NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033446

3300033446: Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.202



Overview

Basic Information
IMG/M Taxon OID3300033446 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0344147 | Ga0316611
Sample NameMicrobial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.202
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size314944902
Sequencing Scaffolds14
Novel Protein Genes17
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electronema → unclassified Candidatus Electronema → Candidatus Electronema sp. GS1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon llansteffanensis1
Not Available1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → sinkhole → microbial mat material
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)45.1993Long. (o)-83.3279Alt. (m)N/ADepth (m)185
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002525Metagenome / Metatranscriptome552Y
F044511Metagenome / Metatranscriptome154Y
F079740Metagenome / Metatranscriptome115Y
F084884Metagenome / Metatranscriptome112Y
F095378Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0316611_1008386All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electronema → unclassified Candidatus Electronema → Candidatus Electronema sp. GS3266Open in IMG/M
Ga0316611_1013526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2517Open in IMG/M
Ga0316611_1020407All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1987Open in IMG/M
Ga0316611_1026943All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon llansteffanensis1688Open in IMG/M
Ga0316611_1033778Not Available1473Open in IMG/M
Ga0316611_1033823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1471Open in IMG/M
Ga0316611_1057536All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1042Open in IMG/M
Ga0316611_1059832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1015Open in IMG/M
Ga0316611_1062399All Organisms → cellular organisms → Bacteria987Open in IMG/M
Ga0316611_1063187All Organisms → cellular organisms → Bacteria978Open in IMG/M
Ga0316611_1067314All Organisms → cellular organisms → Bacteria936Open in IMG/M
Ga0316611_1085373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi792Open in IMG/M
Ga0316611_1086586All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium784Open in IMG/M
Ga0316611_1111554All Organisms → cellular organisms → Bacteria655Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0316611_1008386Ga0316611_10083863F002525VWAGVDSVWEQEKLEARKMLENAAESHTSGARFVRRG
Ga0316611_1013526Ga0316611_10135261F044511SGQQAGCLTKRAPDAGDSGAIPSLFLRLSIFPIGRRSAARPSAGNANR
Ga0316611_1020407Ga0316611_10204071F084884PTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVGTPLAKLVKSKRD
Ga0316611_1026445Ga0316611_10264454F079740MRTQVISFPNKQTLCVFPDKPSDLEQAISELKLDGNSPVIVLIGGVIDKQQAEATRQ
Ga0316611_1026943Ga0316611_10269432F044511KHKRQPTKRAPDAGDSAAFSSLFLRLSLFPVGRRSAAHPSAGNANR
Ga0316611_1033778Ga0316611_10337783F095378MKAILIDELVKYQSTTEQVSVTIEGKKLEGWEIAKPLNYEKKYTRFTDRLKSSIKVLTGKAIAVQFFTDLTEQDKIAYVKTKLN
Ga0316611_1033823Ga0316611_10338233F044511KRAPDAGDSGAIPSIFLRLSIFPVGRRSAARPSAGNANR
Ga0316611_1057536Ga0316611_10575363F002525VWAGVDNVWEQENAEARKMLENAAESHTSGARFVG
Ga0316611_1059832Ga0316611_10598321F002525NVWKREKLEARKLLENRAESPASGARFVRRGFIHQVLVR
Ga0316611_1062399Ga0316611_10623992F084884TLGILARFQAFFYALSFSQSDGVPPPAPARVTQTVVPLL
Ga0316611_1063187Ga0316611_10631873F084884VHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQAVGHFLAE
Ga0316611_1067314Ga0316611_10673143F084884LGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLAQPK
Ga0316611_1067810Ga0316611_10678102F079740MRTQKIYFPDQQEVLCVFPNKRSNLEQAISELRLGGNY
Ga0316611_1085373Ga0316611_10853731F084884LGILARFQAFFYALSFSQSDGVPPPDPARVTQTVGQFLAKHH
Ga0316611_1086586Ga0316611_10865861F084884GILARFQAFFYASAFFQSDGVPPPAPARVTQTVSP
Ga0316611_1111554Ga0316611_11115542F084884VHPTLGILARFQAFFYASTFSQSDGVPPPTPARVTQTVRQIFGEIDL
Ga0316611_1158904Ga0316611_11589041F079740MRTKKISFPGQQSLCVFPNNRSELAQAISELHLNGNSPVIVLIGGEIDEKEAEATHRA
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