Metagenome / Metatranscriptome Family F088849

Basic Information
Family ID	F088849
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	77 residues
Representative Sequence	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLVQSEAWRPGEAVLLCPDEAAVAKATPTIAERLKGVLGLLGRGAPA
Number of Associated Samples	83
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.73 %
% of genes near scaffold ends (potentially truncated)	26.61 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Most Common Taxonomy
Group	Bacteria (50.459 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (13.761 % of family members)
Environment Ontology (ENVO)	Unclassified (26.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.294 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.62% β-sheet: 0.00% Coil/Unstructured: 72.38%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00009	GTP_EFTU	11.01
PF00583	Acetyltransf_1	4.59
PF12697	Abhydrolase_6	3.67
PF14492	EFG_III	1.83
PF02801	Ketoacyl-synt_C	0.92
PF13458	Peripla_BP_6	0.92
PF08281	Sigma70_r4_2	0.92
PF02518	HATPase_c	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.46 %
Unclassified	root	N/A	49.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.46 %
Unclassified	root	N/A	49.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.46 %
Unclassified	root	N/A	49.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.54 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104989535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105874234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300004156\|Ga0062589_100945907	Not Available	798	Open in IMG/M
3300004156\|Ga0062589_102661086	Not Available	520	Open in IMG/M
3300004157\|Ga0062590_102938021	Not Available	510	Open in IMG/M
3300004480\|Ga0062592_101626838	Not Available	625	Open in IMG/M
3300005330\|Ga0070690_101610755	Not Available	526	Open in IMG/M
3300005332\|Ga0066388_100154300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2879	Open in IMG/M
3300005332\|Ga0066388_100338102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2151	Open in IMG/M
3300005332\|Ga0066388_101951721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1050	Open in IMG/M
3300005332\|Ga0066388_105856269	Not Available	621	Open in IMG/M
3300005332\|Ga0066388_106531903	Not Available	588	Open in IMG/M
3300005340\|Ga0070689_100256023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1446	Open in IMG/M
3300005459\|Ga0068867_101957534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300005561\|Ga0066699_11202174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300005578\|Ga0068854_101755643	Not Available	568	Open in IMG/M
3300005587\|Ga0066654_10386794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762	Open in IMG/M
3300005615\|Ga0070702_101368985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	577	Open in IMG/M
3300005713\|Ga0066905_100218368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1440	Open in IMG/M
3300005713\|Ga0066905_100361526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1163	Open in IMG/M
3300005764\|Ga0066903_100257995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2701	Open in IMG/M
3300005764\|Ga0066903_100387950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2288	Open in IMG/M
3300005764\|Ga0066903_100704819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1780	Open in IMG/M
3300005764\|Ga0066903_100867432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1627	Open in IMG/M
3300005764\|Ga0066903_101548167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1254	Open in IMG/M
3300005764\|Ga0066903_104232471	Not Available	768	Open in IMG/M
3300005764\|Ga0066903_106105284	Not Available	630	Open in IMG/M
3300005764\|Ga0066903_108049318	Not Available	540	Open in IMG/M
3300005841\|Ga0068863_101799787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300006046\|Ga0066652_100097063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2368	Open in IMG/M
3300006046\|Ga0066652_101333418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300006578\|Ga0074059_10210892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300006755\|Ga0079222_10750746	Not Available	784	Open in IMG/M
3300006794\|Ga0066658_10013866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3026	Open in IMG/M
3300006854\|Ga0075425_100472796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1443	Open in IMG/M
3300009012\|Ga0066710_103291630	Not Available	617	Open in IMG/M
3300009143\|Ga0099792_10308611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300009148\|Ga0105243_11903458	Not Available	628	Open in IMG/M
3300009553\|Ga0105249_10863983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300009792\|Ga0126374_10251076	Not Available	1155	Open in IMG/M
3300010046\|Ga0126384_10608396	Not Available	958	Open in IMG/M
3300010046\|Ga0126384_11068526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	738	Open in IMG/M
3300010047\|Ga0126382_11552591	Not Available	611	Open in IMG/M
3300010154\|Ga0127503_10222515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	508	Open in IMG/M
3300010154\|Ga0127503_10399690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300010154\|Ga0127503_10977755	Not Available	636	Open in IMG/M
3300010358\|Ga0126370_12373307	Not Available	526	Open in IMG/M
3300010359\|Ga0126376_10361707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1291	Open in IMG/M
3300010361\|Ga0126378_13130590	Not Available	526	Open in IMG/M
3300010364\|Ga0134066_10211231	Not Available	650	Open in IMG/M
3300010366\|Ga0126379_12494389	Not Available	616	Open in IMG/M
3300010373\|Ga0134128_12350971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300010376\|Ga0126381_103909520	Not Available	581	Open in IMG/M
3300010398\|Ga0126383_12671079	Not Available	582	Open in IMG/M
3300010398\|Ga0126383_13378414	Not Available	521	Open in IMG/M
3300012212\|Ga0150985_106388169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300012212\|Ga0150985_107366977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300012212\|Ga0150985_109883709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300012212\|Ga0150985_120572965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300012961\|Ga0164302_10591138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300012971\|Ga0126369_10314981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1572	Open in IMG/M
3300012989\|Ga0164305_11439014	Not Available	609	Open in IMG/M
3300013296\|Ga0157374_11052699	Not Available	833	Open in IMG/M
3300013297\|Ga0157378_11559973	Not Available	706	Open in IMG/M
3300013308\|Ga0157375_10076486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3374	Open in IMG/M
3300013308\|Ga0157375_13671553	Not Available	510	Open in IMG/M
3300014325\|Ga0163163_12850839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	539	Open in IMG/M
3300014326\|Ga0157380_10085549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2588	Open in IMG/M
3300015371\|Ga0132258_10294332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3990	Open in IMG/M
3300015372\|Ga0132256_101234180	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300016404\|Ga0182037_12162311	Not Available	501	Open in IMG/M
3300018429\|Ga0190272_10275276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1284	Open in IMG/M
3300018468\|Ga0066662_12160845	Not Available	584	Open in IMG/M
3300018476\|Ga0190274_11716373	Not Available	722	Open in IMG/M
3300018482\|Ga0066669_11465215	Not Available	619	Open in IMG/M
3300019263\|Ga0184647_1382847	Not Available	561	Open in IMG/M
3300025900\|Ga0207710_10547812	Not Available	602	Open in IMG/M
3300025906\|Ga0207699_10498579	Not Available	879	Open in IMG/M
3300025931\|Ga0207644_11686032	Not Available	531	Open in IMG/M
3300025936\|Ga0207670_11514518	Not Available	570	Open in IMG/M
3300025942\|Ga0207689_10918872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	738	Open in IMG/M
3300026088\|Ga0207641_11508245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300027787\|Ga0209074_10234612	Not Available	705	Open in IMG/M
3300027903\|Ga0209488_10247004	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300027910\|Ga0209583_10246805	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300028379\|Ga0268266_12096034	Not Available	538	Open in IMG/M
3300028828\|Ga0307312_11144412	Not Available	515	Open in IMG/M
3300031054\|Ga0102746_10811299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300031058\|Ga0308189_10408540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	563	Open in IMG/M
3300031421\|Ga0308194_10284248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300031543\|Ga0318516_10668991	Not Available	590	Open in IMG/M
3300031544\|Ga0318534_10063515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2082	Open in IMG/M
3300031572\|Ga0318515_10744759	Not Available	518	Open in IMG/M
3300031720\|Ga0307469_10211098	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300031724\|Ga0318500_10675936	Not Available	526	Open in IMG/M
3300031765\|Ga0318554_10308462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	900	Open in IMG/M
3300031771\|Ga0318546_10405422	Not Available	952	Open in IMG/M
3300031795\|Ga0318557_10536745	Not Available	537	Open in IMG/M
3300031805\|Ga0318497_10595882	Not Available	620	Open in IMG/M
3300031805\|Ga0318497_10729037	Not Available	556	Open in IMG/M
3300031879\|Ga0306919_11050886	Not Available	622	Open in IMG/M
3300032059\|Ga0318533_10443788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300032065\|Ga0318513_10259837	Not Available	842	Open in IMG/M
3300032076\|Ga0306924_10081632	All Organisms → cellular organisms → Bacteria → Proteobacteria	3626	Open in IMG/M
3300032261\|Ga0306920_101695450	Not Available	896	Open in IMG/M
3300032261\|Ga0306920_103876416	Not Available	545	Open in IMG/M
3300033433\|Ga0326726_11272250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300034090\|Ga0326723_0493203	Not Available	562	Open in IMG/M
3300034090\|Ga0326723_0522530	Not Available	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.90%
Host-Associated	Host-Associated	21.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.31%
Plants	Host-Associated → Plants	21.10%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Peat	Environmental → Terrestrial → Peat	2.75%
Sediment	Environmental → Aquatic → Sediment	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.21%
Loam	Environmental → Terrestrial → Soil → Loam	18.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.67%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031054	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1049895351	3300000364	Soil	MSIETLNTAVHAAGFAMATSEEPAGDPRPDKLMQSEAWRPGEAVLLSADEATVAKATPTIAERLKGVLGLRGRGAPA*
INPhiseqgaiiFebDRAFT_1058742341	3300000364	Soil	MSIENLNTAVRAAGFAMAASDEPSDDGKTDKHPESEAWRPGEAVXLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0062589_1009459071	3300004156	Soil	MSIENLNTAVRAAGFAMAVSDEGLDETKSDKQLQVEAWRPGEAIVLADDETAKTAPSIGDRLKGVLGLFGRSAPA*
Ga0062589_1026610862	3300004156	Soil	MSIENLNTAVRAAGFAMATSDEATDENKSDNQLQGEAWRPGEAILLSQDDAAVKAAPSIGDRLKGVLGLFGRSAPA*
Ga0062590_1029380211	3300004157	Soil	MSIENLNTAVRAAGFAMATSDEATDESKSDNLLQGEAWRPGEAILLSQDDAAVKAAPSIGDRLKGVLGLLGRSAPA
Ga0062592_1016268381	3300004480	Soil	MSIENLNTAVRAAGFAMAASDEPSDDGKTDKHPESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0070690_1016107552	3300005330	Switchgrass Rhizosphere	MSIETLNTAVRAAGFAMATSDEPSDESKADKQPQLESEAWRPGDAMLLTLDETELKPAPTFAGRIKG
Ga0066388_1001543002	3300005332	Tropical Forest Soil	MSIETLNTAVRAAGFAMATSDEPADDGKPVLPQGEAWRPGEAVLLTLDETVAGKASPTIAERLKGVLGLLGRGAPA*
Ga0066388_1003381022	3300005332	Tropical Forest Soil	MSIETLNTAVRAAGFAMAASDEPADDNNPDMLLPQSEAWRPGEAVLLSPDELAAVKATPTITERLKGVLGLLGRGAPA*
Ga0066388_1019517213	3300005332	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPADDTRPDKLPQSEAWRPGEAVLLHPDEVTAKAAPTIAERLKGVLGLLGRGAPA*
Ga0066388_1058562691	3300005332	Tropical Forest Soil	ETLNTAVHAAGFAMATSDEPADDPRPDKVLQSEAWRPGEAALLGPDDAAVAKASPPTIAERLKGVLGLLGRGAPA*
Ga0066388_1065319031	3300005332	Tropical Forest Soil	MSIESLNTAVRAAGFAMAPAEEAGDESKPDKPVPQSEAWRPGEAILLSPDEMAAAKAAPTITERLKGVLGLLGRGAPA*PDLGHIDGQG
Ga0070689_1002560231	3300005340	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDDGKTDKHPESEAWRPGEAVLLTQDEVALGAPGKPLTIAGRLKGVFGLFGRSAPA*
Ga0068867_1019575342	3300005459	Miscanthus Rhizosphere	AGFAMAASDEPSDEGKTDKHPESEAWRPGEAVLLTQDEVALGAPGKPLTIAGRLKGVFGLFGRSAPA*
Ga0066699_112021741	3300005561	Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLDSEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0068854_1017556431	3300005578	Corn Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0066654_103867941	3300005587	Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLESEAWRPGEAILLTQDEAALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0070702_1013689852	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSIETLNTAVRAAGFAMATSDEPSDESKADKQPQLESEAWRPGDAMLLTLDETELKPAPTFAGRIKGVLGLFGRSAPA*
Ga0066905_1002183682	3300005713	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPTDDPKPDKLIDSEAWRPGEAILLSPDEAAVAKTAPTIADRLKGVLGLLGRGAPA*
Ga0066905_1003615261	3300005713	Tropical Forest Soil	MSIETLNSAVHAAGFAMAPADEPADDPRPDKLWQSEAWRPGEAVLLCPDEAGKAAPTIAERLKGVLGLLGRGAPA*
Ga0066903_1002579952	3300005764	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPADDTRPDKLPQSEAWRPGEAVLLSGNEVTAKAAPTIAERLKGVLGLLGRGAPA*
Ga0066903_1003879502	3300005764	Tropical Forest Soil	MSIESLNTAVRAAGFAMAPSEEAGDENKPDKPVPQSEAWRPGEAILLSPDEMAAAKAAPTIAERLKGVLGLRGRGVPA*
Ga0066903_1007048191	3300005764	Tropical Forest Soil	MSIETLNTAVRAAGFAMAAADEPADENKPDMLLPQSEAWRPGEAVLLSPDELAAVKATPTITERLKGVLGLLGRGAPA*
Ga0066903_1008674322	3300005764	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPTDDPKPDKLIDSEAWRPGEAILLSPDEAAVAKATPTIAERLKGVLGLLGRGAPA*
Ga0066903_1015481671	3300005764	Tropical Forest Soil	MGIETLNTAVHAAGFAMATSDEPAEDPRPDKMLQSEAWRPGEAALLSPDEAAVAKASPPTIAERLKGVLGLLGRGAPA*
Ga0066903_1042324711	3300005764	Tropical Forest Soil	MSIETLNTAVRAAGFAMATSDEPADDGKPVLPQGEAWRPGEAVLLTLDETAAGKASPTIAERLKGVLGLLGRGAPA*
Ga0066903_1061052841	3300005764	Tropical Forest Soil	MGIETLNTAVHAAGFAMATSDEPAEDPIPDKMLQSEAWRPGEAALLSPDEAAVAIASPPTIAERLKGVLGLLGRGAPA*
Ga0066903_1080493181	3300005764	Tropical Forest Soil	MGIETLNTAVHAAGFAMATSDEPADDPRPDKVLQSEAWRPGEAALLGPDDAAVAKASPPTIAERLKGVLGLLGRGAPA*
Ga0068863_1017997872	3300005841	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKADKHPESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0066652_1000970632	3300006046	Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLESEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0066652_1013334182	3300006046	Soil	MSIENLNTAVRAAGFAMATSDEPADNTKPDKLLQSDAWRPGEAMLLSQDEPAAKAAPSIADRLKGVLGLLGRSAPA*
Ga0074059_102108921	3300006578	Soil	MSIENLNTAVRAAGFAMAPSDEPSEEGKVGNQQSEAWRQGGPIVLTQDEVALNADDKPSSFAGRLKGVLGLFARGAPA*
Ga0079222_107507461	3300006755	Agricultural Soil	MSIETLNTAVHAAGFAMATSDEPAGDPRPDKLMQSEAWRPGEAVLLSADEAAVAKATPTIAERLKGVLGLRGRGAPA*
Ga0066658_100138661	3300006794	Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAILLTQDEVALGAHGGKPLTIAGRLKGVFGLFGR
Ga0075425_1004727961	3300006854	Populus Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKTDRHPESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0066710_1032916301	3300009012	Grasslands Soil	MSIENVNTAVRAAGFAMATSDEVADEAKSGKQLDSEAWRPGEAILLTQDEVALSAPGRSASFAGRLKGVLGLFGRSAPA
Ga0099792_103086112	3300009143	Vadose Zone Soil	MSIENLNSAVRAAGFAMAMSDDPADACKPDKQLEIEAWRPGEAILLNQDESALSIQAKVAPTIADRLKGVLGLLGRSAPA*
Ga0105243_119034581	3300009148	Miscanthus Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLESEAWRPGEAVLLTQDEVAHGAHGKPLTIAGRLKGVFGL
Ga0105249_108639831	3300009553	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAVLLTQDEVALGAPGKPLTIAGRLKGVFGLFGRGAPA*
Ga0126374_102510761	3300009792	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPTDDPGPDKLIDSEAWRPGEAILLGPDEAAVAKATPTIAERLKGVLSLLGRGAPA*
Ga0126384_106083961	3300010046	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPTDDPRADKLIDSEAWRPGEAILLSPDEAAVAKATPTIAERLNSILGLLGRGAPA*
Ga0126384_110685261	3300010046	Tropical Forest Soil	SSCAMSIETLNTAVRAAGFAMATADEPADANKPDELPRQSEAWRPGEAVLLGPDEMAPDEMAVKATPTIAERLKGVLGLLGRGAPA*
Ga0126382_115525911	3300010047	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPADDTRPDKLPQGEAWRPGEAVLLSPDEVTAKAAPTIAERL
Ga0127503_102225152	3300010154	Soil	LNTAVRAAGFAMATSDEPADDIKPDQLLQSEAWRPGEAMLLSQDEPAAKSTTSIADRLKGVLGLLGRSAPA*
Ga0127503_103996902	3300010154	Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTGKHPESEAWSPGEAILLTQDEVALSAHGKPVTIAGRLKGVFGLFGRSAPA*
Ga0127503_109777551	3300010154	Soil	MSIETLNTAVRAAGFAMATSDELADDPRPDKLMQSEAWRPGEAVLLSPDEAAVAKATPTIAERLKGVLGLRGRGAPA*
Ga0126370_123733072	3300010358	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPTDDPRPDKLIDSEAWRPGEAILLSPDEAAVAKATPTIAERLKGGLGLLGRG
Ga0126376_103617072	3300010359	Tropical Forest Soil	MSIETLNTAVRAAGFAMAAADEPADEIKPDMLLPQSEAWRPGEAVLLSPDELAAVKATPTIAERLKGVLGLLGRGAPA*
Ga0126378_131305902	3300010361	Tropical Forest Soil	MSIETLNTAVRAAGFAMATADEPADANKPDELPRQSEAWRPGEAVLLGPDEMAPDRMAVKATPTITERLKGVLGLLGRGAPA*
Ga0134066_102112311	3300010364	Grasslands Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0126379_124943892	3300010366	Tropical Forest Soil	MATADEPADANKPDELPRQSEAWRPGEAVLLGPDEMAPDRMAVKATPTITERLKGVLGLLGRGAPA*
Ga0134128_123509711	3300010373	Terrestrial Soil	MSIENLNTAVRAAGFAMATSDEATDENKSDNQLQGEAWRPGEAILLSQDDAAVKAAPSIGDRLKGVLGLLGRSAPA*
Ga0126381_1039095201	3300010376	Tropical Forest Soil	AMGIETLNTAVHAAGFAMATSDEPADDPRPDKVLQSEAWRPGEAALLGPDDAAVAKASPPTIAERLKGVLGLLGRGAPA*
Ga0126383_126710791	3300010398	Tropical Forest Soil	MSIETLNTAVRAAGFAMATADEPADANKPDELPRQSEAWRPGEAVLLGPDEMAPDEVAVKATPTIAERLKGVLGLLGRGAPA*
Ga0126383_133784141	3300010398	Tropical Forest Soil	MSIETLNTAVHAAGFAMATSDEPTDDPKPDKLIDSEAWRPGEAILLSPDEAAVAKATPTIAERLKGVLSLLGRGAPA*
Ga0150985_1063881691	3300012212	Avena Fatua Rhizosphere	MSIENLNTAVRAAGFAMAPSDESSQEGKFGNQLQSEAWHPGEPIVLTQDEVALNADEKPSSFAGRLKGVLGLFARGAPA*
Ga0150985_1073669772	3300012212	Avena Fatua Rhizosphere	MSIENLNTAVRAAGFAMAPSDESDENKPAKQLQSEAWRPGEAIVLSHDDMGTVKAAPSIADRLKGVFGLLGRGAPA*
Ga0150985_1098837091	3300012212	Avena Fatua Rhizosphere	GTREPVLERLPGFKSSCTMSIENLNTAVRAAGFAMATSDEATDESKSDNLLQGEAWRPGEAILLSQDDAAVKAAPSIGDRLKGVLGLLGRSAPA*
Ga0150985_1205729651	3300012212	Avena Fatua Rhizosphere	MSIENLNTAVRAAGFAMATSDEATDESKSDNRLQGEAWRPGEAILLSQDDATVKAAPSIGDRLKGVLGLLGRSAPA*
Ga0164302_105911382	3300012961	Soil	MSIENLNTAVRAAGFAMAVSDEAADEAKSDKQLQVEAWRPGEAIVLADDDAAKAAPTIGDRLKGVLGLFGRSAPA*
Ga0126369_103149813	3300012971	Tropical Forest Soil	ASSCAMGIETLNTAVHAAGFAMATSDEPAEDPIPDKMLQSEAWRPGEAALLSPDEAAVAIASPPTIAERLKGVLGLLGRGAPA*
Ga0164305_114390141	3300012989	Soil	MSIENLNTAVRAAGFAMAVSDEAADETKSDKQLQVEAWRPGEAIVLADDDAAKAAPTIGDRLKGVLGLFGRSAPA*
Ga0157374_110526992	3300013296	Miscanthus Rhizosphere	MSIENLNTDVRAAGFAMAVSDEGLDETKSDKQLQVEAWRPGEAIVLADDETAKTAPSIGDRLKGVLGLFGRSAPA*
Ga0157378_115599731	3300013297	Miscanthus Rhizosphere	MSIENLNTAVRAAGFAMAPSDEPSEEGKVGNQQSEAWRQGEPIVLTQDEVALNADDKPSSFAGRLKGVLGLFARG
Ga0157375_100764862	3300013308	Miscanthus Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0157375_136715531	3300013308	Miscanthus Rhizosphere	MSIENLNTAVRAAGFAMATSDEATDESKSDNLLQGEAWRPGEAILLSQDDAAVKAAPSIGDRLKGVLGLLGRSAPA*
Ga0163163_128508391	3300014325	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAVSDEGLDETKSDKQLQVEAWRPGEAIVLADDDAAKAAPTIGDRLKGVLGLFGRSAPA*
Ga0157380_100855492	3300014326	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAPSDEPSEEGKVGNQQSEAWRQGEPIVLTQDEVALNADDKPSSFAGRLKGVLGLFARGAPA*
Ga0132258_102943325	3300015371	Arabidopsis Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDDGKTDKHPESEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA*
Ga0132256_1012341802	3300015372	Arabidopsis Rhizosphere	NTAVRAAGFAMAVSDEGLDETKSDKQLQVEAWRPGEAIVLADDETAKTAPSIGDRLKGVLGLFGRSAPA*
Ga0182037_121623111	3300016404	Soil	SGWASSCAMSIETLNTAVHAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0190272_102752761	3300018429	Soil	MSIENLNTAVRAAGFAMATSDEPAEQLTKPPESEAWRPGEAILLRQDETAAKAAPTIADRLKGVLGLLGRSAPA
Ga0066662_121608451	3300018468	Grasslands Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAILLTQDEVALGAHGGKPLTTAGRLKGVSGLFGR
Ga0190274_117163732	3300018476	Soil	MSIENLNTAVRAAGFAMATSDEATDENKSDNQLQGEAWRPGEAILLSQDDATVKAAPSIGDRLKGVLGLLGRSAPA
Ga0066669_114652151	3300018482	Grasslands Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLESEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGPSAPD
Ga0184647_13828472	3300019263	Groundwater Sediment	MSIENLNTAVRAAGFAMATSDEATDESKSDNQLQGEAWRPGEAILLSQDDTTVKAAPSIGDRLKGVLGLLGRSAPA
Ga0207710_105478121	3300025900	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAVSDEGLDETKSDKQLQVEAWRPGEAIVLADDDAAKAAPTIGDRLKGVLGLFGRSAPA
Ga0207699_104985791	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSIESLNTAVHAAGFAMATSDEPAGDPRPDKLMQSEAWRPGEAVLLSADEAAVAKATPTIAERLKGVLGLRGRGAPS
Ga0207644_116860321	3300025931	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGV
Ga0207670_115145182	3300025936	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDDGKTDKHPESEAWRPGEAVLLTQDEVALGAPGKPLTIAGRLKGVFGLFGRSAPA
Ga0207689_109188722	3300025942	Miscanthus Rhizosphere	VIQQTGFAMAASDEPSDEGKTDKHLESEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA
Ga0207641_115082452	3300026088	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAASDEPSDEGKADKHPESEAWRPGEAVLLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA
Ga0209074_102346121	3300027787	Agricultural Soil	MSIETLNTAVHAAGFAMATSDEPAGDPRPDKLMQSEAWRPGEAVLLSADEAAVAKATPTIAERLKGVLGLRGRGAPA
Ga0209488_102470042	3300027903	Vadose Zone Soil	MSIENLNSAVRAAGFAMAMSDDPADACKPDKQLEIEAWRPGEAILLNQDESALSIQAKVAPTIADRLKGVLGLLGRSAPA
Ga0209583_102468052	3300027910	Watersheds	MSIENLNTAVRAAGFAMATSDEPADDIKSDQLLQSEAWRPGEAMLLSQDEPAAKATTSIADRLKGVLGLLGRSAPA
Ga0268266_120960341	3300028379	Switchgrass Rhizosphere	MSIENLNTAVRAAGFAMAVSDEGLDETKSDKQLQVEAWRPGEAIVLADDETAKTAPSIGDRLKGVLGLFGRSAPA
Ga0307312_111444122	3300028828	Soil	MSIENLNTAVRAAGFAMAMSDEPSETGKRLESEAWRPGEAILLTQDEVALSAHGKPATFAGRLKGVLGLFGRSAPA
Ga0102746_108112991	3300031054	Soil	VRAAGFAMATTDEPAEQSAKPLESDETWRPGEAMLLSQDEVAAKAAPTITDRLKGVFGLLGRSAPA
Ga0308189_104085402	3300031058	Soil	MSIENLNTAVRAAGFAMATSDEATDESKSDSQLQGEAWRPGEAILLSQDDVTVKAAPSIGDRLKGVLGLLGRSAPA
Ga0308194_102842482	3300031421	Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHPESEAWRPGEAILLTQDEVALGAHGKPLTIAGRLKGVFGLFGRSAPA
Ga0318516_106689911	3300031543	Soil	MSIETLNTAVRAAGFAMAAADEPADEIKPDLLLPQSEAWRPGEAVLLSPDELEAVKATPTIAERLKGVLGLLGRGAPA
Ga0318534_100635152	3300031544	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0318515_107447591	3300031572	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGL
Ga0307469_102110982	3300031720	Hardwood Forest Soil	MSIENLNTAVRAAGFAMAASDEPSDEGKTDKHLESEAWRPGEAILLTQDEVALGAHGKPLKIAGRLKGVFGLFGRSAPA
Ga0318500_106759361	3300031724	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLVQSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0318554_103084621	3300031765	Soil	IETLNTAVRAAGFAMAAADEPADEIKPDLLLPQSEAWRPGEAVLLSPDELEAVKATPTIAERLKGVLGLLGRGAPA
Ga0318546_104054221	3300031771	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLG
Ga0318557_105367451	3300031795	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKQMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0318497_105958821	3300031805	Soil	MSIESLNTAVRAAGFAMAPSDEAGDENKPDKAVPQSEAWRPGEAILLSPDEMAAAKAAPTITERLKGVLGLLGRGAPA
Ga0318497_107290371	3300031805	Soil	MSIETLNTAVHAAGFAMATTDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0306919_110508861	3300031879	Soil	CAMSIETLNTAVHAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0318533_104437882	3300032059	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKQMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLG
Ga0318513_102598372	3300032065	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLK
Ga0306924_100816321	3300032076	Soil	HAAGFAMATSDEPADDPRPDKLMPSEAWRPGEAVLLCLDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0306920_1016954502	3300032261	Soil	MSIETLNTAVRAAGFAMATSEEPVDDGKPDKLPPQGEAWRPGEAVLLSLDETAAGKASPTITERLKGVLGLLGRGAPA
Ga0306920_1038764161	3300032261	Soil	MSIETLNTAVHAAGFAMATSDEPADDPRPDKLVQSEAWRPGEAVLLCPDEAAVAKATPTIAERLKGVLGLLGRGAPA
Ga0326726_112722501	3300033433	Peat Soil	LNTAVRAAGFAMATSDEPADENKPNKHPQSEGWRPGEAILLNEDETAASAQVKAAPTITERLKGVLGLLGRSAPA
Ga0326723_0493203_60_293	3300034090	Peat Soil	MSIENLNSAVRAAGFAMATSDECADENKPDKQLQSDAWRPGEAILLSPDESAEAKAAPSIADRLKGVLGLLGRGAPA
Ga0326723_0522530_71_313	3300034090	Peat Soil	MSIENLNTAVRAAGFAMATSDEPADENKPNKHPQSEGWRPGEAILLNEDETAASAQVKTAPTITERLKGVLGLLGRSAPA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088849

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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