Sample 3300033540

3300033540: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300033540 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128851 \| Gp0330618 \| Ga0314764
Sample Name	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	136925071
Sequencing Scaffolds	49
Novel Protein Genes	55
Associated Families	43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	6
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	3
Not Available	13
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	8
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Robertmurraya → Robertmurraya kyonggiensis	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1
All Organisms → cellular organisms → Eukaryota	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → Viruses → Riboviria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.3951	Long. (^o)	-85.3736	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000199	Metagenome / Metatranscriptome	1639	Y
F003289	Metagenome / Metatranscriptome	495	Y
F003657	Metagenome / Metatranscriptome	474	Y
F004023	Metagenome / Metatranscriptome	456	Y
F006377	Metagenome / Metatranscriptome	374	Y
F007513	Metagenome / Metatranscriptome	349	Y
F009305	Metagenome / Metatranscriptome	319	Y
F010295	Metagenome / Metatranscriptome	305	Y
F013050	Metagenome / Metatranscriptome	275	Y
F013054	Metagenome / Metatranscriptome	274	Y
F017083	Metagenome / Metatranscriptome	242	Y
F018302	Metagenome / Metatranscriptome	235	Y
F018668	Metagenome / Metatranscriptome	233	Y
F019067	Metagenome / Metatranscriptome	231	Y
F026461	Metagenome / Metatranscriptome	197	Y
F030309	Metagenome / Metatranscriptome	185	N
F030953	Metatranscriptome	183	N
F033276	Metatranscriptome	177	N
F039430	Metagenome / Metatranscriptome	163	Y
F040414	Metagenome / Metatranscriptome	161	Y
F042105	Metatranscriptome	158	N
F042666	Metatranscriptome	157	N
F043180	Metagenome / Metatranscriptome	156	Y
F044246	Metagenome / Metatranscriptome	154	N
F047420	Metagenome / Metatranscriptome	149	Y
F049342	Metagenome / Metatranscriptome	146	Y
F049431	Metagenome / Metatranscriptome	146	N
F052990	Metagenome / Metatranscriptome	141	Y
F055385	Metagenome / Metatranscriptome	138	Y
F055741	Metagenome / Metatranscriptome	138	N
F056211	Metagenome / Metatranscriptome	137	Y
F057799	Metagenome / Metatranscriptome	135	N
F068375	Metagenome / Metatranscriptome	124	Y
F069541	Metagenome / Metatranscriptome	123	Y
F074257	Metagenome / Metatranscriptome	119	Y
F075510	Metagenome / Metatranscriptome	118	N
F078027	Metagenome / Metatranscriptome	116	Y
F082022	Metagenome / Metatranscriptome	113	Y
F098370	Metagenome / Metatranscriptome	103	N
F100085	Metatranscriptome	102	N
F102218	Metatranscriptome	101	N
F102612	Metagenome / Metatranscriptome	101	N
F104115	Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0314764_1003181	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	2051	Open in IMG/M
Ga0314764_1015467	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1195	Open in IMG/M
Ga0314764_1018486	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1109	Open in IMG/M
Ga0314764_1020493	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1061	Open in IMG/M
Ga0314764_1020962	Not Available	1051	Open in IMG/M
Ga0314764_1021540	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1038	Open in IMG/M
Ga0314764_1029521	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	899	Open in IMG/M
Ga0314764_1032033	Not Available	866	Open in IMG/M
Ga0314764_1035529	Not Available	824	Open in IMG/M
Ga0314764_1037011	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	808	Open in IMG/M
Ga0314764_1037073	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	807	Open in IMG/M
Ga0314764_1039465	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	784	Open in IMG/M
Ga0314764_1040343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Robertmurraya → Robertmurraya kyonggiensis	775	Open in IMG/M
Ga0314764_1044178	Not Available	742	Open in IMG/M
Ga0314764_1044233	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	742	Open in IMG/M
Ga0314764_1044547	Not Available	739	Open in IMG/M
Ga0314764_1044843	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	737	Open in IMG/M
Ga0314764_1047361	Not Available	717	Open in IMG/M
Ga0314764_1047470	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	716	Open in IMG/M
Ga0314764_1048891	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	706	Open in IMG/M
Ga0314764_1049311	Not Available	703	Open in IMG/M
Ga0314764_1050874	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	693	Open in IMG/M
Ga0314764_1051596	All Organisms → cellular organisms → Eukaryota	687	Open in IMG/M
Ga0314764_1053068	Not Available	678	Open in IMG/M
Ga0314764_1053244	Not Available	677	Open in IMG/M
Ga0314764_1056861	All Organisms → cellular organisms → Eukaryota	656	Open in IMG/M
Ga0314764_1057437	All Organisms → cellular organisms → Eukaryota	653	Open in IMG/M
Ga0314764_1057980	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	650	Open in IMG/M
Ga0314764_1063083	All Organisms → cellular organisms → Eukaryota → Opisthokonta	623	Open in IMG/M
Ga0314764_1063351	Not Available	622	Open in IMG/M
Ga0314764_1063713	Not Available	620	Open in IMG/M
Ga0314764_1064214	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	617	Open in IMG/M
Ga0314764_1064964	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	614	Open in IMG/M
Ga0314764_1065948	All Organisms → cellular organisms → Eukaryota	609	Open in IMG/M
Ga0314764_1067541	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	602	Open in IMG/M
Ga0314764_1068403	Not Available	598	Open in IMG/M
Ga0314764_1070143	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	591	Open in IMG/M
Ga0314764_1071673	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	585	Open in IMG/M
Ga0314764_1071680	All Organisms → Viruses → Riboviria	584	Open in IMG/M
Ga0314764_1072121	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	583	Open in IMG/M
Ga0314764_1075165	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	570	Open in IMG/M
Ga0314764_1077234	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	563	Open in IMG/M
Ga0314764_1078956	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria	557	Open in IMG/M
Ga0314764_1079455	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	555	Open in IMG/M
Ga0314764_1089899	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	521	Open in IMG/M
Ga0314764_1090983	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	518	Open in IMG/M
Ga0314764_1091412	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	517	Open in IMG/M
Ga0314764_1094254	Not Available	509	Open in IMG/M
Ga0314764_1097245	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314764_1003181	Ga0314764_10031812	F074257	MGGVRIPVLFHWRESAEYDRAEFFSPKGKRVGVGSDKDKFSISLAISGRIISAEVISPSCSRRGVSVLAGSIRWLEKPPDSLAMQTHEPNTKVVPALIAGKLNSKDAIEFFC
Ga0314764_1008297	Ga0314764_10082971	F030953	SVCVNARQTSVDLVAASDGLDLRVSEAILDALFFTSVKIPRTLRAFAKSSLRPWFKGSRGEAVRVNHGQMQGAYLSFPLLCLHSYCAATWAARFDREARFLVNGDDTVISANRDILVQDYPSGYRLNMDKTIRAGNTAEVNSTVFLWSKGKWREVRHLRRGGAVTDFPGMLHMAKAVTVSPRFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPSDGCVFPEEMVRITGRDPTPVEQEALRAVQWRHGRWGGSKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGKTKLSPLWEKGADWGLVPADFRSEEEERGLAKLEQFRADWDSGFIAIGD
Ga0314764_1013650	Ga0314764_10136501	F030953	IRSAGKSRPMLIFDEQIELLAPLHKTMFSHISKQEWSLCGPPTEEKVTSVCVNARQTSVDLVAASDGLDLRVSEAILDALFFTSVKIPRSLRAFAKSSLRPWFQGSRGEAVRVNHGQMQGAYLSFPLLCLHSYCAASWAARFDKEARFLVNGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTVFLKSKERWREVRHLRRGGAVTDFPGMMHMAKAVTVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRITGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGRPKLSPLWEKGADWGLVPASFQTEEEERGLAELEQFRRNWDSGFISVGD
Ga0314764_1015467	Ga0314764_10154671	F030953	MDKTIRAGNTAEVNSTVFLWSKGKWREVRHLRRGGAVTDYPGMLHMAKAVTVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRITGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFAYLSFVGPGRPKLSPLWEKGADWGLVPASFQSEEEERGLAELEQFRKNWDSGFISVGD
Ga0314764_1018486	Ga0314764_10184861	F042666	LKETLLIWSMPCADLHKNAFQRSSSRVAHVTRPVNNSTSGLTVKRCHDCSKSERDTKETIHNGLLLLRVGYGLPYSELPDCSPGDLSRFLSFLLLQGKERTSVAFPRRQRHGENGLCTLQRLCRRDRWALAHGCSSIKRNLPKGCFRHTPSVFAAWEAAALSQPPPLTLGYIEHVRRVVTGIFQPGWDKNYRSFVGSHVPNPSARACMTRADVLWRRRRDEFFTATTSESEINPSELSGRYKEIRSAGKSRPMLIFDEQIELLAPLHKTIFSHLSKQEWSLCGPPTEERVSSVCVNARQTSVDLVAASDGLDLRVSEAILDALFFTSVKIPRTLRAFAKSSLRPWFKGSRGEAVRVNHGQMQGAYLSFP
Ga0314764_1020493	Ga0314764_10204932	F068375	MTQSEEIMLQVDNKDKEGVVHGFWTVQSIKDVLDRGKKLRQEVPRER
Ga0314764_1020962	Ga0314764_10209621	F026461	KNVLKHTILYVHSVDLLIWSPTQLNFSFYDFSVIYYDFSKLL
Ga0314764_1021540	Ga0314764_10215401	F018302	GVDGIQASAAVRLQAAARGLLAWRRLQKMRLEMQEAALTAIDLGNWGRDLGKWGRDLAPSDGHQRSCQLAAVFTRMHGSELQFYSSDRGGAFLLVIGGGTSPSAITFRHRPPRGRLRWSLLRLISGGDTCPPLSFRWSPWDPGGYLRADPAQGGCPPYLQESKIKNCSLFKISRDVKGLFLGFRFVSSGVIVSVIVRLQLEDELHVQVGCSVRGVKGLLGLSPLGLISRLLRGQVNLSI
Ga0314764_1029521	Ga0314764_10295211	F075510	FEYEHEIAXKSGVFTFMILQVVTFFGLVLCCTHLSEITLTIAANVVHTVFLFHGKFYXXIFTDKNLNTDTLIRLAYAHYLSAFYMAYLGLLHGIDMHYDXKNESSYDGLEVEMSXXDEALSNELGSFIELIFLLNLLCWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPYMAXLIVCPHHKTGIFGLLYLFVVLFHQPTLHGINEHNLYYKRRLLFSSNKIKQKVFFKQSYINVELNLFFQVTYTFFVMCGLYTFTFLPYGRFYNRLGGNVGMLFAYFYVFVYLGVTSLRR
Ga0314764_1032033	Ga0314764_10320331	F013050	GKQPRTRVNKVPKLLLSEIKVVFILFAQEIGLGAAIF
Ga0314764_1035529	Ga0314764_10355291	F000199	MFGCLTNLGGKQAELVQKFVPRSRVRIIRNERTLSTPFVPKLIFWCISYHLGAFGAVWLSYETQWKTGRT
Ga0314764_1035529	Ga0314764_10355292	F082022	WAELVQMFEPRSCVRFFDNEHTRSTPLDPKLTFWCVFHTICVQSGLFGCLKKLGGKQAELVQMFVPRSRIRIFRNERTRSTPFVPNLTFWCVSYH
Ga0314764_1037011	Ga0314764_10370112	F013054	LDVSGGQSLVDVGNSVNLILEGSFFVLVEEDFLDDRTVELVSVSSSNDGSGLDEIFKERIIDGSQSSVSGSLLRSVSLDPLGGNSSLSGDENVGLESLLKFGDQLTVDSVDDSVTGVRNVDDDDVLLLALADNFNFSGVGDEEVLDAFLKVGDAILDFEEGLSNSLLNDGGVGGDGLVELRLVVGHIGLSGRCGL
Ga0314764_1037073	Ga0314764_10370731	F104115	ELAHLSLRPLVTVNGVIEGEVTHGQMMGAYLSFPLLCLQSYLAARWAMRGHKATYLVNGDDCLVSSDAYVSSESYPSGWKLNDKKTIRSEVVAEVNSTAFLSGGGKWREVRHLRRGGFQTDFKGMLHIASAVRASREWTDAFVHSRIGKKWGFLPSQLSLHPKSYPAFSRSREMWHRCHTSLPLAPSQERSEGVLGLRRALDPDERMAFTAWQWSHGRDGGRKRDVYSPSVGEVRRTYAYKVVKPWSRLSFVSKLKSLKFDGYAYGRKE
Ga0314764_1038695	Ga0314764_10386951	F044246	LPDCGPGDLSRFLSFLLLQGKERTSVAFPRRQRPGENGLCTLQRLCRRDRWALAHGCSSIKRNLPKGCFRHTPSVFAAWEAAALSQPPPLTSGYLEHVRRVVTGIFRPGWDGRYNSFVGSHVPNPSARACKTRADVLWRRRRDEFFTATTSESDINPSELSGRYKEIRSAGKSRPMLIFDEQIELLAPLHKTMFNHISKQEWSLCGPPTEEKVTSVCVNARQTSVDLVAASDGLDLRVSEAILDALFFTSVKIPRSLRAFAKS
Ga0314764_1039465	Ga0314764_10394651	F019067	QLGMANPTFATWNPLEYLVDEPQVSDLDLSFMHEIGAETGRIAISYGHKLSPEGHKVIGREVGDDRVDMSRSPDSLCCILAVQEKVTFMVTSDEDTFVGKKSWNFCEVTSGPLTDPFEGFDHVRKDGDFTNLGFNDSIVMRIILDVQKGDGEEHSSSEPGKMSMLGSRLATPRRENRGTWMLASMFQDAMLCTHKASEPKYLPQVMGGTGVTGLFDNPDNIFLYTLAYRGGAYQRIYATAIAEMQEYLHNLERGVQSAPI
Ga0314764_1040343	Ga0314764_10403431	F047420	VNIAEKDLADLAFNGLRSHIKERLEGYDFFIVTQVHQRALAIESRSKEPQESQRHHRSSVHTLDCNSNCSDDESNDVYAAEFAWPSQAKPFTCSALKPIQTNRQDEKFTFDVSKCERIFDELYRIGYVKMSHT
Ga0314764_1044178	Ga0314764_10441781	F042105	VYNYCGQAPIRQGIGAWPRLDGAPDPTSVESKSYDSKRRKMAHFIGMDFLFTEREYCQTIQSDSQGCKVLVNSTRRGDLLSVRPVPEHLAEKVWFTRKLRFPRQYLGITKMDERVAKLSYLVHVLTQHGFTSRAVAKSVYRLTLTWMFSKYETMRKHVSSITRKVIASLGSTRKPWMSKKDLSQYPCFHGEKRHANGIIAPLWSRTPTR
Ga0314764_1044233	Ga0314764_10442331	F102218	EEKKTNVSSLWMEEGVADVMGYAREATKSPRGFRMVMLANVSRLARQKTKTVHRLPGDLIAQVLASKRLKYAISARPEAEDPVLTNLFPVVPVPDGYDLTREEEAATLRREVERAREEESWTGLHNQKKKAREVKKEMLILPGERLPGRKIWKLLQPKKTVPLETTLSCFAKAWELKRKEALLADSTGDDPPLIVSDLSGIDRLIDTIKYWKKTKEKVGVCAVEAPSSGEEFLAFGLTDESSWISS
Ga0314764_1044547	Ga0314764_10445471	F042105	KVFNFSKTAAIGKAIATWPRLDGAPSQVSPESKNYDASRRKMAHFLGMDFLFTQREYCQTIQSDSQGCKVLVNSTKRGDLLSVRPVPQHLLDKAWFTRKLRFPRQYLGITKMEERVSKLSFLVHVLTQRGIPTRAVLKSLKRLCLTWMFSKYEDMRKHVSSITRKLMVSGGTIRNPWVSRKDLPRNPCFHGEKIHANGLVAPLWSRSPPVRRDLAH
Ga0314764_1044843	Ga0314764_10448431	F057799	KLQPASCRCMEAPLIYSVADHFSQPPPSLPRGYLSFVRRVVREMFPIGWDSSSYERFVRTVDPPVSACDENTRSGGGTHGFVSDDIVPCSYKGPKPFFRQSDFLTTCLDGATRPLSTRSYLTVVQSAGKPRPLSKFSADAIHLKPLHKAIYDRISQFSWLCRGDFTSDCLREAGFTFVEGETLTSGDYKSATDNLSIEVAEAILDELLRTTVSVPGSLKAYAMSILRPTLYNLELDIDDFSPSRG
Ga0314764_1047361	Ga0314764_10473611	F017083	MQYEIIIKGDRWCSCYTCLPRTAPAAAQSTRKTAAPGTDTGAPQMDQRLLTNTWPKQCTIISIQ
Ga0314764_1047470	Ga0314764_10474701	F049431	RPGCTGRKGRRRSEPQPQASEVCETPKPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETSRTSVPSASTLQLPEGGQHRASRKESPSPK
Ga0314764_1048891	Ga0314764_10488911	F055385	MDYLGPPSRFDDTAFQRWKILMQSHLQAKGLNVWRVTSEGMKGKSQQEKQYDAIAKCAILSSLGDNVFNR
Ga0314764_1049311	Ga0314764_10493111	F049342	VETILDMLTSDILFDNFFQNYVTHLRLLRAKKKFALVFQRRLETDCFWIWSFSFLASMKNHYLGILLSFEETFLDGSLVLKWKNTESWVNNFIAFCHEKGVGTVQNLERALELYKKDIASLPRVLFSRYRRVLTVKAMQAKGIKVNEEDEYLEKIDYETQDLKQKVTERLEDVNRMDCYLYYVFGKIYEKIDDDIDTAIEWYQKGTDIDTDSCLKNHLLCNEAWRLKCKKRLHK
Ga0314764_1050874	Ga0314764_10508741	F003657	MSYEPLNRRLASLAAAFAFLGVILAVIALATNYWTINTVISEFRNETTTGTRPTELWNGLFNTCQSGVPCFARFWATTFIVCLLGVVFLLAGGILSALDVPRASDRRFVTPLLIFVGCVLLTAGLVDYASSALLNYHSSRAMIAAIVFAYTALPISAFVAGRYSALERSVLINNDVHTTQKYSATNGNGL
Ga0314764_1051596	Ga0314764_10515962	F078027	GLEILLFHTNSSNENRLEDQLMGLSVFGEGESGFKVLSQQFSLLNNGEEGGVDFSLGLLSVGNALLFFFGFFLGGSGSEESVLTLLGSLGLYSLEEVVVDLFSFSTADINLSGGGDDSALVNSSKRNTVELIRSSDQKKSGLKLLKEDDSLSLESTDQKDQNLAWGDVLSESNRLGGLSGTLTDLLLVVSRVPLGDSGGGNLSSLNSAALNR
Ga0314764_1053068	Ga0314764_10530681	F069541	SPAPHTMSVSVECKNWLTSYPRLNWRNTFNFLLAPEAIKAVEFSDHGIAYFVRGLQHEINNKDYQEAFNCYESGAMQLDPLCLFRLHEIYQGDADFKVEYDERQAMSHLVYSALISQFETFDYKVSFWQKLEGFWKKDATKKEFLLDIIINPSADYLVATGPLFSKLLCFYSNKETFTEILPELKALSTDVTKNKFFSILNALFDFLAYTYNSGFSKVDLEKYVE
Ga0314764_1053244	Ga0314764_10532441	F069541	KSSTLYTSLAREEMSVSADYKTWLSSYPRLNWRSTFSFLLAPETLKAVEFSDHGIAYFVRGLQQELNDKDYQEAFNCYESGAAQLDPLCLFRLHEIYQGDANFKVEYDERQSLCHLVYSALISQFETFDHKVSFWQKLEGFWKKDPVKRDYLLDIINNPPADYLAATGPLFAKLFTFYNNKETFTEILPELKALSTDVTKNKFFSILNALFDFLAYTYNSGFSKV
Ga0314764_1056861	Ga0314764_10568611	F039430	LLKLYGGLRCKQKSSYIYNRNRHNAILHLLVAALSSRFLPEFSESLGVLELNFSLNGVSFSGANRLSLGGDSLTSLVSFSLLLIVVSTSLEETFSTGGKTDVVVSNVDSLGDNSVSELLVNNDTDGSGVDVENSTSLSVVKVVGHTFMNSTVDYDINVITDSIGGQDLRDTDSTVLSEALGELASSSCSETV
Ga0314764_1057219	Ga0314764_10572191	F100085	IPSLVVDNGLSLAASGCEFVDPLELSDEDKERNLCELAAWKWRTKFNISDQCRSNLRFMLAVSATRVDRPDFRPLFWGSDSCLLTRKWHSAKMFRRPIEKRERGFPVLAGYAGRLPSYEEVLAGETDVGSVELIVKADKKN
Ga0314764_1057437	Ga0314764_10574371	F006377	VNFSEYKNCILQASLCAYINIHTTKLLESSSRGTLGSTDTWLTMGSGLVGKTELSHISSDHVELDFDVGVFLTSVDTNNGSDHFGENNSVSEVSLDGEGLLTRLEVLLVLSELLDESLVFMLETSVESSLDSGSEEFDELFVLEGREILEGETSVGIFLGGTFLSYFTHVICD
Ga0314764_1057980	Ga0314764_10579801	F009305	DTLIRLAYAHYLSAFYMAYLGVLHGIDMHYDWKNEATYDGLESEMSXXDEALMNELGTFLEVVVLLNIFCXXIYPEPEALSYEIFMXGDIGMVSDVRYYGVAPHXYFRPYMAXLIVCPHHKTGIFGLVFLFFVLFHQPTLHGVNEHGPYFKKRLLFTTRKIKQKTFFKQAPLNVELNLYYQLTYGFFIICALYTNTFLPYGRFYNRLGGNVGMLFS
Ga0314764_1063083	Ga0314764_10630831	F018668	TITSNNQSNPTTPHSLLSTPPPKQHQTIKMAFFKSLIIASVAAVAFAAPQGASDKNTEVKVSGQDNSPKCGNGQKIACCNSGEDLIGLNCLSIPILAIPIQQACGSNVAACCQTGDAEGNLINLEANCLAIPL
Ga0314764_1063351	Ga0314764_10633511	F042105	MAHFVGMDFLFTQREYCQSLQTDDTGTRVLVNSTKNGDILSVRPVPKHLDKVWFTKKLRFPRQYLGITRMDDRCKKLSYMVHLLTRHGFQTRAILKSVYRLSLTWMFSRYEDMRKHVSSITRKIIVRNGPTRSPWVSRKDLPQYPYFYGEKRHENGIEAPLWSRSLPRKKGDVASETTQL
Ga0314764_1063713	Ga0314764_10637131	F030309	SGSPKGPILTQENPLRVKGEAKSKALSDGQRLSLRQFFKLEEGQVPADVWATLSNKERSAEMAKRSIPRWASEAVLRSANNLQLIIEGMLTKENANSAARVPKVAMTKSSSQAMEAWQQLKADFKGTSLFRNPVSGKEKAFKKRFDRLVSDYGQQPCFPKLRERPDQQGRSPSRGRGSSGQGGQFLEMAKAFGEIARAFSGKSN
Ga0314764_1064214	Ga0314764_10642141	F056211	DSQINNTLNVPNENMNTSITKSTTATGTGVSRGKGDVWHPYINDPSYGQRLLEVVSFLIILAAIPAFLGGVYSCFVMAYGAALGLLGMHAWTRRHALIFIISAAVFGVWLVVVIILNAVRDVSTVVPFYSDVVINSLRYSSGQFNGSRIFTYIDHGILIVLTAIAFFTAIKVAGERRPEPGTLVHQTTTSTTNVPQSV
Ga0314764_1064964	Ga0314764_10649641	F003289	NIVTEVSLQSNFNVGFSNMKSDVLIHLTQWQYXWXFXFTFLXAFYYLVILRVVRFRTLKFRPRLATTLRPHGKXGDVIICLIPVSXCANIITNSNFILRMIEXQAETGLLTIRIRGKQWYXIYKFELKTFTDILTVPKNVGRNKWQISTPGDMQIADDYLHIMQLRSQNKXVKKYXNDLSQKYSRSKNFHLISPQEQLQYNFYE
Ga0314764_1065948	Ga0314764_10659481	F010295	LGEVVSLLDGSEGSDFAFVVSEGSSDGSSLSVTEVGGVVLALDTFSDLFSVSLVDDSQVLSDGLSDNSNFAELGRGGTTSDLEGLKTLEFLLVLFESLDEFVVSDGSKLENSELLVGHLMRACECCAL
Ga0314764_1066572	Ga0314764_10665721	F098370	LDPDEQVALFLHQWATGREGGRKRDVFNPSVGFVRRTYSYRAVKPWSRLTFLGKLAALKVEPASKEEELRFLPADYVSLREDLVLKELAAFGSLVFNDE
Ga0314764_1067541	Ga0314764_10675411	F004023	HEVAXKSGVFTFLILQAVTFFGLVLCCTHLSEITLTIAANVINTFVLFTGKVYXXVFTDKNLNSDTLIRVAYAHYVSAFYMAYLSVLHGIDMHYDXKNETSYDGVEPEMIXXDEALANELGSFIDVIVLLNILCXVLYPEPEALSYELFMXGDVGIVTDVRFYGVAPHXYFRPFMAXLIVCPHHKTGIFGLALFFFALFH
Ga0314764_1068403	Ga0314764_10684031	F043180	MVSITQFAAPAASRSETIHFGSQEFPAIPRNGSWAPPPFQPSQTFQFGSLEFVTDQLGALCLHEDEAAPAAAEESVPPPKLHKLKRRWSIRWCIRKRKPSQPTRVMLRGIMLMMATNPAVEDVNLVLFSLANVSRQL
Ga0314764_1070143	Ga0314764_10701431	F009305	LSAFYMAYLGVLHGIDMHYDXKNEATYDGLESEMSXXDEALMNELGTFLEVVVLLNIFCWXIYPEPEALSYEIFMXGDIGMVSDVRYYGVAPHXYFRPYMAXLIVCPHHKTGIFGLVFLFFVLFHQPTLHGVNEHGPYFKKRLLFTTRKIKQKTFFKQAPLNVELNLYYQLTYGFFIICALYTNTFLPYGRFYNRLG
Ga0314764_1071673	Ga0314764_10716731	F009305	DXKNEATYDGLEAEMSWXDEALSNELGTFIEAIFVLNIVCWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAXLIVCPHHKTGIFGLIFLFFALFHQPTLHGVNEHGLYYKRRLLFTINRVKQKNFYKQSHLNLEMNLFFQTTYAFFIMCALYTNTFLPYGRFYNRLGGNVGMLGAYLYVFLYL
Ga0314764_1071680	Ga0314764_10716801	F055741	KVTTTYCPAVACRMSTSCVQIAPLLPEKKHTTASAMTQEQIAKANRVTLSLYGVQTVMDIEPHLVPFFGMMRTTCIGKSRNAKNYADHVSRCKIKANSLMTTSGVVIDAQQLSDIARFSYFIDFEDQYGSDKLMFDQTYVTTLVADPLYKRGSGAITTGTLSLLTDMLMAAADCKNVKMGLMKAARAGVQHANR
Ga0314764_1072121	Ga0314764_10721211	F056211	SRVNPPRPNVPTPNMNASITKSTTVTGTGVSRGKGDVWHPYINDPSYGQRLLEVVSYLIILAAVPAFLGGVYSCFVMAYGAALGLLGMHAWTRRHAMIFIISAAVFGVWLVVVIILNAVRDVSTVVPFYDDVVIQSLNPQRYSSGQFNGSRIFAYIDHGILIVLTAIAFFTAIKVAGERRPEPGTLVHQTTTS
Ga0314764_1075165	Ga0314764_10751651	F019067	LDLAEIHQLGRRTAQIAKEQGVSLSGVGHKVLGREVGDDRVDLSRTPDSLCATLVVQEDVIHMVTSPEDTSIRKRSWNFCEVTSGPITDPSQGYDHVRKNGDFSDLGFNDSVILRIILDVQKGEGEEHSSTQPGKMSMLGSRLATPRRENRGMWMLASLFQDSMLCTHKASEPKYLPSVMGGTGVTALFD
Ga0314764_1077234	Ga0314764_10772341	F102218	KHAISARPAAKVQELTNLFPVVPLPDGYGLSREEEVVVLRREVQRARDEERWTDLYSQRKKRKVQQREMLALPGERLPGRKIWKLLQQKKTTRLYTTLSCFAREWEQKRKEALLADPAPDDPPMIVSDLSGIDRLVDSIRYWKKTKEMVGVCAVEAPVQFDEDFVPLGADESSWKSNPVMGCDNVAS
Ga0314764_1078956	Ga0314764_10789562	F102612	PSPQVLQAYHQRLETLYHSLPDLLTEQEDKTGTEALEQDVGKLDVKEQNLEDRVNKYCQEFLYIGGPTPYKRDLTST
Ga0314764_1079455	Ga0314764_10794551	F040414	LRVSEAILDALFFTSVKIPRTLRAFAKSSLRPWFQGSRGKPVRVNHGQMQGAYLSFPLLCLHSYCAATWAARFDKEARFLVNGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTVFLKSKGRWREVRHLRRGGAVADYPGMLHMAKAVTITPGFVDAYQRCRIGRRWGFLPSQLGH
Ga0314764_1089899	Ga0314764_10898991	F033276	KIRAAITSLPDRVKRTKTGVISMATRPENYSLSRDEEHKAMRNEIERVREAGIEKGSERVPKYKPVVLPDARSFNSVRKQRRKNTAELMPSCYVRCFVEKIKNEGVLREVAPLELSLPPGDGSQVARMLDNIRAFKLTRNSSAYPGTIEATADFVSLCC
Ga0314764_1090983	Ga0314764_10909831	F003289	MXGNIVTEVSLQSNFNVGFSNQKSDVLIHLTQXQYXXWFWFTFLWAFYYLVILRVVRFRTLKFRPRLATSLRPHGKXGDVIICIIPISXCANIITNSNFILRMIEWQAETGLLTIRIRGKQXYXIYKFELKTFTDILTVPKNVGRNRXQISTPGDMQVSDDYLHILQL
Ga0314764_1091412	Ga0314764_10914121	F003289	GFSNNKSDVLIHLAQWQYXXXFXFTXLXSFYYLTILRVVRFRTLKFKPKIATTQRPHGKXGDLLICIIPVSXCSNILSNSTFILRMIEXQAEAGLFTVRIRGKQXYXIYKFELKSFTDILTVPKNVGRNKWSIYTPGDLQTANDYLHVLQLRSQNKXVKKYXNKYLVETGKS
Ga0314764_1094254	Ga0314764_10942542	F052990	MQAKGLQVNEEDEYLEKIDFETQDLKQKVTERLEDVNRMDCYLYYVFGKIYEKIDDDIDAAIDWYQKGTDIDTDSCLKNHLLCNEAWRLKCKKRLIKLQTRKGLQVFIFNKNRED
Ga0314764_1097245	Ga0314764_10972451	F007513	VVTVLQQVVALPAVLLVVFIKAMDHETEALEEVLRLHAFLAVVIVSLAVDGIGDTLCLTLLTLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033540: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences