Metagenome / Metatranscriptome Family F084201

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084201
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	47 residues
Representative Sequence	SEQARSEHAKGAALADLRSALAGKLSSGLDAQVLVPHPAGNAQKGAL
Number of Associated Samples	97
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.07 %
% of genes near scaffold ends (potentially truncated)	78.57 %
% of genes from short scaffolds (< 2000 bps)	94.64 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.893 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.607 % of family members)
Environment Ontology (ENVO)	Unclassified (43.750 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (41.964 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.33% β-sheet: 0.00% Coil/Unstructured: 62.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF06441	EHN	38.39
PF01070	FMN_dh	5.36
PF13191	AAA_16	3.57
PF06480	FtsH_ext	3.57
PF04978	DUF664	3.57
PF07992	Pyr_redox_2	2.68
PF00196	GerE	0.89
PF13561	adh_short_C2	0.89
PF12802	MarR_2	0.89
PF06831	H2TH	0.89
PF00271	Helicase_C	0.89
PF03640	Lipoprotein_15	0.89
PF13714	PEP_mutase	0.89
PF00378	ECH_1	0.89
PF00890	FAD_binding_2	0.89
PF03992	ABM	0.89
PF01850	PIN	0.89
PF03446	NAD_binding_2	0.89
PF13560	HTH_31	0.89
PF13424	TPR_12	0.89
PF11139	SfLAP	0.89
PF12697	Abhydrolase_6	0.89
PF04014	MazE_antitoxin	0.89
PF01545	Cation_efflux	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	38.39
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	5.36
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	5.36
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	3.57
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.89
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.89
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.89
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.89
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.89 %
Unclassified	root	N/A	49.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.89 %
Unclassified	root	N/A	49.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.89 %
Unclassified	root	N/A	49.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.29 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	4.46 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.57 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.79 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.89 %
unclassified Sphingomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales	0.89 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.89 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4.46 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.57 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.79 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.89 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.89 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.89 %
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	3.57 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.89 %
Phytohabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans	0.89 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.89 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.89 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.89 %
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.11 %
Pseudonocardia xinjiangensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	3.57 %
Phytohabitans rumicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	0.89 %
Geodermatophilus africanus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus africanus	0.89 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.89 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.89 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.89 %
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig87041	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1245	Open in IMG/M
2170459024\|GZRSKLJ01D02YQ	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	515	Open in IMG/M
3300000787\|JGI11643J11755_11532197	Not Available	1082	Open in IMG/M
3300000956\|JGI10216J12902_116349069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1375	Open in IMG/M
3300004153\|Ga0063455_101002027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300004463\|Ga0063356_101666798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	952	Open in IMG/M
3300004633\|Ga0066395_10716423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300004633\|Ga0066395_10913286	Not Available	532	Open in IMG/M
3300005164\|Ga0066815_10078064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300005332\|Ga0066388_106816950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300005341\|Ga0070691_10051005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1975	Open in IMG/M
3300005345\|Ga0070692_11067187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	568	Open in IMG/M
3300005435\|Ga0070714_100012297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus africanus	6828	Open in IMG/M
3300005467\|Ga0070706_101067800	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300005764\|Ga0066903_103764968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	815	Open in IMG/M
3300005764\|Ga0066903_104374166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	755	Open in IMG/M
3300005834\|Ga0068851_10147454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1284	Open in IMG/M
3300006028\|Ga0070717_10515929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1081	Open in IMG/M
3300006028\|Ga0070717_10525287	Not Available	1071	Open in IMG/M
3300006052\|Ga0075029_100762779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	656	Open in IMG/M
3300006162\|Ga0075030_100751806	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300006577\|Ga0074050_11052161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
3300009147\|Ga0114129_12518739	Not Available	615	Open in IMG/M
3300009176\|Ga0105242_11785028	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300009792\|Ga0126374_11184990	Not Available	611	Open in IMG/M
3300010043\|Ga0126380_10212118	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300010046\|Ga0126384_11825817	Not Available	578	Open in IMG/M
3300010048\|Ga0126373_10636261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1121	Open in IMG/M
3300010358\|Ga0126370_11676093	Not Available	611	Open in IMG/M
3300010361\|Ga0126378_12824775	Not Available	554	Open in IMG/M
3300010362\|Ga0126377_12028872	Not Available	651	Open in IMG/M
3300010366\|Ga0126379_11115010	Not Available	895	Open in IMG/M
3300010376\|Ga0126381_104760215	Not Available	522	Open in IMG/M
3300010399\|Ga0134127_10021251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5040	Open in IMG/M
3300010876\|Ga0126361_10768766	Not Available	959	Open in IMG/M
3300011270\|Ga0137391_11059746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	658	Open in IMG/M
3300012359\|Ga0137385_11532354	Not Available	530	Open in IMG/M
3300012897\|Ga0157285_10367711	Not Available	509	Open in IMG/M
3300012957\|Ga0164303_10275556	All Organisms → cellular organisms → Bacteria → Terrabacteria group	978	Open in IMG/M
3300013297\|Ga0157378_11676948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300014497\|Ga0182008_10658942	Not Available	594	Open in IMG/M
3300015371\|Ga0132258_10213570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4689	Open in IMG/M
3300016341\|Ga0182035_11491213	Not Available	608	Open in IMG/M
3300016357\|Ga0182032_10323664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1225	Open in IMG/M
3300016357\|Ga0182032_10462882	Not Available	1037	Open in IMG/M
3300016357\|Ga0182032_11014478	Not Available	709	Open in IMG/M
3300016387\|Ga0182040_11708139	Not Available	538	Open in IMG/M
3300016404\|Ga0182037_11086668	Not Available	700	Open in IMG/M
3300017947\|Ga0187785_10383270	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300017959\|Ga0187779_11211529	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300017961\|Ga0187778_10202338	Not Available	1266	Open in IMG/M
3300017966\|Ga0187776_11077632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	595	Open in IMG/M
3300017972\|Ga0187781_10544046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	835	Open in IMG/M
3300017974\|Ga0187777_11119888	Not Available	573	Open in IMG/M
3300018058\|Ga0187766_11054760	Not Available	581	Open in IMG/M
3300018465\|Ga0190269_10780028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	684	Open in IMG/M
3300021445\|Ga0182009_10059481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1644	Open in IMG/M
3300021560\|Ga0126371_12077847	Not Available	684	Open in IMG/M
3300025910\|Ga0207684_11111509	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300025916\|Ga0207663_10483915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	959	Open in IMG/M
3300025929\|Ga0207664_10326074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1355	Open in IMG/M
3300027725\|Ga0209178_1430916	Not Available	505	Open in IMG/M
3300031544\|Ga0318534_10193386	Not Available	1175	Open in IMG/M
3300031544\|Ga0318534_10495269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300031546\|Ga0318538_10267899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	918	Open in IMG/M
3300031546\|Ga0318538_10669936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia xinjiangensis	563	Open in IMG/M
3300031549\|Ga0318571_10149985	Not Available	805	Open in IMG/M
3300031640\|Ga0318555_10133346	Not Available	1325	Open in IMG/M
3300031681\|Ga0318572_10585561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	665	Open in IMG/M
3300031719\|Ga0306917_10510703	Not Available	944	Open in IMG/M
3300031723\|Ga0318493_10053636	Not Available	1915	Open in IMG/M
3300031724\|Ga0318500_10401160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300031747\|Ga0318502_10098141	Not Available	1621	Open in IMG/M
3300031748\|Ga0318492_10525935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300031751\|Ga0318494_10402511	Not Available	794	Open in IMG/M
3300031751\|Ga0318494_10898330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300031765\|Ga0318554_10096363	Not Available	1660	Open in IMG/M
3300031765\|Ga0318554_10156299	Not Available	1295	Open in IMG/M
3300031765\|Ga0318554_10720556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	559	Open in IMG/M
3300031771\|Ga0318546_10211167	Not Available	1328	Open in IMG/M
3300031771\|Ga0318546_11151222	Not Available	545	Open in IMG/M
3300031781\|Ga0318547_10843411	Not Available	571	Open in IMG/M
3300031794\|Ga0318503_10259919	Not Available	563	Open in IMG/M
3300031797\|Ga0318550_10216147	Not Available	929	Open in IMG/M
3300031798\|Ga0318523_10322474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300031805\|Ga0318497_10069707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1847	Open in IMG/M
3300031805\|Ga0318497_10176081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1178	Open in IMG/M
3300031835\|Ga0318517_10296959	Not Available	730	Open in IMG/M
3300031845\|Ga0318511_10578476	Not Available	523	Open in IMG/M
3300031897\|Ga0318520_10411729	Not Available	827	Open in IMG/M
3300031954\|Ga0306926_10108564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	3410	Open in IMG/M
3300031959\|Ga0318530_10343255	Not Available	618	Open in IMG/M
3300032009\|Ga0318563_10042381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2315	Open in IMG/M
3300032009\|Ga0318563_10576053	Not Available	607	Open in IMG/M
3300032010\|Ga0318569_10629418	Not Available	500	Open in IMG/M
3300032025\|Ga0318507_10384910	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300032035\|Ga0310911_10208923	Not Available	1112	Open in IMG/M
3300032035\|Ga0310911_10910624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	507	Open in IMG/M
3300032039\|Ga0318559_10410877	Not Available	631	Open in IMG/M
3300032060\|Ga0318505_10272940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	797	Open in IMG/M
3300032065\|Ga0318513_10281962	Not Available	806	Open in IMG/M
3300032066\|Ga0318514_10226718	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300032068\|Ga0318553_10128176	Not Available	1307	Open in IMG/M
3300032090\|Ga0318518_10427199	Not Available	679	Open in IMG/M
3300032160\|Ga0311301_10649490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1502	Open in IMG/M
3300032205\|Ga0307472_102022125	Not Available	578	Open in IMG/M
3300032783\|Ga0335079_10451646	Not Available	1378	Open in IMG/M
3300032828\|Ga0335080_10296463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1757	Open in IMG/M
3300032954\|Ga0335083_10038340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5229	Open in IMG/M
3300032954\|Ga0335083_11215548	Not Available	583	Open in IMG/M
3300032955\|Ga0335076_11583831	Not Available	543	Open in IMG/M
3300033290\|Ga0318519_10216448	Not Available	1098	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.75%
Host-Associated	Host-Associated	6.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.96%
Plants	Host-Associated → Plants	6.25%
Aquatic	Environmental → Aquatic	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Sediment	Environmental → Aquatic → Sediment	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.86%
Loam	Environmental → Terrestrial → Soil → Loam	13.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.14%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_05698740	2124908045	Soil	EKYESEQARSEHVKGAALADLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL
FD1_04407530	2170459024	Grass Soil	MIEKYTSAQARAEHRKGAALADLRSAWTASSAPTFDAQVLVPHPAGDPQKGAM
JGI11643J11755_115321972	3300000787	Soil	MIEXXXSEQARSEHSKGAAFADLLSVLDGKLSSRLDVQIVLPHPAGNAQKGAL*
JGI10216J12902_1163490693	3300000956	Soil	MIEKYESEQARAEHAKGAALADLRSAVEGKLSSGLDAQVLLPHPAGNPHKGAL*
Ga0063455_1010020271	3300004153	Soil	ESEQALSEHSQSGALADLLSAFEGKLARDIDVQVLVPHPAGEAQKGVLPGR*
Ga0063356_1016667981	3300004463	Arabidopsis Thaliana Rhizosphere	MIEKYDSEQARSEHSKGAAFAHLLSVLDGKLSSRLDVQIVLPHPAGNAQKGAL*
Ga0066395_107164232	3300004633	Tropical Forest Soil	IKGAGLAGLRAALEGKLSSPIDVQVLVPHPAGSTDKGAL*
Ga0066395_109132862	3300004633	Tropical Forest Soil	SEHIHGAALADLRSALEGKLSSGLDAQVLVPHPAGNVQKGAL*
Ga0066815_100780641	3300005164	Soil	YESAEARSKHSQGAALADLRSALAGKLSTGLDVQVLEPHPAGNAQKGAL*
Ga0066388_1068169501	3300005332	Tropical Forest Soil	SEQARSEHRKGPALAGLVSALEGNLSSPLDVQVLVPHPAGNAGKGTL*
Ga0070691_100510051	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	YESAEARSEHSRGVALADLRSALDGKLPTGLDVQVLQLHPAGNAQKGAL*
Ga0070692_110671872	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	ESAEARSEHSRGAALADLRSALEGKLTTGLDVQVLEPHPAGNAQKGAL*
Ga0070714_1000122977	3300005435	Agricultural Soil	MIEKYEPEQARSEHLKGAALADLRSALHDKLSSSLDAQVLVPYPVGNDD*
Ga0070706_1010678002	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIEKYESERARSEHLTGAGLADLRSALEGKLCRGLDVQVLVPHPAGSAQKGAL*
Ga0066903_1037649681	3300005764	Tropical Forest Soil	QDAVDQHIKGAGLAGLRAALEGKLSSPIDVQVLVPHPAGIKDKGAL*
Ga0066903_1043741661	3300005764	Tropical Forest Soil	MIEKYESEHAKGAALADLRSPLQGKLSSGLDAQVLVPHPAGNAQKGAL*
Ga0068851_101474542	3300005834	Corn Rhizosphere	YESAEARSEHSRGAALADLRSALEGKLTTGLDVQVLEPHPAGNAQKGAL*
Ga0070717_105159292	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LADLRASLAGKLSSDLDVQVLMPHPAGTPQQGTL*
Ga0070717_105252871	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSGWGPADLRSALQGKLSSALDAQVLVPRPAGNAHKGEL*
Ga0075029_1007627792	3300006052	Watersheds	MIEKYESEQARSEHLTGAALADLRSVLEGKLSSGLDVQVLVPHPAGNARKGAL*
Ga0075030_1007518061	3300006162	Watersheds	VMIEKYESEQARSEHRQGAALGGLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL*
Ga0074050_110521612	3300006577	Soil	MIEKYESAEARSKHSQGAALADLRSALAGKLSTGLDLQVLEPHPAGNAQKGAL*
Ga0114129_125187392	3300009147	Populus Rhizosphere	VVAAPADLRSALEGKLSSGLDAQVLVPHPAGDAHKGAL*
Ga0105242_117850282	3300009176	Miscanthus Rhizosphere	LADLRSALEGKLTTGLDVQVLEPHPAGNAQKGAL*
Ga0126374_111849901	3300009792	Tropical Forest Soil	QGQALADLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL*
Ga0126380_102121181	3300010043	Tropical Forest Soil	QGAALADLRSALDGKLSTDLDAQILVPHPAGNPQKGAL*
Ga0126384_118258172	3300010046	Tropical Forest Soil	IEKYESEQARSEHVKGTALADLRSALQGKLSSGLDAQVLVPHPAGNAQKGAV*
Ga0126373_106362612	3300010048	Tropical Forest Soil	MIEKYASQDAVDQHIKGAGLAGLRAALEGKLSSPMEVQVLAPHPAGSEDKGAL*
Ga0126370_116760932	3300010358	Tropical Forest Soil	GAALADLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL*
Ga0126378_128247751	3300010361	Tropical Forest Soil	KGAALADLRSALDGKLASGLDAQVLVPHPAGNPQKGAL*
Ga0126377_120288722	3300010362	Tropical Forest Soil	MIEKYESDQARSEHLQGAALASLRTALEGKLSSGLDAQVLAPHPAGNAQKGAL*
Ga0126379_111150102	3300010366	Tropical Forest Soil	MIEKYESEHARSEHAKGAALADLRSPLQGKLSSGLDAQVLVPHPAGNAQKGAL*
Ga0126381_1047602151	3300010376	Tropical Forest Soil	MIEKYESEQARSEHRKGAALAGLLADLQGKLSSNLDAQVLVPHPAGNSQKGTL*
Ga0134127_100212517	3300010399	Terrestrial Soil	SRGAALADLRSALEGKLTTGLDVQVLEPHPAGNAQKGAL*
Ga0126361_107687662	3300010876	Boreal Forest Soil	VVAALTAFSALVGLRSALEGKLSSGLDTQVRVPHPAGYAQKGAL*
Ga0137391_110597461	3300011270	Vadose Zone Soil	MIEKYESEQARSEHLKGAALAGLRVALYGRLSSGLDAQVLAPHPAGNPEKGTL*
Ga0137385_115323542	3300012359	Vadose Zone Soil	MIEKYESEQARSEHAKGAALAGLRSALEGKLSSGLDAQVLAPHPAGNAQKGAL*
Ga0157285_103677111	3300012897	Soil	SAALADLLSALEGKLSRGLDVQALLPHPTGNAQKGAL*
Ga0164303_102755561	3300012957	Soil	SRGAALADLRSALEGKLTTGLDLQVLEPHPAGNAQKGAL*
Ga0157378_116769481	3300013297	Miscanthus Rhizosphere	KYESAEARSEHSRGAPLADLRSALEGKLTTGLDVQVLEPHPAGNAQKGAL*
Ga0182008_106589421	3300014497	Rhizosphere	QARSEHSKGAAFAHLLSVVDGKLSSRLDVQIVLPHPAGNAQKGAL*
Ga0132258_102135703	3300015371	Arabidopsis Rhizosphere	LEHSKGAALGHLLSALDGKLSRDLDAQFLEPHPAGNPEKGAL*
Ga0182035_114912132	3300016341	Soil	EKYESEQARSEHAMGAALADLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0182032_103236642	3300016357	Soil	VMIEKYASEQARAEHRKGAALADLVSALEGKLSAALDAQVLVPHPAGNARKGAL
Ga0182032_104628822	3300016357	Soil	ARSEHIKGAALADLRSALEGKLSSGLDAQVLTPHPAGNPRKGAL
Ga0182032_110144782	3300016357	Soil	LEHAKGGALAGLRSALAGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0182040_117081391	3300016387	Soil	GRDRLIMIEKYESEQARSEHAKGAALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0182037_110866681	3300016404	Soil	ARSEHTKGAALAGLRAALEGRLSSGLDAQVLTPHAAGNAQKGAL
Ga0187785_103832702	3300017947	Tropical Peatland	EKYESEQARSEHLQGQALADLRSALEGKLSSGLDAQVLVPHPAGNARKGVL
Ga0187779_112115291	3300017959	Tropical Peatland	QARSDQLKGAALADLRSALEGKSSSGPDGQVLVPHPAGNAQKGAL
Ga0187778_102023381	3300017961	Tropical Peatland	AEARSEHLKGKALADLRSALEGKLSSALDVQVLTPHSAGDPQKGAL
Ga0187776_110776321	3300017966	Tropical Peatland	MIEKYESEQARSEHLQGASLADLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0187781_105440461	3300017972	Tropical Peatland	MIEKYQSVQARSEHPNGTALADLRSALQGKLSSGLDVQVLVPHPAGNAGKGAL
Ga0187777_111198881	3300017974	Tropical Peatland	MIEKYQSEQARSEHLKGAALADLRLALQGTLSSGLDAQVLVPHPAGNAQKGAL
Ga0187766_110547602	3300018058	Tropical Peatland	GAALADLRSALQGKLSSDLEVQVLVPHPAGKAQKGAL
Ga0190269_107800281	3300018465	Soil	TLADLLSALEGKLSGDLDVQVLVPHPAGNAQKGAL
Ga0182009_100594812	3300021445	Soil	MIEKYDSEQARSEHSKGAAFAHLLSVVDGKLSSRLDVQIVLPHPAGNAQKGAL
Ga0126371_120778471	3300021560	Tropical Forest Soil	MIAWLCAMTATAAQARSEHLKKVALADLRTSLEGNLSHALDPQVLVTHPAGNAQKGAL
Ga0207684_111115091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EKYESERARSEHLTGAGLADLRSALEGKLCRGLDVQVLVPHPAGSAQKGAL
Ga0207663_104839152	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	KYESQQARSEHLKGAALAALRSALESRLSSGLDVQALVPHPAGNAQKGVL
Ga0207664_103260743	3300025929	Agricultural Soil	MIEKYEPEQARSEHLKGAALADLRSALHDKLSSSLDAQVLVPYPVGNDD
Ga0209178_14309161	3300027725	Agricultural Soil	LRTKHLNGEALARLRSALQGKLRSGLDALVLVPHPAGDSRKGALAAAPS
Ga0318534_101933861	3300031544	Soil	YESDEARSKHLQGAALAALRSSLDGKLSRALDAQVLVPHPAGDMQKGAL
Ga0318534_104952692	3300031544	Soil	EQARSEHTKGAALADLRTALAGKLSSSLDAQVLVPHPAGNAQKGAL
Ga0318538_102678993	3300031546	Soil	VMIEKYESEQARSEHTKGAALADLRTALAGKLSSSLDAQVLVPHPAGNAQKGAL
Ga0318538_106699361	3300031546	Soil	MIEKYTSQQARSEHAKGAALAGLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0318571_101499851	3300031549	Soil	ATLASLRSALEGKLSSGLDVQVLVPHPAGNAQKGTL
Ga0318555_101333462	3300031640	Soil	IEKYESEQARSEHARGAALADLRSALQGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0318572_105855612	3300031681	Soil	RRGAALADLRSALEGKLSSDLDAQVLVPHPAGDAQKGAL
Ga0306917_105107032	3300031719	Soil	YESEQARSEHAKGAALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0318493_100536361	3300031723	Soil	ARSEHAKGAALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0318500_104011602	3300031724	Soil	VMIEKYASQDAVDQHIKGAGLAGLRAALEGKLSSPIDVQVLVPHPAGSKDKGAL
Ga0318502_100981413	3300031747	Soil	AKGAALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0318492_105259352	3300031748	Soil	ESEQARSEHIKGAALADLRSALEGKLTSGLDAQVLTPHPAGNPQKGAL
Ga0318494_104025112	3300031751	Soil	LVTIEKYESEQARSEHARGAALADLRSALQGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0318494_108983301	3300031751	Soil	HIRGAGLAGLRAALEGKLSSPIDVQVLVPHPAGSKDKGAL
Ga0318554_100963633	3300031765	Soil	IEKYESEQARSEHAKGAALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0318554_101562992	3300031765	Soil	IEKYESEQARSEHIKGAALADLRSALEGKLSSGLDAQVLTPHPAGNPRKGAL
Ga0318554_107205562	3300031765	Soil	KYASEQARSEHRQGAALAGLVSALEGKLSGPLDAQVLVPHPAGNARKGAL
Ga0318546_102111672	3300031771	Soil	EQARSEHAKGAALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0318546_111512222	3300031771	Soil	SEQARSEHAKGAALADLRSALAGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0318547_108434113	3300031781	Soil	VMIEKYESDEARSKHLQGAALAALRSSLDGKLSRALDAQVLVPHPAGNTQKGAL
Ga0318503_102599191	3300031794	Soil	EKYESDEARSKHLQGAALAALRSSLDGKLTRALDAQVLVPHPAGDMQKGAL
Ga0318550_102161472	3300031797	Soil	SDEARSKHLQGAALAALRSSLDGKLTRALDAQVLVPHPAGDMQKGAL
Ga0318523_103224741	3300031798	Soil	AKGAALADLRTALAGKLSSSLDAQVLVPHPAGNAQKGAL
Ga0318497_100697071	3300031805	Soil	RRVMIETYESEQARSEHIKGAALADLRSALEGKLSSGLDAQVLTPHPAGNPRKGAL
Ga0318497_101760812	3300031805	Soil	KYESEQARSEHLQGQALADLRSALEGKLSTGLDAQVLVPHPAGNARKGAL
Ga0318517_102969592	3300031835	Soil	SEQARSEHRRGAALADLRSALEGKLSSDLDAQVLVPHPAGDAQKGAL
Ga0318511_105784762	3300031845	Soil	EHLKGAALADLRYALDGKLSSNLDAQVLVPHPAGNAQKGAL
Ga0318520_104117291	3300031897	Soil	ALADLRSALRGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0306926_101085641	3300031954	Soil	EQARSEHTKGAALADLRTALAGKLSSSLDAQVLVPHPAGNAQQGAL
Ga0318530_103432551	3300031959	Soil	GPDRLVTIEKYESEQARSEHARGAALADLRSALQGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0318563_100423811	3300032009	Soil	YASEQARSEHRQGAALAGLVSALDGKLSSPLDAQVLVPHLAGNARKGALCRSAGKP
Ga0318563_105760531	3300032009	Soil	ASEQARAEHRKGAALADLVSALEGKLSAALDAQVLVPHPAGNARKGAL
Ga0318569_106294182	3300032010	Soil	EHTKGAALADLRSALEGKLSSDLDAQVLVPHPAGNAQKGAL
Ga0318507_103849101	3300032025	Soil	ALADLRSALEGKLSSDLDAQVLVPHPAGDAQKGAL
Ga0310911_102089232	3300032035	Soil	AALADLRSALEGKLSSGLDAQVLTPHPAGNPRKGAL
Ga0310911_109106241	3300032035	Soil	HRQGAALAGLVSALDGRLSSPLDAQVLVPHPAGNARKGAL
Ga0318559_104108771	3300032039	Soil	SEQARSEHAKGAALADLRSALQGKLSSGLDVQVLVPHPAGDARKGAL
Ga0318505_102729403	3300032060	Soil	HTKGAALADLRTALAGKLSSSLDAQVLVPHPAGNAQKGAL
Ga0318513_102819623	3300032065	Soil	LQGAALAALRSSLDGKLSRALDVQVLVPHPAGDMQKGTL
Ga0318514_102267181	3300032066	Soil	DQARSEHIKGAALADLRSALEGKLTSGLDAQVLTPHPAGNPQKGAL
Ga0318553_101281762	3300032068	Soil	GAALADLRSALQGKLSSGLDVQVLVPHPAGDARKGAL
Ga0318518_104271991	3300032090	Soil	GAALADLRSALEGKLSSDLDAQVLVPHPAGDAQKGAL
Ga0311301_106494904	3300032160	Peatlands Soil	MTEKYESEQARPEHAKSAALAGLRSALAGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0307472_1020221252	3300032205	Hardwood Forest Soil	MIEKYQSEQARSEHLTGAALADLRSALEGKLSSGLDAQVLVPHPAGNPQKGAL
Ga0335079_104516461	3300032783	Soil	EQARSEHSKGAALAGLRSALEGKLSSGLDAQVLVPHPAGNAQKGAL
Ga0335080_102964631	3300032828	Soil	KYESEQARSEHLQGQALADLRSALEGKLSSGLDAQVLVPYPAGNAQKGAL
Ga0335083_100383405	3300032954	Soil	ALAGLQADLQGKLSSNLDAQVLVPHPAGNSQKGTL
Ga0335083_112155481	3300032954	Soil	HAKGAAPTDLRSALAGKLSSGLDAQVLVPHPAGNAQKGVL
Ga0335076_115838312	3300032955	Soil	VMIEKYESAQARSEHAKGAAPTDLRSALAGKLSSGLDAQVLVPHPAGNAQKGVL
Ga0318519_102164481	3300033290	Soil	VMIEKYESNEARSKHLQGAALAALRSSLDGKLSRALDVQVLVPHPAGDMQKGTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084201

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences