| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300034627 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0344145 | Ga0316609 |
| Sample Name | Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.108B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 231703601 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 11 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1 |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → sinkhole → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 45.1993 | Long. (o) | -83.3279 | Alt. (m) | N/A | Depth (m) | 185 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002525 | Metagenome / Metatranscriptome | 552 | Y |
| F016728 | Metagenome / Metatranscriptome | 245 | Y |
| F020197 | Metagenome / Metatranscriptome | 225 | Y |
| F044511 | Metagenome / Metatranscriptome | 154 | Y |
| F045770 | Metagenome / Metatranscriptome | 152 | Y |
| F054064 | Metagenome / Metatranscriptome | 140 | Y |
| F057919 | Metagenome / Metatranscriptome | 135 | Y |
| F069913 | Metagenome / Metatranscriptome | 123 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0316609_030534 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 974 | Open in IMG/M |
| Ga0316609_037259 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 881 | Open in IMG/M |
| Ga0316609_037865 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium | 874 | Open in IMG/M |
| Ga0316609_043688 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 813 | Open in IMG/M |
| Ga0316609_051436 | Not Available | 749 | Open in IMG/M |
| Ga0316609_070249 | Not Available | 637 | Open in IMG/M |
| Ga0316609_093137 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 550 | Open in IMG/M |
| Ga0316609_099305 | Not Available | 532 | Open in IMG/M |
| Ga0316609_107114 | Not Available | 512 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0316609_007615 | Ga0316609_007615_2_142 | F044511 | RAPDAGDSAPFSSSFLRLSLFPIGRRPAARPSAGNANRWQELALNL |
| Ga0316609_030534 | Ga0316609_030534_94_261 | F057919 | MHEIFSLFGFFTFLTIAVQILSGVMLSFSLVPEPMLIPLVRDEEDLEDLYTDDFF |
| Ga0316609_037259 | Ga0316609_037259_1_159 | F016728 | GWLTVCVTRVWVGVDNVWEQEKPEARKMLVNRAESHTSGARFVGWLCARLAD |
| Ga0316609_037865 | Ga0316609_037865_731_844 | F002525 | VWAGVDSAWEQEKLEARKMLENAAESHTSGARFVGRF |
| Ga0316609_043688 | Ga0316609_043688_3_152 | F044511 | GSGQQAGCLTKRAPDAGDSGAISSLFLRLSIFPVGRRSAARPSAGNANR |
| Ga0316609_051436 | Ga0316609_051436_6_341 | F054064 | MIPQIKKENKVGIKDLVGKKMTKNVKFMGEDVKISKLSVSEVLRIQDSAKDLEKDEGKGFDILKTVITSAVEGGSDLTDQDFDNFPMDELSKLSNEIMKFSGIGGEDNKGK |
| Ga0316609_070249 | Ga0316609_070249_3_413 | F045770 | YTEEFTLDNSAAQTVYKGQPMIIDQSEDTVYLRGFVDATVVVATDIFAGIAAEGPVAVATTDTETANKCKLWVFPTIVGFKSTVYTDADLGDTVYMSDSATISATAADNPMLGKLHRVLDGYAYVQISSPTICAGA |
| Ga0316609_093137 | Ga0316609_093137_439_549 | F002525 | RVWAGVDSAWEQEKLKARKMLVNRADSHTSGARFVG |
| Ga0316609_095744 | Ga0316609_095744_434_541 | F044511 | DAGDSGAIPSIFLRLIIFPVGRRPAARPSAGNANR |
| Ga0316609_099305 | Ga0316609_099305_198_530 | F069913 | MTLEEYTQIEQDFSTSETDIKTFLGIKGISIHQYYYWKRKSRDLQEASSPTEGQFLPLNVITGGSIKPGNRGKNLKHPLITQGEIEIELRTPSGSELRIRGVMDSIMVSTI |
| Ga0316609_107114 | Ga0316609_107114_1_234 | F020197 | MEQKKLPFSKGHTLRLTAMYMRKAIDVSIRKTFDRIAEYDSNQEKSREIFEALSILHGMRKQLDDFQLENKAEFSKQN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |