| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033987 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118431 | Gp0324340 | Ga0310150 |
| Sample Name | Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-6 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 136885341 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → planetary subsurface zone → fracking liquid |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.812 | Long. (o) | -98.262 | Alt. (m) | N/A | Depth (m) | 2943 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022008 | Metagenome / Metatranscriptome | 216 | Y |
| F063614 | Metagenome / Metatranscriptome | 129 | Y |
| F077200 | Metagenome / Metatranscriptome | 117 | N |
| F082560 | Metagenome | 113 | N |
| F087072 | Metagenome / Metatranscriptome | 110 | Y |
| F088079 | Metagenome / Metatranscriptome | 109 | N |
| F103496 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0310150_000396 | Not Available | 26096 | Open in IMG/M |
| Ga0310150_003095 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 5133 | Open in IMG/M |
| Ga0310150_005438 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium | 3199 | Open in IMG/M |
| Ga0310150_006065 | Not Available | 2910 | Open in IMG/M |
| Ga0310150_013570 | All Organisms → cellular organisms → Bacteria | 1567 | Open in IMG/M |
| Ga0310150_036131 | Not Available | 727 | Open in IMG/M |
| Ga0310150_041493 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 652 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0310150_000396 | Ga0310150_000396_228_461 | F103496 | MSLNDRIRKLPLTKLIALCFTIFTCVLIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTTEKKVNS |
| Ga0310150_000396 | Ga0310150_000396_464_817 | F022008 | MTLSDIEILQSTLRDLSKQVQKLSEENRVSFNHIHDRLTRIETQMSERERQFNRYEKTLENHEVRIRNVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGD |
| Ga0310150_003095 | Ga0310150_003095_4398_4658 | F088079 | MLIEKAIWLENVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK |
| Ga0310150_005438 | Ga0310150_005438_2674_2892 | F063614 | MTYRKLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELEEIMAELPLLKRV |
| Ga0310150_006065 | Ga0310150_006065_1999_2763 | F077200 | MNKFTVIVVETQPNLKRIEEYAQRYGMTLEEALQRKRIGEDYFPIRDQQVVSAGVLNFINKEDKISIMAAVFVGEEKKVLDALAERLEKIVKATGKPFFVTGDGRKYALEILAGRAIAYMIEAKKENQEITPELQNMIKIITSPKSGYLKPFDTRDSIDMQAAFGLGHDVIPLPEKLQYTNEDLPRLAEDIKRLLLDMTKNYACYIEAQGEKIKPIVYKLDEKIFKTTEIFKFEDHDEADIEKTLDKEELEIER |
| Ga0310150_013570 | Ga0310150_013570_247_639 | F082560 | MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELRERSPKEMQEWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGFSIGGKHYDRFRRTQ |
| Ga0310150_036131 | Ga0310150_036131_41_433 | F082560 | MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELREGVPKEMREWMEKGATMLQAKTLYDWQRAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ |
| Ga0310150_041493 | Ga0310150_041493_6_236 | F087072 | MRWSMKSRVFTKRMFSLELSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVEELQEKLSEEINKLIEGK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |