGAVVRRGIEELLRR |
| Ga0306921_116462111 | 3300031912 | Soil | FLTEKPYRAQIYESFLGFLTGTAGAYGGAAGRKALDEIFKAKS |
| Ga0310913_106623392 | 3300031945 | Soil | LVPLLQLLAYFFLTEKPYRAQIYESFLGFLTGTAGAYGGAAGRKALDEIFKAKS |
| Ga0310910_114087812 | 3300031946 | Soil | VPLVQLFAYLLLGHKPYAAQIYESCLGFLTGIAGAYGGAVVRRGIEELLRR |
| Ga0311301_122388862 | 3300032160 | Peatlands Soil | QKADRAHIYESFLGFLTGVAGAYGGAFGRRGLNELFGK |
| Ga0307471_1004341753 | 3300032180 | Hardwood Forest Soil | GVAYLLLTVKPYRAQIYESFLGFLTGIAGAYGGSVGRRGLRELWKK |
| Ga0307471_1014519731 | 3300032180 | Hardwood Forest Soil | GVAYLLLTEKPYRAQIYESFLGFLTGIAGAYGGSIARRGLRELWGK |
| Ga0335085_115924242 | 3300032770 | Soil | PYRAQIYESFLGFLTGIAGAYGGSIVRKAAGELFKTSS |
| Ga0335082_104798632 | 3300032782 | Soil | VQVLAYFFLTAKPYRAQIYESFLGFLTGIAGAYAGSMGRKVAGELLRSSS |
| Ga0335079_109522051 | 3300032783 | Soil | QGLAYVFLTQKPYPAQLYESCLGFLTGIAGAYGGSVLRRIFNELSAK |
| Ga0335080_100359106 | 3300032828 | Soil | IVVVGALVPLVELFAYLLLGHKPYPAQIYESCLGFLTAIAGAYGGSVVRRGMEELLRK |
| Ga0335070_103866701 | 3300032829 | Soil | VAIFVPIVQLLAYFLLTQKPYRAQIYESFLGFLTGIAGAYGGSVVRKAAEELFKS |
| Ga0335069_125448002 | 3300032893 | Soil | LFLTEKPYSAQIYESCLGFLTGIAGAYGGAVARRQLNELMKG |
| Ga0335077_103201011 | 3300033158 | Soil | FVPIMQALAYLFLTRKPYPAQLYESCMGFLTGIAGAYGGAVLRRLLNELKGK |
| Ga0335077_103695351 | 3300033158 | Soil | YAAQLYESCLGFLTGIAGAYGGSFFRRGVREILKKS |
| Ga0310914_102195483 | 3300033289 | Soil | VQLFAYLLLGHKPYAAQIYESCLGFLTGIAGAYGGAVVRRGIEELLRK |
| Ga0314866_003732_5_166 | 3300033807 | Peatland | VFVPILQGLAYVFLTQKPYPAQLYESCLGFLTGIAGAYGGSVLRRIFNELSAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |