NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034175

3300034175: Biocrust microbial communities from Mojave Desert, California, United States - 35SMC



Overview

Basic Information
IMG/M Taxon OID3300034175 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136120 | Gp0356255 | Ga0334939
Sample NameBiocrust microbial communities from Mojave Desert, California, United States - 35SMC
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size750501172
Sequencing Scaffolds44
Novel Protein Genes45
Associated Families38

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria8
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2
Not Available12
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_81
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Biocrust Microbial Communities From Mojave Desert, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biome → desert → soil biocrust
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F001519Metagenome / Metatranscriptome679Y
F003605Metagenome / Metatranscriptome477Y
F004350Metagenome / Metatranscriptome442Y
F004608Metagenome / Metatranscriptome431Y
F005003Metagenome / Metatranscriptome415Y
F005545Metagenome / Metatranscriptome397Y
F007252Metagenome / Metatranscriptome354Y
F007987Metagenome / Metatranscriptome341Y
F009385Metagenome / Metatranscriptome318Y
F011693Metagenome / Metatranscriptome288Y
F015834Metagenome251Y
F016792Metagenome / Metatranscriptome244Y
F016828Metagenome / Metatranscriptome244Y
F016863Metagenome / Metatranscriptome244Y
F024195Metagenome / Metatranscriptome207Y
F032045Metagenome / Metatranscriptome181Y
F035160Metagenome / Metatranscriptome172Y
F038605Metagenome165Y
F040928Metagenome161Y
F042969Metagenome / Metatranscriptome157Y
F043599Metagenome / Metatranscriptome156Y
F044000Metagenome155Y
F044877Metagenome / Metatranscriptome153N
F047038Metagenome / Metatranscriptome150Y
F051497Metagenome144Y
F052124Metagenome / Metatranscriptome143Y
F055342Metagenome / Metatranscriptome138Y
F067704Metagenome / Metatranscriptome125Y
F068542Metagenome / Metatranscriptome124Y
F071342Metagenome / Metatranscriptome122Y
F072077Metagenome / Metatranscriptome121Y
F076437Metagenome118Y
F081605Metagenome / Metatranscriptome114Y
F081732Metagenome / Metatranscriptome114Y
F090845Metagenome108Y
F093899Metagenome106Y
F094582Metagenome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334939_0000001All Organisms → cellular organisms → Bacteria1098306Open in IMG/M
Ga0334939_0001115All Organisms → cellular organisms → Bacteria → Acidobacteria20302Open in IMG/M
Ga0334939_0001833All Organisms → cellular organisms → Bacteria14113Open in IMG/M
Ga0334939_0007587All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4432Open in IMG/M
Ga0334939_0007649All Organisms → Viruses → Predicted Viral4400Open in IMG/M
Ga0334939_0010876All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3369Open in IMG/M
Ga0334939_0011299All Organisms → cellular organisms → Bacteria3278Open in IMG/M
Ga0334939_0011803All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas3178Open in IMG/M
Ga0334939_0016774All Organisms → cellular organisms → Bacteria → Acidobacteria2493Open in IMG/M
Ga0334939_0019845Not Available2249Open in IMG/M
Ga0334939_0022078Not Available2106Open in IMG/M
Ga0334939_0030653Not Available1730Open in IMG/M
Ga0334939_0030774All Organisms → cellular organisms → Bacteria1727Open in IMG/M
Ga0334939_0031190All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1714Open in IMG/M
Ga0334939_0040762All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1471Open in IMG/M
Ga0334939_0042107All Organisms → cellular organisms → Bacteria1446Open in IMG/M
Ga0334939_0047187All Organisms → cellular organisms → Bacteria1359Open in IMG/M
Ga0334939_0062259All Organisms → cellular organisms → Bacteria1170Open in IMG/M
Ga0334939_0065792All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1136Open in IMG/M
Ga0334939_0097813All Organisms → cellular organisms → Bacteria → PVC group927Open in IMG/M
Ga0334939_0098550All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis924Open in IMG/M
Ga0334939_0103710All Organisms → cellular organisms → Bacteria → Proteobacteria901Open in IMG/M
Ga0334939_0107143Not Available886Open in IMG/M
Ga0334939_0110875All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes871Open in IMG/M
Ga0334939_0111789All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes868Open in IMG/M
Ga0334939_0122031All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8830Open in IMG/M
Ga0334939_0134275All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.791Open in IMG/M
Ga0334939_0183516All Organisms → cellular organisms → Bacteria677Open in IMG/M
Ga0334939_0188038Not Available668Open in IMG/M
Ga0334939_0188717Not Available667Open in IMG/M
Ga0334939_0213980Not Available628Open in IMG/M
Ga0334939_0216336Not Available624Open in IMG/M
Ga0334939_0234624All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
Ga0334939_0237593All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.595Open in IMG/M
Ga0334939_0240093All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium593Open in IMG/M
Ga0334939_0242139Not Available590Open in IMG/M
Ga0334939_0254696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia576Open in IMG/M
Ga0334939_0255224Not Available575Open in IMG/M
Ga0334939_0285952All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria544Open in IMG/M
Ga0334939_0300049All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium531Open in IMG/M
Ga0334939_0308315All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium524Open in IMG/M
Ga0334939_0321589Not Available514Open in IMG/M
Ga0334939_0323495All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
Ga0334939_0336423Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334939_0000001Ga0334939_0000001_1062690_1063148F067704MHVKTTNSQQIWQSPDGKRTIWEVTLRAADGSDYKLKTYSRDVAKLGFGGEVRSYLNPRGDRFVRQVADVSKAKPSYQRDDNAIRAQWAIGQAINLASVKMDREAITLPVIEQYARELYETVSRVKGEPISSADKAEAENYIKGLTQIAGTF
Ga0334939_0001115Ga0334939_0001115_18455_18817F055342MSQKQRAKYHVRKRIFLNRDLDLRAFAIGIVEDTREIPNENENDWKWGKIELSLGDCYRVVSFDFNMETKADRTNSLYKIRRIAEIVNTVRDALEIEAESIEQRKAAKPKARAKAKSAAG
Ga0334939_0001833Ga0334939_0001833_10708_10911F015834MNATAIECQHYQKLVGRQIIGIQCEEMEGQALPVLLLSGKDQDGNAASVAVLCDPEGNGPGYLEHHL
Ga0334939_0007587Ga0334939_0007587_633_902F009385MFILRDKTQLEKAIAKAKTIRPRVEFDHFGRYRVSGSKGGFYTVICKKSDNGYKTVDCTCKGGEKGLVCYHAVSALSLHIGLAKQRQTA
Ga0334939_0007649Ga0334939_0007649_1880_2029F024195MTGDRIFNVLGAIVTVALVTTIVSRPTSAQVIRAMGDAFAGSIRAALGR
Ga0334939_0010876Ga0334939_0010876_508_711F015834MTPTAIERQHYHKLVGRQIIAIIWEEIEGQALPVLLLSGNDRDGNAASAHVLCDPEGNGPGHLEHYL
Ga0334939_0011299Ga0334939_0011299_2965_3207F005545MEEKNEQAVDDRGTSETGGREILKRLRDQGFESDDERLAVALGRPVEEVQGWMTGDPDEPVDDDIVMKARGIAKERGIEI
Ga0334939_0011803Ga0334939_0011803_2936_3088F004350MKPYIIGAICVWFICGITGAVMLGQKGVHIPTIAGGPMTLWKSFNKPIDK
Ga0334939_0016774Ga0334939_0016774_1938_2492F094582YPSAPRDFSKTREHGHNYRQQLLNGHARHQGRIIGVETTTKPRYLPGNRQFYGTAYGHDATADPFVAYMGRAGMMNGMRYAHNYLSLRTFLNVVNEDWRARRLLPAGYRVTICPPVVFNLVGTIFHPEWSATETLELGFYRDEQGNATCFAVGSNASGDFSYINEVEGEAEWSLMGFRLALVPD
Ga0334939_0019845Ga0334939_0019845_572_829F009385MFILKERQQLERAIEKAKKIRPKVCFVTFGQYQVSGSKGYYTVICKKSDNGYKLVNCTCKGAEKGLVCYHSAAALSLHIGLARLR
Ga0334939_0022078Ga0334939_0022078_1333_1446F032045VAEYNKQAVDQAIKASRKKIGGKEAKLIHSLLKGRSC
Ga0334939_0030653Ga0334939_0030653_109_549F007252MNNKVHPFFENVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPCAPPVITSRHLSESLSGEELKEFLAKKKVRKLAEKVMCGDERVLVSDKTFAAFDIFEVPPPQKARSSNR
Ga0334939_0030774Ga0334939_0030774_1_195F068542VHLLALKGAPNTTLLDPVQAIGVGMTAARHMLFDKAVRLQHTDQQTAMDCAALVNRIDALIRPA
Ga0334939_0031190Ga0334939_0031190_1068_1349F076437MEFLNKIRAADPDGRTIDRALLNEQNELGLILNRSVEMDKIPALMHTMLTQMAREFPGEDLTVLAYAPSNPPRKIGTAKLNAATRDMTYTPEN
Ga0334939_0040762Ga0334939_0040762_1031_1300F009385MFILKGIEQLQNAIAKAKKLRPRVEFGGFGHYRVAGSGGGFYTVICKKSNNGYKTVECTCKGAEKGLVCYHAAAALSLHVGLARQRRAA
Ga0334939_0042107Ga0334939_0042107_2_193F043599RLAEIESHTRQAWAEYTEELRELAGRAYEEAEDASWDRLQKRLKQLDGERQLVEGGSAPTAPF
Ga0334939_0047187Ga0334939_0047187_38_208F081605MDKIPDLMRSMLTEMASDFPGQNLTALAYAPTEPPRKIATARLNAETRDMSYTPEQ
Ga0334939_0062259Ga0334939_0062259_342_608F007987MKTPTVNEPDGAEGDLLSSPTTIVALLLLAEKVPHRQFNSAELSIVSGIGRTAMSQIKNASDTPFSLCKCTLQRLDAWLAAHPGYKQF
Ga0334939_0065792Ga0334939_0065792_864_974F072077MFFFSNRIGCFKSLLISAVATILLLLVLGVIQLPGR
Ga0334939_0097813Ga0334939_0097813_739_927F015834MTATAIERQHYQKLVGRQIIAIIWEELEGQALPVLLLSGNDRDGNAASAHVLSDPEGNGPGHL
Ga0334939_0098550Ga0334939_0098550_2_499F044000IFPPTQSVVLGWTRRHFGGPLDQIRDAAVRLKTWGLTETPEELATRALAIIDSAVRPKASAIVMDSAMSQDLIAARGATSADDPRLIERVTLADEETSVGTLLLGRRADGNRYNKLELDAVREIVPSLAAALRVSRGRYSRETEMQQRLDEMAARLAQLEASGHA
Ga0334939_0103710Ga0334939_0103710_390_641F004608MHTSFDQTRPQNSRWDQDGAEYVRSSLDWCARCSRRLVALNPGLTAEQALDLAHELSGDDKLRALAPERVAEDLHQVDLPIDG
Ga0334939_0107143Ga0334939_0107143_695_886F035160TATEQERSKAIAQAWLSGVPEGTMIGDMPLPAKPDDLTDEQISSWLEGRAEGFPGGDIQPSCL
Ga0334939_0110875Ga0334939_0110875_82_318F003605MAVGDQAAAAGYPLVPDTGEEGRVRWGARELNRTRDFIAQVLGIIPVGKAGYRAASGISSGTADPTGGQDGDIYFKVI
Ga0334939_0111789Ga0334939_0111789_47_205F081732VLSLTRLEGEKTTIGGLEENILKKLKGLRFTFLSLSIVDAKQIGRGAITCCR
Ga0334939_0122031Ga0334939_0122031_670_801F040928LTGAFHREHEELMVVMSNTVLNLAHPNHVREALSSRRLGLAKK
Ga0334939_0134275Ga0334939_0134275_362_778F001042MFNQAMTIKLMTTSHFIEENFTSDFPEGSKTEADKKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEAIDLINLIVSASEAEGENG
Ga0334939_0183516Ga0334939_0183516_56_268F038605VGEVNDRVCWNCGHLQEHHTIAGGCSFTPEGAERCDCPRYEDSEYYGEQRKRDMYTLSDRRRLSLRRARR
Ga0334939_0188038Ga0334939_0188038_367_666F044877VTLDRKTLEEIFSLIGDCVDTITNLRHSDVFITSAKRCLLDTGNLELASSTEVGKAVLLMNSWLEVIPKSHKEMDAWLQQANAITYLALAPIKLGKSNG
Ga0334939_0188717Ga0334939_0188717_2_385F016792RRSNPTYEAPGTTATIWEHQSGGGLAEDGWLNASERPLLRSVIADRPKVLTGRSQRARGLVRLFRAVDDGGIVTRRTIGRSLPVRLSPLDNRVSPTRPVAVRRRYPDRKGGDGGGGRGAAEQAKAVL
Ga0334939_0202932Ga0334939_0202932_1_390F016863VADASGGSRDLLREWRSQMESLVSSAAGIAGRGSDLPRQLLEPMQRQLELVQEVVERQQRIQREVAARLVAPVDAVFDLLEDSAVTLRKQAEAIEAAGAALEETAALVKGQAELFERTVATLREPTELAK
Ga0334939_0213980Ga0334939_0213980_399_602F051497MIIEAMWYEVSPYVYLVVGLAAGLISSSDLGLLFSALLLAASFTIFRLRRLYRDPERQRYRKYARPH
Ga0334939_0216336Ga0334939_0216336_305_610F042969MKTLLVAIAAIAASAPAMAQVSPNGTVLTNTPEMRAGFANRGQCQAAFRQLRNDQRASGDRGGEPYDSQTNSEYNNASRTTTRCEEINGRYYVVYNANGFD
Ga0334939_0234624Ga0334939_0234624_95_388F093899MAHIIEVVRDTASEARSFLDALFYSDSVSAIGHRPDGELIRAVAVNWDAGEESDLDERISQMVSDAIEADDDLDEIAAYCQIFPETVLYQPELGDIE
Ga0334939_0237593Ga0334939_0237593_2_358F001042FTSDFPEGSKTEADKKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEAIDLINLIVSASEAEGENG
Ga0334939_0240093Ga0334939_0240093_357_593F090845ILLADEETSVGTLLVGRRADGNRYNRQELDAIEEIVPSLAAALRVSRGRYSRESLMQQQLDEMAARLRQLEGGAVKPA
Ga0334939_0242139Ga0334939_0242139_372_590F016828MYSDLLRMLASPSAIQPTVLADALRDVERMHSVAHITDWQLEQAREAYAETIAREPREGAPRSAETRADERD
Ga0334939_0254696Ga0334939_0254696_87_251F047038MEYTMQRLIPGTRVSGADVSAKRRGWQQERPCHLALDAFPTSNGTGVSAGVCRT
Ga0334939_0255224Ga0334939_0255224_2_247F052124AAYKEAIARRGEVRGLKDQWLLRDQTDPDAGYSISLWESEADMQAYWQSPGRAEGMALLQPFFSNQYTTTHCEVRMAARGT
Ga0334939_0285952Ga0334939_0285952_2_538F011693VRTVPEIVQFDRGAADRPALVQTYDAGITVDHWATLLPLERDGVRYGNVFHDSAHWWALARHCLIALDAIHELGLVHLDLKADNVCIPADRTDLDLRSTEPLRPRFDDIALIDFAFSLVSGERLTSALPIAHQPDYEYQSPRLLWALEAGRRGELGPTRQLDWRCDLFSLAAMLWRYLP
Ga0334939_0300049Ga0334939_0300049_10_270F071342VWQVDTPAARAHLLEQSFRTGWLVFEREDGAERRRLMQVPDDWASLSPERLEQLCGLAVPVVAGRNTPTGQQAAWPRPTSDSPGDR
Ga0334939_0308315Ga0334939_0308315_186_485F001519MTLVNSLCAEISVFQGVGEPTGVVVERSAIRGKKGLCKSMRDLSIKSRVLGDGYYYIPIDLWPNTKEPIVVHKHDWTVIGSIPRTSRAVIGKKSEKTLT
Ga0334939_0321589Ga0334939_0321589_359_469F072077MFFFSNRIGCFKSLLISAVATILLLLVLGVIRLPGR
Ga0334939_0323495Ga0334939_0323495_20_382F055342MSNKQRTKFHVRKRIFLNRDIEMRAFAIGIVEDTRKIPNEDENGWNSGWIELVLADCYRHVSFDFNLNTKEARADSLYKIRRIAAIVNAVRDAIEAEAKSIDERKIVKSKPEPKAKSAAG
Ga0334939_0336423Ga0334939_0336423_249_503F005003MDSEEDRFEKTVRVMCRVDDADIDYVRNTAEWIHRCVAEALRIDPALSAREVTPLVLDMSLRGHYRLMRPESVAAQLALPLPHAG
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