Sample 3300032843

Overview

Basic Information
IMG/M Taxon OID	3300032843 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128851 \| Gp0330590 \| Ga0314736
Sample Name	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	78182579
Sequencing Scaffolds	36
Novel Protein Genes	42
Associated Families	37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	4
Not Available	14
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 88	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.3951	Long. (^o)	-85.3736	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000412	Metagenome / Metatranscriptome	1169	Y
F000459	Metagenome / Metatranscriptome	1109	Y
F001705	Metagenome / Metatranscriptome	648	Y
F004023	Metagenome / Metatranscriptome	456	Y
F007513	Metagenome / Metatranscriptome	349	Y
F015691	Metagenome / Metatranscriptome	252	Y
F016911	Metagenome / Metatranscriptome	243	Y
F020839	Metagenome / Metatranscriptome	221	Y
F023769	Metagenome / Metatranscriptome	208	Y
F024696	Metagenome / Metatranscriptome	204	Y
F026180	Metagenome / Metatranscriptome	198	Y
F029306	Metagenome / Metatranscriptome	188	Y
F030953	Metatranscriptome	183	N
F032131	Metagenome / Metatranscriptome	180	Y
F034039	Metagenome / Metatranscriptome	175	Y
F038063	Metagenome / Metatranscriptome	166	Y
F040444	Metagenome / Metatranscriptome	161	Y
F040454	Metagenome / Metatranscriptome	161	N
F042666	Metatranscriptome	157	N
F047420	Metagenome / Metatranscriptome	149	Y
F049431	Metagenome / Metatranscriptome	146	N
F055345	Metagenome / Metatranscriptome	138	Y
F062397	Metagenome / Metatranscriptome	130	Y
F068385	Metagenome / Metatranscriptome	124	Y
F069563	Metagenome / Metatranscriptome	123	N
F070702	Metatranscriptome	122	N
F076802	Metagenome / Metatranscriptome	117	N
F078016	Metatranscriptome	116	N
F088051	Metagenome / Metatranscriptome	109	Y
F088054	Metagenome / Metatranscriptome	109	N
F089752	Metagenome / Metatranscriptome	108	N
F093055	Metagenome / Metatranscriptome	106	Y
F094644	Metagenome / Metatranscriptome	105	N
F094708	Metagenome / Metatranscriptome	105	Y
F096516	Metagenome / Metatranscriptome	104	Y
F104115	Metatranscriptome	100	N
F106076	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0314736_1002753	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	1816	Open in IMG/M
Ga0314736_1007588	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1299	Open in IMG/M
Ga0314736_1008580	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1242	Open in IMG/M
Ga0314736_1012223	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1074	Open in IMG/M
Ga0314736_1013182	Not Available	1040	Open in IMG/M
Ga0314736_1014071	Not Available	1012	Open in IMG/M
Ga0314736_1014293	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1005	Open in IMG/M
Ga0314736_1014392	Not Available	1002	Open in IMG/M
Ga0314736_1016231	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	950	Open in IMG/M
Ga0314736_1016291	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	949	Open in IMG/M
Ga0314736_1016944	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	932	Open in IMG/M
Ga0314736_1019967	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	865	Open in IMG/M
Ga0314736_1020692	Not Available	850	Open in IMG/M
Ga0314736_1020832	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 88	848	Open in IMG/M
Ga0314736_1020999	Not Available	845	Open in IMG/M
Ga0314736_1021069	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	844	Open in IMG/M
Ga0314736_1021443	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	837	Open in IMG/M
Ga0314736_1025206	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	774	Open in IMG/M
Ga0314736_1029685	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	711	Open in IMG/M
Ga0314736_1029796	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	710	Open in IMG/M
Ga0314736_1031677	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	687	Open in IMG/M
Ga0314736_1037148	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	631	Open in IMG/M
Ga0314736_1037220	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	630	Open in IMG/M
Ga0314736_1041441	Not Available	594	Open in IMG/M
Ga0314736_1041578	Not Available	593	Open in IMG/M
Ga0314736_1041630	Not Available	593	Open in IMG/M
Ga0314736_1041739	Not Available	592	Open in IMG/M
Ga0314736_1044217	Not Available	574	Open in IMG/M
Ga0314736_1044885	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	568	Open in IMG/M
Ga0314736_1045341	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	565	Open in IMG/M
Ga0314736_1045634	Not Available	563	Open in IMG/M
Ga0314736_1048536	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	544	Open in IMG/M
Ga0314736_1049526	Not Available	538	Open in IMG/M
Ga0314736_1050690	Not Available	531	Open in IMG/M
Ga0314736_1054709	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	508	Open in IMG/M
Ga0314736_1055940	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314736_1002753	Ga0314736_10027533	F076802	MPDPSFGAQFFDLPQPEQGMRIMGAYARRNIEDIDAIRRHTSQLKDGTAGIAYQMRLLGLAPPEQFDGCAFQQYYDQGYNARGNQE
Ga0314736_1003498	Ga0314736_10034981	F030953	ELSGRYKEIRSAGKSRPMLIFDEQIELLAPLHKTIFSHLSKQEWSLCGPPTEEKVSSVCVNARQTSVDLVAASDGLDLRVSEAILDALFFTSVKIPRTLRAFAKSSLRPWFKGSRGEAVRVNHGQMQGAYLSFPLLCLHSYCAATWAARFDREARFLVNGDDTVISANRDILVQDYPSGYRLNMDKTIRAGNTAEVNSTVFLWSKGKWREVRHLRRGGAVTDYPGMLHMAKAVTVSPRFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPSDGCVFPEEMVRITGRDPTPVEQEALRAVQWRHGRWGGSKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGKTKLSPLWEKGADWGLVPADFRSEEEERGLAKLEQFRADWDSGFIAIGD
Ga0314736_1004365	Ga0314736_10043651	F094644	MKFIFLLXALRYQRYHSGIWHHCYCCSMPTKCSLHSGYCHTCASHLLCNSNTWILQIXGKDIHLPFASPSSGFQQRMXYCQNHKXLFTHSFIKDLRSMAIYIRMDALECGYHFPSENDQVXQISHFNKSVIVQIHEHRNAKSNIWLNYTSNSLETSEFFGIFXSSLQQATLEKVHISIGNNISLNSYYHMWYVILYKNIMYLRHDIHILLPCLYMGFNQMEMKHV
Ga0314736_1007588	Ga0314736_10075884	F001705	GRGRPKLTRDELVKRDLKDWNISKEIALDRSAWRLAINVPEP
Ga0314736_1008580	Ga0314736_10085802	F069563	LRGAGLMGDEERGVLEIGEVEEGTTHLARSMATEAGPVGVEAGSHLLVGVDCAEGSLRGLEVYGSVPPGGGSGMSRLHHRH
Ga0314736_1008631	Ga0314736_10086312	F030953	EARFLVNGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTVFLKSKERWREVRHLRRGGAVTDFPGMMHMAKAVTVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRIIGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGRPKLSPLWEKGADWGLVPASFQTEEEERGLAELEQFRRNWDSGFISVGD
Ga0314736_1012223	Ga0314736_10122233	F007513	VEDRETVVVTVLQRVVALPAVLLVVFSTAMDHGTEVLEEVSRHHAFLAVVFVSHAVDGMGDTLCLVLLTLL
Ga0314736_1013182	Ga0314736_10131821	F020839	ALAAAQTGRKTAAPGTGTGAPQMDQRLLTITWPKTRHNINIHANNSKN
Ga0314736_1014071	Ga0314736_10140711	F104115	WAMRGHKATYLVNGDDCLVSSDAYVSAESYPSGWRLNDKKTIRSEVVAEVNSTAFLSGGGKWREVRHLRRGGFQTDFKGMLHIASAVRGSREWTDAFVHSRIGKKWGFLPSQLSLHPKSYPAFSRGREMWHRCHTPLPLAPSQDRGEGVLGLRRALDPDERMAFTAWQWSHGRDGGRKRDVYSPSVGEVRRTYAYKVVKPWSRLSFVSKLKSLKFDGYAYGRKEVDMQFVPDEYMSIREMRAIREQNFCFPQVDG
Ga0314736_1014293	Ga0314736_10142931	F094708	PRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTTGKKTNSTSVT
Ga0314736_1014392	Ga0314736_10143921	F089752	LTCLVKVVHPLGVPERGPGRCVNTSVGIVHPWGVYFEARASLFVCLKDKTCLRAEGGQGDDGACCSAAGAFVVLSRASGHRPWLPWLLCGAPFEGGRPEPMLRRSASRGSAPLYFVRSRLGVVTEGIFCPWSAVSSRATQASAFRPAWSLVPGTAINRGRGVSPSSPAS
Ga0314736_1016231	Ga0314736_10162312	F088051	MGNNFQKSQIDLAMVNIDLAIIMPAPEEPENLVMAQNEADNAWTIRGKAYDIA
Ga0314736_1016291	Ga0314736_10162911	F015691	MQFYKTGHWVVFIKLGQKHASKFGIELAVFVAFGEVLPFGLGVAEWVLVLLLTVLLVDGLSFVHSVVYNAHKQASNQNTENRSLSLSSDREHIKYGARSNIFEWFANGMAQNYIRNGMVKFGVDRSCFGA
Ga0314736_1016944	Ga0314736_10169441	F042666	LKETLLTWSMPCADLHKNAFQRSSSRVAHVTRPVNNSTSGLTVKRCHDCSKSERDTKETIHNGLLLLRVGYGLPYSELPDCSPGDLSRFLSFLLLQGKERTSVAFPRRQRHGENGLCTLQRLCRRDRWALAHGCSSIKRNLPKGCFRHTPSVFAAWEAAALSQPPPLTSGYIEHVRRVVTGIFRPGWDKNYRSFVGSHVPNPSARACMTRADVLWRRRRDEFFTATTSESEINPSELSGRYKEIRSAGKSRPMLIFDEQIELLAPLHKTIFSHLSKQEWSLCGPPTEEKVSSVCVNARQTSVDLVAASDG
Ga0314736_1019967	Ga0314736_10199672	F047420	VNIAEKDLADLAFNGLRSHIKKRLEGYDFFTVTQVHQRALAVESRSKEPQESHRHHRSSVHTLECNSDCSDDESKDVYAAEFVWSSQAKSFTCSALKPIHKNR
Ga0314736_1020692	Ga0314736_10206921	F024696	CIALSPLGGIYRSTWFGGQVASPRDKEGYPGITINPKLTISGVA
Ga0314736_1020832	Ga0314736_10208321	F078016	CVVGSGVFREKVQTFLLRNITSGIFSTQRSLRRGLGCTLSNRVIRWAQMSDREDFYLSLSSEPAVPLRKRLWMHNSIPDGYVRCVGVDDDESFSSNMIETAWSRPPIHGGKQTDDEYWDYVRQGTYRYSPFSARRFWSIAGGVGDLPRPTLQCRRPEKMGWKKQREGGIAFVSAGFQ
Ga0314736_1020999	Ga0314736_10209991	F104115	WAMRGHKATYLVNGDDCLVSSDAYVSAESYPSGWKLNDKKTIRSEVVAEVNSTAFLSGGGKWREVRHLRRGGFQTDFKGMLHIASAVRGSREWTDAFVHSRIGKKWGFLPSQLSLHPKSYPAFSRGREMWHRCHTPLPLAPSQDRNEGILGLRRALDPDERMAFTAWQWSHGRDGGRKRDVYSPSVGEVRRTYAYKVVKPWSRLSFVSKLKSLKFDGYAYGRKEVDMQFVPDEYMSIREMRAIREQNFCFPQVDG
Ga0314736_1021069	Ga0314736_10210692	F001705	GRPKLTWDESVKRDLKDWNISKEIALDRSVWRLTINVPEP
Ga0314736_1021443	Ga0314736_10214431	F096516	MKEDSKSPTQAGMLTEIEYVVNLKILIEEVRLDQDMKAQVFCMSFYVNLSIGCRTIKRDATSVV
Ga0314736_1025206	Ga0314736_10252061	F088054	PFQQLHRYKIWQSILLATATLASSFQLAIVTTSFSFPWSIAIVVDGDDVVVVGAGEAADMGHTVATGQTPT
Ga0314736_1029685	Ga0314736_10296852	F026180	SVHPTARHSAADCREIQKLAKRVSGRHEQSSKDGSPPPRQRPGKEKAFDSGAAVGEKELGYQSPARELKGVYQGDNSDSDDGDRRKKLYVKYGGSWELVSRSDVKTLRREVLSVKPGVPKAAPHQRWMNTTISFGPSDCQRIWLGPVYYL
Ga0314736_1029796	Ga0314736_10297961	F042666	TSGSTVKRCFECSQSERFTKETIHNGMQLLRVRYGLPYAELPDCTSMELSRFLSFLLLQGKERTSVVFPRQQKKIQKNTTNCEEKIGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCKRHTPSARKAWEANACSQPPPPSSGYLQHVRRVVTDSFRPGWDKNYHSFVGNHVPNPSSRACKGRADALWAGRRSEFITATTSEMEVTPPELTGRYKDILSAGKTRPMLIFDESVELLA
Ga0314736_1031677	Ga0314736_10316771	F049431	TTGRINQVTILSPSAEAREQTPRRRPGCTGRKGRRRSEPQPQASEVCETPKPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETSRTSVPSTSTLQLPEGGQHRASRKESPSPK
Ga0314736_1034490	Ga0314736_10344901	F093055	VGIVLAGKHRDLTMTRHGRQIIFEPVRVMKTLTNF
Ga0314736_1037148	Ga0314736_10371482	F034039	MYLLFRGTVLDREVQCLKVLGLRLWDYAVVVPDGVQVVANTTLDSVVAFSLTVLADHVFPLVVIAFLKWDWACLVFFLTLFQGI
Ga0314736_1037220	Ga0314736_10372201	F062397	MNGILVVMAFGPLFGLWPSSFFVLLSDHGPRHFMLQNWSKTCKNEVPPKYMC
Ga0314736_1041303	Ga0314736_10413031	F000459	VRSGVLERVDNVKMGRGRPKLTWDESVKRDLKDWNISKEIALDRSAWRLAIIVPEP
Ga0314736_1041441	Ga0314736_10414411	F032131	MLAIEDFSSKAVNATQPLVERYLEDILCPVDIYNPHPSSEVHQNTDAGISESPDSCLRKS
Ga0314736_1041578	Ga0314736_10415781	F040454	MHLLHPPMLERLLVLKQXSDDNLMEXVHETFINSQDSTLEFKGASPRERLKPTEEEKGQAGRPRGVGPADQLPVGLHFFGFFFCELFDASQAYVLLNFALDSTVFPSK
Ga0314736_1041630	Ga0314736_10416301	F000412	AHPCRAIDRAXEPRIPSPCSLKAITHATGSKIGSSRTLSNRGTKYYPVGMKTHIEYPDIFFXKYNSPYHIEMGTYVLIDLLXAGGSVAPAQPTSLQWNXXIFAQTCSTCLEGPYRKDSSGAQPCRAIDRAXEPRIPSPCSFKAITHATRSKIGSSRSRWNRGIEYYPIGMKLI
Ga0314736_1041739	Ga0314736_10417391	F106076	TNPYKVPLLFPXIKEWCAQVTVIPDDKSNTVLSKGNSKGFIASIPIGGHXAPNSTVGDKALXKNAQNIAKKNKASVTINKATPIFNPLXTAAVXLPRYVPSEITSRHQNDIDNTTEINANKTKTLELLKPCIVNTPLVVKVNKEIQVYNGQGDGETKXKGWCXNILLLKASKFILFIILR
Ga0314736_1042801	Ga0314736_10428011	F070702	EARFLVNGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTVFLKSKGRWREVRHLRRGGAVADYPGMLHMAKAVTITPGFVDAYQRCRIGRRWGFLPSQLGHKTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRITGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARP
Ga0314736_1044217	Ga0314736_10442172	F055345	MRPEAKAQIYSVNENLPANQVAXMXGVLDQLERTRGKEKDGEAA
Ga0314736_1044885	Ga0314736_10448852	F040444	TRHMQLNTSREEEGTRGVIKLTAIVALDGLNGEAELGGHPGKEVEGGGKRLRLSAQRKSPRKVRKIIDHHQIVLIARNTEYRRGPQVTVNKIKSMSCMRKSKKRKSNMTT
Ga0314736_1045341	Ga0314736_10453412	F016911	AIAHYGYLVLKMPSPAGVLTVRGDRTAAVAAVERLHALAVEAARSEEDPSTSQPRAPAKAPRVQPSDPDDVPVKTVQIGADSSRTTRIAGNLEEK
Ga0314736_1045634	Ga0314736_10456341	F024696	IYRSTWLGGQVASPRENEGYSGITINPKLTISGVA
Ga0314736_1048536	Ga0314736_10485361	F004023	FYWXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNESSYDGLEVEMSXXDEALSNELGSFIELIFILNLICWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPYMAXLIVCPHHKTGIFGLLYLFLVLFHQPTLHGINEHNLYYKRRLLFSVNKIKQKVFF
Ga0314736_1049526	Ga0314736_10495261	F068385	MIRLVSYEIXNETPQFETIMRAKDLISKIKDLSSLKCHK
Ga0314736_1050690	Ga0314736_10506901	F038063	RTEAFLMASNASYLDVRSMIFSRSIMLLLFTIYEYHVFSMRSCFDLKLILVAKD
Ga0314736_1054709	Ga0314736_10547091	F023769	TSGSTVKRCRDCLRGERDTKETIHNGLLLLRVRYGLPYAELPDCGPGDLSRFLSFLLLQGKERTSVAFPRRQRPGENGLCTMQRLCRRDRWALAHGCSSIKRNLPKGCFRHTPSVFAAWEAAALSQPPPLTPGYLEHVRRVVTGIFRPGWDRNYNSFVGSHVPNPSAR
Ga0314736_1055940	Ga0314736_10559401	F029306	MQTKLNKSKTITIETKLENKANKTGFTIFSLSSKKFYIKPPFGQQARNRNKTLTTSKQTCERVIPLKTTLHKESNKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300032843: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences