NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033163

3300033163: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_8_08-R3



Overview

Basic Information
IMG/M Taxon OID3300033163 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136119 | Gp0356215 | Ga0334899
Sample NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_8_08-R3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size330707143
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1661
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
Not Available4
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin2761
All Organisms → cellular organisms → Bacteria → Atribacterota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F028538Metagenome / Metatranscriptome191Y
F055545Metagenome138Y
F059653Metagenome / Metatranscriptome133Y
F059692Metagenome / Metatranscriptome133N
F065263Metagenome128Y
F066219Metagenome / Metatranscriptome127Y
F070092Metagenome123N
F082560Metagenome113N
F089495Metagenome / Metatranscriptome109N
F093482Metagenome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334899_1004096All Organisms → cellular organisms → Bacteria9587Open in IMG/M
Ga0334899_1008344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae5255Open in IMG/M
Ga0334899_1009005All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4923Open in IMG/M
Ga0334899_1012705All Organisms → cellular organisms → Bacteria3649Open in IMG/M
Ga0334899_1018957All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae2569Open in IMG/M
Ga0334899_1019381All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA1662517Open in IMG/M
Ga0334899_1020832All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2362Open in IMG/M
Ga0334899_1027143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1854Open in IMG/M
Ga0334899_1028127All Organisms → cellular organisms → Bacteria1790Open in IMG/M
Ga0334899_1034557All Organisms → cellular organisms → Bacteria1481Open in IMG/M
Ga0334899_1048874All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1077Open in IMG/M
Ga0334899_1049008Not Available1075Open in IMG/M
Ga0334899_1050505All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin2761046Open in IMG/M
Ga0334899_1061462Not Available876Open in IMG/M
Ga0334899_1089144Not Available628Open in IMG/M
Ga0334899_1099714All Organisms → cellular organisms → Bacteria → Atribacterota570Open in IMG/M
Ga0334899_1101137Not Available563Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334899_1004096Ga0334899_100409625F066219MKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSKVFDWNSKRLLTISPIGE
Ga0334899_1008344Ga0334899_10083448F055545SFKLSTLGGAKIKADVGASHAPNIAHQTDVGNLMSGGEH
Ga0334899_1009005Ga0334899_10090052F065263MEAAIFGKLIISSLVMIIAGWLFQDQADRYSGKIARFFQRALTVLLMLSMIVCAGSVIAVIWINN
Ga0334899_1012705Ga0334899_10127054F022008MTVSEIETLREALMDLSKQVQALSEDSRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334899_1018957Ga0334899_10189574F070092LMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFTDMLKFLDGTNNAVYISETLKYKGG
Ga0334899_1019381Ga0334899_10193811F028538LDLKRRIERCEEVRRQCIAQAQAEGVTKQGSFRLKFRTRKTRTVIPERFFARFGAETFVRCCTVAIGKAEALLGKAALDDCCEVEVKDLGATVEYVRPEGSE
Ga0334899_1020832Ga0334899_10208325F065263MEAEFYGKLIISSLAVIIAGWLFQDQADRFVGRFAKFIQDSLTVILIIAGLVCTVSVIAVIWINN
Ga0334899_1027143Ga0334899_10271434F082560MYAVFRCAGIPVDGGIGVTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIDADTWVVEAKVPNAKPRVPKSVRVGYPEEMQEWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYLSFKIGGEYYGRIGNA
Ga0334899_1028127Ga0334899_10281272F082560MYAVFWRAGIPVDGGIGVTEKSIVKKIQEWFKSKGGVCHKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKSVRAGYPEEMQEWMEQGATVLQAKTLYDWQLAGAVALVATSVEDMERMFEKEYFGYKIGGKYYGRIGNA
Ga0334899_1034557Ga0334899_10345572F059653LTNLEALQSQTEYSNDNLLEKILLDNGLTASATYAAGNSKDIDLCAASLYFTLAAHPEFRDGSTSIKYNAVQLIAMARAILQKYGLDEPTVDGA
Ga0334899_1048874Ga0334899_10488741F022008MTVNEIEVLQEALTELSKQVKSLSDDNRASFGRIYDRLTKIETQMSERECQFKKFERALDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGG
Ga0334899_1049008Ga0334899_10490083F089495MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKA
Ga0334899_1050505Ga0334899_10505053F059692MDKETEQLILKKLQIDYLSLHAVLTDLEKIISALVVDLDPRVNEIQRIQDQIKGYLSEP
Ga0334899_1061462Ga0334899_10614623F065263MQNQHCSKKMEAALYAKLIISSLVMIIAGWLFQDQADRYSGKIARFFQKALTIVVILAMIVCAGSVIAVIWINN
Ga0334899_1089144Ga0334899_10891442F082560VTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKFVRAGYPEEMQKWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYFGYKIGGKYYGRIGNA
Ga0334899_1099714Ga0334899_10997141F093482LYSGGLGRAFFVLRRFLMEERTLDSLWEKIEKENPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334899_1101137Ga0334899_11011371F089495ITGYADVPELPEPVVDAPAEGYSPQGVFNSIEEGDDTITLPEFSITLDINDADVASGKYALDQWFNNHKESSGATALVSTNDGSAYLKKAIDGTTVSANLATDWFTIGMKVIFDTGGTGKAFGKNYKYVRPISASFSTSNKAQVTLRAQIVGAPTDITSSS
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