| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300034815 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0142001 | Gp0401920 | Ga0373906 |
| Sample Name | Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 441009238 |
| Sequencing Scaffolds | 30 |
| Novel Protein Genes | 31 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058 | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States |
| Type | Engineered |
| Taxonomy | Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oak Ridge, Tennessee | |||||||
| Coordinates | Lat. (o) | 36.0103 | Long. (o) | -84.2696 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000769 | Metagenome / Metatranscriptome | 898 | Y |
| F001269 | Metagenome / Metatranscriptome | 734 | Y |
| F005859 | Metagenome / Metatranscriptome | 388 | Y |
| F006756 | Metagenome / Metatranscriptome | 365 | Y |
| F012061 | Metagenome / Metatranscriptome | 284 | Y |
| F013650 | Metagenome / Metatranscriptome | 269 | Y |
| F016990 | Metagenome | 243 | Y |
| F018024 | Metagenome / Metatranscriptome | 237 | Y |
| F018530 | Metagenome / Metatranscriptome | 234 | Y |
| F024925 | Metagenome / Metatranscriptome | 204 | Y |
| F027886 | Metagenome / Metatranscriptome | 193 | Y |
| F028847 | Metagenome | 190 | N |
| F040161 | Metagenome | 162 | Y |
| F040696 | Metagenome | 161 | Y |
| F046457 | Metagenome | 151 | Y |
| F050736 | Metagenome / Metatranscriptome | 145 | Y |
| F056027 | Metagenome / Metatranscriptome | 138 | Y |
| F056130 | Metagenome / Metatranscriptome | 138 | Y |
| F061953 | Metagenome / Metatranscriptome | 131 | Y |
| F066874 | Metagenome / Metatranscriptome | 126 | Y |
| F076225 | Metagenome / Metatranscriptome | 118 | Y |
| F081467 | Metagenome / Metatranscriptome | 114 | Y |
| F081509 | Metagenome | 114 | N |
| F094825 | Metagenome / Metatranscriptome | 105 | Y |
| F094833 | Metagenome | 105 | N |
| F097611 | Metagenome | 104 | Y |
| F097617 | Metagenome | 104 | Y |
| F099378 | Metagenome | 103 | Y |
| F103502 | Metagenome | 101 | Y |
| F103508 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0373906_049785 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9 | 944 | Open in IMG/M |
| Ga0373906_068540 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 810 | Open in IMG/M |
| Ga0373906_072651 | Not Available | 788 | Open in IMG/M |
| Ga0373906_078315 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 760 | Open in IMG/M |
| Ga0373906_078629 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 758 | Open in IMG/M |
| Ga0373906_087456 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 721 | Open in IMG/M |
| Ga0373906_088410 | All Organisms → cellular organisms → Bacteria | 717 | Open in IMG/M |
| Ga0373906_091636 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058 | 705 | Open in IMG/M |
| Ga0373906_093864 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 697 | Open in IMG/M |
| Ga0373906_102890 | Not Available | 667 | Open in IMG/M |
| Ga0373906_119523 | Not Available | 622 | Open in IMG/M |
| Ga0373906_124364 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 610 | Open in IMG/M |
| Ga0373906_125580 | Not Available | 607 | Open in IMG/M |
| Ga0373906_133885 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 589 | Open in IMG/M |
| Ga0373906_134457 | All Organisms → cellular organisms → Bacteria | 588 | Open in IMG/M |
| Ga0373906_137964 | Not Available | 581 | Open in IMG/M |
| Ga0373906_141817 | Not Available | 573 | Open in IMG/M |
| Ga0373906_147258 | Not Available | 563 | Open in IMG/M |
| Ga0373906_149027 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 560 | Open in IMG/M |
| Ga0373906_152581 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 554 | Open in IMG/M |
| Ga0373906_152654 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 554 | Open in IMG/M |
| Ga0373906_154952 | Not Available | 550 | Open in IMG/M |
| Ga0373906_160800 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 540 | Open in IMG/M |
| Ga0373906_168520 | Not Available | 529 | Open in IMG/M |
| Ga0373906_173140 | All Organisms → cellular organisms → Bacteria | 522 | Open in IMG/M |
| Ga0373906_183038 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 509 | Open in IMG/M |
| Ga0373906_183348 | Not Available | 509 | Open in IMG/M |
| Ga0373906_187028 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 504 | Open in IMG/M |
| Ga0373906_187213 | Not Available | 504 | Open in IMG/M |
| Ga0373906_190028 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0373906_049785 | Ga0373906_049785_432_878 | F027886 | MRKHRRLSIKLGIMLVTVGLVAIQTEAYGQSWKWEFFLSDAECDFFYDPDTVFKSPENMVRVWWKEDFKTKEVLRSRGFTGGEYEKAAYQINVSEINCKKKESCLKFFMICSAEGENILCNIHKRKTDEWVSVRQSHPIGVLYWKVCQ |
| Ga0373906_068540 | Ga0373906_068540_273_809 | F006756 | QEIVSYARSWRRGQTFGADRFEKELAEHRPAAQRSQAQQRLFDYLRSLCAPDLVEAYLRGLADTDRSLARQIAELLELVRQYGPHAVAGAITKAHAARAFGADYVANILRQQQCPRREQPPLRLRDPRLNDLVTDPLSLLDYDAFILESEKEPDDDARRETRSTESVDDEPPTGPDPF |
| Ga0373906_072651 | Ga0373906_072651_397_672 | F028847 | MQEERRLFNLRELEKILKSHYKKQNSDLEVSFRDTKFVTYVIHEKGKPWARSLTTEEAFTEITKILFPDEDVRIVRMQFDPPKVELLVEKS |
| Ga0373906_078315 | Ga0373906_078315_602_760 | F018024 | LKHRFTGQLYELKTAKDGTFILESEETPYRMWFGERDLELFFKMAKKKKLKK |
| Ga0373906_078629 | Ga0373906_078629_3_431 | F066874 | SSIAAWLVTAGQLAACASEPRAVPLKPPNTELIVGEYERHPPEGQTAIRFRGDGSVRLAKTRALLDTEPPLATGTWKVDGPRLTVTYETGACTDKAADKTGVYTVVISKIGIHFTKVEDSCERRATIDGQTWWRVKVALRGK |
| Ga0373906_087456 | Ga0373906_087456_428_688 | F005859 | VSDRDLVTRCLAEGKHPWHTRADSLMRTNSPVVGPEQELTGYKVRMDLDPNESHLRPTITVVDGEGLVIGFISHPEQIPGVEIVWG |
| Ga0373906_088410 | Ga0373906_088410_35_655 | F001269 | MQAPFVKEVESLGLFWAFTLKENQPDLLREAQRFTQESPTGVHTEPGREIRYWHLPEVDWPVADRLVRVVKTVRIEQLNRVTVSEKDGQRIKSKTPVTQESTNFYATNFELGSVSPLFIHQFSRSRWRIDTEVFQTITTDCHLKHPAVHQTTALVMLTMIRFLAYTLSLVFYHRQVRSHARGKCETFHECAKRIGYWFGASAPNTS |
| Ga0373906_091636 | Ga0373906_091636_5_628 | F013650 | VETLEFLNELHKYSPEASTYNWAELMSTFVAEKAANSYYVGARLLEQVMANNARIADATAPVAFPKKLTDHYMVSIQGFHILNQSNVEGAKQYVKFFLKHPDCIRWYHAVPLHIIPASREVLRSAKYQDHPVIQKRMDVLNFLDSIWGKGVPLYYWDGKEMNPYIGLYHNENLGGWMVAMRNIKKDKSEAIIDEAANKIRSKMKRMG |
| Ga0373906_093864 | Ga0373906_093864_10_696 | F024925 | RNDPDKIRKLAQNFVLKNIGTIQPDTEVRFVDDEHFTVIFRKIDTLLMSSQRSVIESIFKELGYEIQATAFQNLLSFKLKPLERPVLEPVPRKKLMEALINEMSANSCEEAFEKIKEPIDEMFPEEYPWTIREVGERLIDMYRELDVEVEIEYFEGGFTLKYKTCPYYALVKSGQKTWLCTLRKKVIDYVLSRVSHGKKGKIKIIKSLLKNEHPCEYAVFLTGFLEED |
| Ga0373906_102890 | Ga0373906_102890_327_665 | F000769 | LCPVCGKTVSVLPANRLTYRPLEVKRLEGRFDAQAKVSSGLDPPPEPVEAGCLQRAWTRFLTRVKRLVNAFGQILPAGLGTGAPLWKELRRCVGSAEAMLRFLAQTCNGSLLG |
| Ga0373906_119523 | Ga0373906_119523_324_503 | F097617 | MSEVKKCPKCGGEMVQGEFLKNLPKVIVSPKKGRRSFDKTIPTYCKKCGFMEIYREMKE |
| Ga0373906_124364 | Ga0373906_124364_1_207 | F103502 | MSKETILILDKEFHTQWTLKTILESEKYIVLAVDTIERALQNFQEFEVSGLITEYQIDHANTPEIIREL |
| Ga0373906_125580 | Ga0373906_125580_2_607 | F056130 | VSEWEIARKSILAYNDALENVAWKPGATRSTRFTAQYGYLQLIPDANTITISATVNGVAQALSNDTYPGMSGSIKYWLSTEYVSYGENYESYILGNSSSLISSSSDSYGRAVINQQPGMITMTLDYRVRAMRTSVIDVGGVQTNYVDIWVIKLSMLVPSAWSYVNEFDLQAKTRSVVTASHRFTGVTDQTSVISVQIGSTPA |
| Ga0373906_133885 | Ga0373906_133885_458_589 | F103508 | MKLMTKEEKILKEGLEKVSEKKDNMDWISSLAFLNSIGCSPFWA |
| Ga0373906_134457 | Ga0373906_134457_252_500 | F061953 | MSGPVWKRLRLEGTCDACGDSSAELFAVGTVVDFTFRPDFRYCPACYERYRGRHDELHPQAVAEKQNPPLISRPTDVSDLPE |
| Ga0373906_137964 | Ga0373906_137964_38_574 | F016990 | MLWEGTGIMAAPVAPADQKEILRTLTLAQHWIKQGDYNRAITYVDFEGMAEIVMAGYWDKMAQKEKNEITTFMKNLIKEKFPIITQRLKLLKFGAITENGNQVVCETLAVLDRTTENKDEKIHVGLVKRGTEWKAVEVYILREGFLAGLNEDTVKPILKRGGTIQEALDAVRLVFQGQ |
| Ga0373906_141817 | Ga0373906_141817_34_501 | F050736 | MAAPTISHLILTGALIGIIFAVQVFYFYIVDNISSEMLKRELKELSDYVADTIANLYLLLNATNTNPPLEKTLRLPVDIGGSFYTLEIIRDASNNAQTVKGVIQGKSWLNVTSWLPRGLKVDVSRTETIGYSVKTAIVGCLRAASNVYVWIAYKE |
| Ga0373906_147258 | Ga0373906_147258_71_418 | F012061 | LAFTIKGRFKMRRIPLLASALMLSAPLAHAEMLPAYDSEAICADVAGGSARQELIMRGCLDFQERTRKEIALAWDKLPVPVQVSCTKAAEGSGDYWRLKSCIDKEVRSSSAVSGH |
| Ga0373906_149027 | Ga0373906_149027_116_373 | F094833 | MEEVWTSFPNWMKPMMKDEKRLNEGLENASEKQDNRDWISCLAFLILTGCSPFWAKVKLTLSLAYYRITAFFIPILKSAILQLIY |
| Ga0373906_152581 | Ga0373906_152581_3_164 | F018024 | MRIAEGDRLKHKLNGQLYEVKMIRDNTFILESAHTPYRMWFGEDGLELFFETAE |
| Ga0373906_152654 | Ga0373906_152654_27_239 | F076225 | MKTGRLLKFHRPDGDVHAYFYAEGAAVRAVLYLLAPGHERGPVHEVRGPSSDEVEHQVRAWVDSRYPRSS |
| Ga0373906_154952 | Ga0373906_154952_130_444 | F097611 | MSGKEQNPNEEKNIIVVSDLSPSVIELLKEFRRTSGAKDIPRVVEDITFSVFELMKLVNTSRDPRIYPQDAVRVMDTVKAVLEKFTRFGKPQQLEEAQKEIKPS |
| Ga0373906_160800 | Ga0373906_160800_19_495 | F018530 | MSQTTRAFVQMVRLYIRDFPELNRIVKGEESSDRQIAWALLDAIADFNGTPHFTNLRLEDLLQKNQHALMLRMTVVSLIESIGQLQTRNHINYSNGGINVGVNDKTPLLMNWLQYYKSTTEQMKQRVKVAINIEGILGPSNSGVHSEYWAVNSTYAAY |
| Ga0373906_168520 | Ga0373906_168520_4_222 | F081467 | VNVVLLKWAFAIFGLRLFIASLTFVNAYVAQGAIASGRSSAFGNTMRRLGLNLIVASLLLFLAGIALVVLAI |
| Ga0373906_173140 | Ga0373906_173140_410_520 | F056027 | MTKAIVVSMCLAASSLSLTPRAQDERGYDYGPVTEVD |
| Ga0373906_183038 | Ga0373906_183038_130_507 | F040696 | TSDFFTAENGRKSSFGLGTKDTEDVPVTLEDVFEEEADAAIADAHGVGGPVIDVLAVEEIVLEFLLSDQIGGFAVELGEHADGAGVGLLSPFPFAIELKSLDRFVIPLCLHDTSPFSVRIDFPFQ |
| Ga0373906_183348 | Ga0373906_183348_5_454 | F046457 | LPSIFEQKSQDLRRKAIFFAGIFAFVIGCATHLPDVNSSNTDIPFSKRKVPSLEKAIIIDPKGPSLDPKYYEVMGRADSEVSNVTALVSHCKDAIERLRYEAEIVGGDALIDVSCTSGIFNASANGTVITFKNREEALKVLKDIKAVLK |
| Ga0373906_185961 | Ga0373906_185961_330_503 | F099378 | KTRESKKYTFSVRKIRPGYLELVIDKPLPKGEYIFVVMGGFEINLDGSASLFAFEIV |
| Ga0373906_187028 | Ga0373906_187028_1_474 | F040161 | LLDLEASPQAVPWAASIGGEVVAQGPARAGFQWVNGAPRAGKQALLAVPLGDRETDEVRLVFQGPGPRLTIAEAFLYGPGEEERPTAGAGPARDAFESARGGRWDEAVRLYAQAVRLEPERASHHAAWARSRWRAAHRRWLDVESLDDGGPELVDVR |
| Ga0373906_187213 | Ga0373906_187213_2_409 | F081509 | MGLAEDERWFGGLKDDQAVIVSNVFEGSPIAVASGIGLLEDRENGIVIEGPSHHLKFLYPFLLRLRNDSIDSNEFGIWVGVTWAKTKKWLNLFYLFGDSLRDRMELLEHKFRRDIAFSCGLRLSEKARMIVRVGTR |
| Ga0373906_190028 | Ga0373906_190028_1_159 | F094825 | MKTTTCPECGWTVKSPWGENDVIDHIMLHVKNHHPEMLKHSKEDMKKMIKDA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |