Sample 3300032790

3300032790: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300032790 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128851 \| Gp0330585 \| Ga0314731
Sample Name	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	116533884
Sequencing Scaffolds	55
Novel Protein Genes	73
Associated Families	54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria italica	1
Not Available	31
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	8
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	3
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.3956	Long. (^o)	-85.3757	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000459	Metagenome / Metatranscriptome	1109	Y
F000927	Metagenome / Metatranscriptome	831	Y
F001543	Metagenome / Metatranscriptome	673	Y
F001705	Metagenome / Metatranscriptome	648	Y
F002654	Metagenome / Metatranscriptome	539	Y
F007513	Metagenome / Metatranscriptome	349	Y
F010664	Metagenome / Metatranscriptome	300	Y
F014470	Metatranscriptome	262	Y
F018302	Metagenome / Metatranscriptome	235	Y
F023044	Metagenome / Metatranscriptome	211	Y
F026180	Metagenome / Metatranscriptome	198	Y
F026779	Metagenome / Metatranscriptome	196	Y
F027091	Metagenome / Metatranscriptome	195	Y
F028072	Metagenome / Metatranscriptome	192	N
F030315	Metagenome / Metatranscriptome	185	Y
F031344	Metagenome / Metatranscriptome	182	N
F032131	Metagenome / Metatranscriptome	180	Y
F040443	Metagenome / Metatranscriptome	161	Y
F040444	Metagenome / Metatranscriptome	161	Y
F040454	Metagenome / Metatranscriptome	161	N
F041531	Metatranscriptome	159	Y
F046814	Metagenome / Metatranscriptome	150	N
F050083	Metagenome / Metatranscriptome	145	Y
F052301	Metagenome / Metatranscriptome	142	N
F055345	Metagenome / Metatranscriptome	138	Y
F055385	Metagenome / Metatranscriptome	138	Y
F061504	Metagenome / Metatranscriptome	131	N
F065367	Metagenome / Metatranscriptome	127	N
F067332	Metagenome / Metatranscriptome	125	N
F069562	Metagenome / Metatranscriptome	123	Y
F069563	Metagenome / Metatranscriptome	123	N
F070702	Metatranscriptome	122	N
F070783	Metagenome / Metatranscriptome	122	Y
F074256	Metagenome / Metatranscriptome	119	Y
F076725	Metagenome / Metatranscriptome	117	Y
F079533	Metagenome / Metatranscriptome	115	N
F082000	Metagenome / Metatranscriptome	113	Y
F085070	Metagenome / Metatranscriptome	111	Y
F086473	Metagenome / Metatranscriptome	110	N
F086518	Metagenome / Metatranscriptome	110	Y
F091151	Metagenome / Metatranscriptome	107	Y
F093512	Metagenome / Metatranscriptome	106	N
F094644	Metagenome / Metatranscriptome	105	N
F094708	Metagenome / Metatranscriptome	105	Y
F096451	Metagenome / Metatranscriptome	104	Y
F100267	Metagenome / Metatranscriptome	102	N
F100268	Metagenome / Metatranscriptome	102	Y
F102218	Metatranscriptome	101	N
F102251	Metagenome / Metatranscriptome	101	Y
F102612	Metagenome / Metatranscriptome	101	N
F104115	Metatranscriptome	100	N
F104214	Metagenome / Metatranscriptome	100	Y
F104217	Metagenome / Metatranscriptome	100	Y
F104270	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0314731_1001769	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	2407	Open in IMG/M
Ga0314731_1002698	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria italica	2141	Open in IMG/M
Ga0314731_1007903	Not Available	1537	Open in IMG/M
Ga0314731_1008475	Not Available	1505	Open in IMG/M
Ga0314731_1008538	Not Available	1502	Open in IMG/M
Ga0314731_1013561	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1274	Open in IMG/M
Ga0314731_1015177	Not Available	1220	Open in IMG/M
Ga0314731_1015945	Not Available	1195	Open in IMG/M
Ga0314731_1017373	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	1155	Open in IMG/M
Ga0314731_1018420	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1128	Open in IMG/M
Ga0314731_1021380	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1060	Open in IMG/M
Ga0314731_1022834	Not Available	1030	Open in IMG/M
Ga0314731_1024570	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	998	Open in IMG/M
Ga0314731_1025473	Not Available	982	Open in IMG/M
Ga0314731_1025655	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	979	Open in IMG/M
Ga0314731_1029660	Not Available	915	Open in IMG/M
Ga0314731_1029840	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	912	Open in IMG/M
Ga0314731_1030039	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	909	Open in IMG/M
Ga0314731_1031508	Not Available	887	Open in IMG/M
Ga0314731_1033964	Not Available	854	Open in IMG/M
Ga0314731_1035411	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	836	Open in IMG/M
Ga0314731_1035608	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	834	Open in IMG/M
Ga0314731_1036736	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	821	Open in IMG/M
Ga0314731_1038673	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	800	Open in IMG/M
Ga0314731_1040525	Not Available	780	Open in IMG/M
Ga0314731_1045585	Not Available	733	Open in IMG/M
Ga0314731_1045924	Not Available	730	Open in IMG/M
Ga0314731_1047122	Not Available	720	Open in IMG/M
Ga0314731_1051626	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	684	Open in IMG/M
Ga0314731_1052823	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	675	Open in IMG/M
Ga0314731_1053341	Not Available	671	Open in IMG/M
Ga0314731_1053532	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	670	Open in IMG/M
Ga0314731_1053640	Not Available	669	Open in IMG/M
Ga0314731_1056412	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	650	Open in IMG/M
Ga0314731_1057446	Not Available	644	Open in IMG/M
Ga0314731_1058878	All Organisms → cellular organisms → Eukaryota	635	Open in IMG/M
Ga0314731_1061911	Not Available	617	Open in IMG/M
Ga0314731_1062395	Not Available	614	Open in IMG/M
Ga0314731_1063451	Not Available	608	Open in IMG/M
Ga0314731_1065781	Not Available	595	Open in IMG/M
Ga0314731_1069602	Not Available	575	Open in IMG/M
Ga0314731_1070264	Not Available	572	Open in IMG/M
Ga0314731_1071801	Not Available	564	Open in IMG/M
Ga0314731_1072361	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	562	Open in IMG/M
Ga0314731_1072732	Not Available	560	Open in IMG/M
Ga0314731_1072797	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	560	Open in IMG/M
Ga0314731_1074601	Not Available	551	Open in IMG/M
Ga0314731_1078464	Not Available	534	Open in IMG/M
Ga0314731_1080211	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	527	Open in IMG/M
Ga0314731_1080337	Not Available	527	Open in IMG/M
Ga0314731_1080780	All Organisms → cellular organisms → Eukaryota	525	Open in IMG/M
Ga0314731_1081374	Not Available	522	Open in IMG/M
Ga0314731_1081734	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria	521	Open in IMG/M
Ga0314731_1085280	Not Available	507	Open in IMG/M
Ga0314731_1085569	Not Available	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314731_1000789	Ga0314731_10007895	F000459	VLERVDNVMRGRGRPKLTWDESVKRDLKDWNISKEIALDRSAWRLAINVPEP
Ga0314731_1001769	Ga0314731_10017694	F010664	MIILQIGDNHNNENHEALPQQPPSLAQAVAALIADRNEQTELIRQLVQAQANVGRGRHAPPPPAETDYVGFLTT
Ga0314731_1002082	Ga0314731_10020821	F094644	MKFIFLLXALRYQRYHSGIWHHCYCCSMPTKCSLHSGYCHTCALRLLCNSNTWILQIXGKDIHLPFSSPSSGFQQRMXCCQNHKXLFTLSFIKDLRSMAIYIRTDALECGYHFPSENDQVXQISHFNKSVIVQIHKHRNAKSNIWLNYTSNSLETSEFFGIFXSSLQQATLEKVHISIGNNISLNSYYHMWYVVHYKNSMYLRHDIHILLPCLYMGFNQMEIKHV
Ga0314731_1002698	Ga0314731_10026981	F028072	LNLEVNTGKTVSTKENINIRCRINSSEEHTWHTSHGQINLIVDLIHNFYITWGKRQDDLELKFERLQKEHKHLEEQYLVANKKLELALQAFEERKIFLGKISQNSDYIKRDISYLFNKLESTNIAEHSKEIVLSSSGILEVTRSLNSDKWKYLTASLEETSVSK
Ga0314731_1007899	Ga0314731_10078991	F104217	KKTNRSASKSPDDIGVKAIQLQEYDPSKTALIGTRLSDK
Ga0314731_1007903	Ga0314731_10079031	F104270	MRWCKEHKDLDRFGPSERNTLRHMWWFVFPLDLFDILEGSL
Ga0314731_1008475	Ga0314731_10084751	F001543	MSIGCVYKNWDKHASNDEIELVVFKAFREVQIEVLSFRFGVAELVLVRLLAVLLVDGFSLVHTVIYDAHKQAHNQEKE
Ga0314731_1008538	Ga0314731_10085384	F046814	FPVLLPFFIPKLCFIQLMRRNRTYPHNWVVVKEEDNKQDNLGFGFWNPVDLMSCSNEEFSLPNIDGASNSEMKNTDMIIARN
Ga0314731_1013561	Ga0314731_10135613	F027091	APVFDVYPDLAESPQDSLEFITNALAKMQLKSCRGDTLAELLDNLREVASIDDLPFQHDTPLETERETGSSGTALADDESDLESFSHERLVPVIIQPGGAPSNNDPNEALDQMSADNLTQDAPADEDEVTHTARRERNQRKEVRRTRAAERAHLPPRNLNNEFNNAADPIFRIPIAAMTEATLRLMTMPQNSKLERVINLTKNAVEQLER
Ga0314731_1015177	Ga0314731_10151772	F069563	LRGAGLMGDEERGVLEIGEVKEGTTHLARSMATEAGPAGIEAGSHLLVGVDCAEGSLRGPEVYGSVPPGGGSGMSRFHHRH
Ga0314731_1015945	Ga0314731_10159451	F040454	MHKTFINSLDSTLEFKGASPRERLKPTEEEKGQAGRPRGVGPAGLLPVGLHFFGFFFCELFDASQDYVLLNFALDSTILPSK
Ga0314731_1017373	Ga0314731_10173731	F069562	LLLLDLLNHNLDPQFCESNAPKWLGEDVPELSSSLDMLELDLSTIDAVTDEVILGVDVLAPVVVDGVLC
Ga0314731_1018420	Ga0314731_10184201	F040444	RHTQLNTPREEKRTGGGVIELPSVVTLDGLNSEAELSGHPGKGVEEGGEGLSLGAQRESLRVMGKIINNDQVIFVARHAEYRRCPKVTVNKIKNMRSMRRRKGKRKSNMMT
Ga0314731_1021380	Ga0314731_10213801	F002654	NYQTFNDKVVCQKGNSPEEVFKVPKFLLSEHKEVFKLYNQEIGLEAAIF
Ga0314731_1021733	Ga0314731_10217331	F102251	MKNNDKRIITIFFNIHYDVHYYSAKFEIKIQLMYGETKKDKVYMG
Ga0314731_1022834	Ga0314731_10228342	F074256	VPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVARLASARCRPRVPAIDAAGADVSH
Ga0314731_1024570	Ga0314731_10245701	F061504	MENPSLNISLLCLAPKYLDLILWALSFGLHWRVDMHERASNHHGLRSFVRALAFAFLRVI
Ga0314731_1025473	Ga0314731_10254731	F070783	MALVDVDVAFDIMDSYMMRITCMLRERELMTLVGVIYIGYIVDMNFTCMLFFIKI
Ga0314731_1025655	Ga0314731_10256552	F041531	AKAVTVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRITGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGRPKLSPLWEKGADWGLVPASFQTEEEERGLAELEQFRRDWDSGFISVGD
Ga0314731_1029660	Ga0314731_10296601	F031344	KKTKRGRLIEGTSESAQQENLEVKLPPPSSTYWRNEFQGASSGQGHPQGWTSQWEGNQDQAWGHGVAAPPKAYPAPPPFSNYDYSPPSYQGEMPNLSFGPQFFDLPQPEQEMRIMGAYARRNMEDIDAIQRHTSQLEDGTARIAYQMRLLGLAPPEQFGGAFQQYYDQGYNARGNQGE
Ga0314731_1029840	Ga0314731_10298401	F061504	MENPSLNLSLLCLTPKYLDLILWALSFGLHWRVDVHKRASNHHGLWSFVQALVFVFLRVI
Ga0314731_1030039	Ga0314731_10300391	F014470	GHTTYPAYKRERGLRVRRTYTPLPEPSDGCVFPEEMVRITGRDPTPVEQEALRAVQWRHGRWGGSKRDVFNPSCGKVRRSYHYRARPGFSYLSFVGPGKTKLSPLWEKGADWGLVPADFRSEEEERGLAKLEQFRADWDSGFIAIGD
Ga0314731_1030265	Ga0314731_10302651	F000459	SDMSSEGLLRRRCVMGFLSGVDNVKRGRGRPKLTWDESVKRDLKDWNISKEIALDRSAWRLAINVPES
Ga0314731_1031508	Ga0314731_10315081	F076725	NYAFRFSEFSLFSNPRGTSTLVAATKICIELLDYRTGPDPLPAGEGSGPLGTYSGERVLV
Ga0314731_1033964	Ga0314731_10339641	F065367	MSAEQKDLGDSAMGDGEKACPCCHFYGVPCRQVRATEDEATTRTNQRLFFGAKRKRSHQEQLAEDSLFL
Ga0314731_1035411	Ga0314731_10354111	F102218	GEINSTVFKNCIEEKKTNVSSLWMEEGVADVMGYASEATKSPRGFRMVVLANVTRLARQKTKTVHRLPGDLIAQVLASKRLKYAISARPAAEEPILTNLFPVVPMPDGYDLSREEEAATLRREVKRARENESWTGLHKQKIKARETKREMLILPGERIPGRKIWKMLQPKKTTPLETTLSCFAKAWEQKRKEALLADSPGDDPMMIVSDLSGIDRLVDAIKYWKQTKEKLGVCAVEAPIHADFVTFGSAESSWISNPVMGCDNVASRYVLP
Ga0314731_1035608	Ga0314731_10356081	F001705	DKGRPKLTCDESVKRDLKDWNIFKEIALDRSAWRLAINVPEP
Ga0314731_1036736	Ga0314731_10367362	F026779	VLIFASTHLLAHLVGHESFNMVELTDKSAVSEENQIPILEDKLKEEQRKEYEELVEKFKRECLKSYSVTRSGEVIKKFDLPSFQPLTEVQRENKMIDAVGQAVAQAFIKSATVMGNTVHNAVVKTFAESTFPGCMGPCYIQPD
Ga0314731_1038107	Ga0314731_10381071	F000459	LVDNVKRGRGRPKLTWVESVKRDLKDWNISKEIVLDRSIWRLAINMPES
Ga0314731_1038673	Ga0314731_10386731	F018302	VVPATVALPQLGKKKAFASEDACHVFAAVRLQAAARGLLARRLLQEMRRQMHEAALTAVNLGKGGRQQSRRCSAVFMREQGVVSAIGELQLCGSGDRGGGFLFAAGGDALPSATAFCYRPPRGRLRWSQSRLIPGGRTRAPLSFRWCPWDPGGDIRADPARGGCPPYLQESKIKSRSLFKISRDVKDLFLGVWFASSGVIVSVIVRLQLEDKLHVQVGCSVKGVKCLLGLSPLGVISRLLRG
Ga0314731_1040525	Ga0314731_10405251	F067332	PPSIHVYCHIIMLANFGDDEIRRACIIISLCVEFWMVFVVPLILTRSLRAYIPILKFCAALLSVQLLAIQIIFPEKFDYEKDLRNYRFTYYRNFYDLSEMFKWIHRLRSAL
Ga0314731_1045585	Ga0314731_10455851	F091151	VRPGLDNRFLRVGPSSGPRLPREDRVGWHHIGGQDVELTLYRRRGYRIVFRTRF
Ga0314731_1045924	Ga0314731_10459242	F094708	VPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALSTPWRLAL
Ga0314731_1047001	Ga0314731_10470012	F014470	GGAKRDVFSPSCGKVRRSYHYRARPGFAYLSFVGPGRPKLSPLWEKGADWGLVPASFQSEEEERGLAELEQFRKNWDSGFISIGD
Ga0314731_1047122	Ga0314731_10471222	F100267	MMLLNVKFSLSLRILGLDHYRFLCSCQTFAYIASRNSPFYPIHLFSRALLNSHXFCHYNENHLFHACLIIKYLMHSLXQAFQNMRLCISVQLVSFSIPMLVILISTHTHQQAPFGYKNKFLVIDTYPNLHDSHCLLMFSY
Ga0314731_1051626	Ga0314731_10516261	F018302	ALTAIDLGNWGRDLGKWGRDLAPSDGHQRSCQLAAVFTRMHISELQFYSSDRGGAFLFDIGGGTLPGAITFRHRPPRGRLRWSLSRLISGGRTCPPLSFRWSPWDPGGYLRAGPAQGGCPPYLQESKIKNCSLFKISRDVKGLFLGFRFASSGVIVSVIVRLQLEDELHVQVGCSVRGVKGLLGLSPLGLISRLLRGQVNLSI
Ga0314731_1052823	Ga0314731_10528231	F001543	MQSKDEIELAVLKAFREVLIEVLSFGFGVAVLILAHLLAVLLVDGFSLVHTVIYGAHKQTHNK
Ga0314731_1053341	Ga0314731_10533412	F030315	VIKYNEFVIIIKYENILLIKNDIDALKYNYRIGLDTLLVYTIKYEY
Ga0314731_1053532	Ga0314731_10535321	F055385	MDSLGPPSRFDDTAFQRWKILMQSHLQAKGLNVWRVTSEGTKSNSQQEKQYDAIAKCAILNSLGESVFNRVFACKN
Ga0314731_1053640	Ga0314731_10536401	F076725	CVKVKLRSSILGVFTFLTPAGTSTLVATTKICIELLDCRTDLDPLAAGGGSGPLGTYSGERVLVSRGGPEPV
Ga0314731_1053756	Ga0314731_10537561	F000459	RVDNVKRGRVRPKLTWNNESVKRDLKYWNISKEVALDSSVWRLAINMPKP
Ga0314731_1056412	Ga0314731_10564123	F001705	GRPKLTWDESVKRDLKDWNISKEISLDMSAWRLVINVPEP
Ga0314731_1057446	Ga0314731_10574461	F052301	ATPRPVVASKGARKPASVTPTQGLSAEFRGDSRIKDAFVVTVSGPGGTRSFTVHRPIGDTPLGDGAWVFTPTGEITTLLSRMENPYEKRTEELRAKQRISWAVTKNLAKFDEDGTTLLLPCGKKRAELLKEAHRAAKEAAKSKNTKPGAQDFLLHLSPQEKKEETALSDYLKSENVVRAAEKALPIPPYETCGGPQADHKQVGVNYLQNVGNSH
Ga0314731_1057450	Ga0314731_10574501	F000459	VLKCVDKVKRGRDRPKLIWDELVKRDLRDWNISKEVALDRSAWRLAINVPEP
Ga0314731_1057628	Ga0314731_10576281	F041531	GRAVGVQDYPPGYRLNTDKTIRAENVAELNSTVFLRSGGKWREVRHLRRGGAVADFPGMIHMAKAVTVSPGFVDAFQRCRIGRRWGFLPSQLGHTTYPSYLRERGLRVRRAWTPLPEPSDDVVFPEELIRITGRDPTPVEAEALRVVMWTHGRWGGSKRDVFSPSCGKVRRSYHYRARPGFAYLSFVGPGRPKLSPLWEKGADWGLVPASFQSE
Ga0314731_1058878	Ga0314731_10588781	F050083	PFFMTKINVTNSISFVTDLIAMSNNGDMKNDVAVDLTMTWIAMMTWLLTWQ
Ga0314731_1061911	Ga0314731_10619112	F000927	MQVDHSSYFIFLYRTFNMGSGATKFTRATSKHILSTEIFPDFIHLYSRGDKKIKNSKPFTKINSTERFTEDLVLKFLPETIHEINILQKIFQDLTHYDKLIIQLT
Ga0314731_1062395	Ga0314731_10623951	F104115	NGDDCLVSSDVYVSAESYPSGWKLNDKKTIRSEVVAEVNSTAFLSGGGKWREVRHLRRGGFQTDFKGMLHIASAVRGSREWTDAFVHSRIGKKWGFLPSQLSLHPKSYPAFSRGREMWHRCHTPLPLAPSQDRNEGILGLRRALDPDERMAFTAWQWSHGRDGGRKRDVYSPSVGEVRRTYAYKVVKPWSRLSFVSKLKSLKFD
Ga0314731_1062667	Ga0314731_10626672	F082000	VTFGQDLKARDQSDVMFEAFSGILPVSRLIILVGSGFPMGPRQTMLGCSDKGMKIE
Ga0314731_1063451	Ga0314731_10634512	F046814	VVKEDDNKQENPGFGFWNAVDLMSYSNEEFSLPNIDVANNSEMKNTDMIIAWN
Ga0314731_1065628	Ga0314731_10656281	F000459	NGVLERVDNVKRGRGRPKLTWDESVKRNLKDWNISKEIALDRSAWRLAINVPEP
Ga0314731_1065781	Ga0314731_10657811	F104214	VYIAWDDCIEPLGRIYRSTWLGGQVASPRDKEGYPGITINPKLTISG
Ga0314731_1068375	Ga0314731_10683751	F000459	APVRNGVLERVDNVKRGRGRPKLTWDESVKRDLKDWNISKKIALDRSAWSIAINVPEP
Ga0314731_1069602	Ga0314731_10696021	F096451	GIRRLLNGNASEYNIVGCLQFPLTYLAVVGTIGLLLLIFLVVVFSHVILMPRRNLDSRVRCCHMIELLGARWCLGMCDVTHCNSILCNLTSVLTSDPYSGV
Ga0314731_1070264	Ga0314731_10702641	F079533	VSTQLVLNKYNTNYEALRLADSTALAFKSWQNFVIAIYYKLMNYHKPTYI
Ga0314731_1071801	Ga0314731_10718012	F086473	VASTFKNLTTATTLCDLSKFINTDGVSHKVMISNTTPPVVLILIAESKQAIPIELASDRQSLDFYRSNKLSNYSNSGLVFSTKVS
Ga0314731_1072361	Ga0314731_10723612	F007513	VVLTLLQRVIALPVMLLVVLSTAMDHGTEALEEVTMHHAFLAVVVVILAVDGTGDTFCLILLTPL
Ga0314731_1072732	Ga0314731_10727321	F032131	MLAIEEFSSKLVNTTQLLVERYLEDILCPVDIYNPQPSSEVHKNTDAGISESPDSRL
Ga0314731_1072797	Ga0314731_10727971	F040443	MKLSAGLELVLIKVTCSEQEVMIGSGVADPVGLEVTTGVSTVLAYSLCTSVRVFKVSVAPVSAS
Ga0314731_1074461	Ga0314731_10744611	F070702	NGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTVFLKSKGRWREVRHLRRGGAVADYPGMLHMAKAVTITPGFVDAYQRCRIGRRWGFLPSQLGHKTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRITGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYH
Ga0314731_1074601	Ga0314731_10746011	F091151	VRPGLDSRFLRVGPSSGPRLPREDWAGWRHIGGQDVELTFY
Ga0314731_1078254	Ga0314731_10782541	F085070	SELPAGSELTGGVAVVEALVLALPGRGSVEVVTGSAEDVSTSEVVSAEAAGCVDC
Ga0314731_1078464	Ga0314731_10784641	F026180	VHPTARHSAADCREIQKLAKRVSGRREQSSKDGSPPPRQRPSKEKASDSGATAEEKELGYQSPARELKGVYHDDNFDSDNDDRCKKLYVMYDGSWELVSRRDVKTLRREVLSVKPGVPKAAPHQRWMNTTISFGPSDCPENMAGAGVLPLVTAPVISN
Ga0314731_1078871	Ga0314731_10788712	F000459	GSRRVDNVKRGRGRPKLTWDESAKRDLKDWNISKEIALDRSGWKLAINVLEP
Ga0314731_1080211	Ga0314731_10802111	F055385	MDPFRPAPRFDGTGFQHWKILMQAHLQATGLNIWRVVSDGMKKNGGQQEKQHDVTAKCIILSSLSDNMFNRVYSCENAKELWKTIIENHEGTDDT
Ga0314731_1080337	Ga0314731_10803371	F093512	MSKDDWKAVYAKDDDLKLTKAGGKKIRRTTTPPIFSSGMLDIFLIE
Ga0314731_1080780	Ga0314731_10807801	F023044	GRGDFGEVLGQLQSTLTNTVQSLAGNLLAQLLGSLGGLIGGGRGLGDVATAFNEFLQNVQGTITSLGQHVLNQGLAAVLGGLGSLGGSRGLGDIFSGLSAQVGAAVTAAQGAITGVVGNLSNIGSNILDASKPHWQQLQEQLVGHGLNVLGSISETVNNLHGSITGGR
Ga0314731_1081374	Ga0314731_10813741	F100268	DLLQVDPVHFSLGSEDWRAFEELADDMEMAAAAISKDVSIEAVIGNVFADD
Ga0314731_1081734	Ga0314731_10817342	F102612	YHQRLETLYHSLPDLLTTEQQEDKTGIETLEQDVGKLDVKEQNLEDRVNKYCQEFLYIGGPTPHKQDLTST
Ga0314731_1082717	Ga0314731_10827172	F000459	RNGVLERVDNVKRCRGRSKLTCDESVKRDLKDWNISKEIALDRSSWRLAINVPEP
Ga0314731_1083126	Ga0314731_10831261	F000459	VRNGVLERVDNVKRGRGRPKLTWDESVKRYLKDWNISKEIALDRSAWRLAINVPEP
Ga0314731_1085280	Ga0314731_10852801	F055345	XIDLNEATAMRPEAKAQIYSVNENSPANQVARMXGVLDQLERTRRKRKKGGEVADKKVNY
Ga0314731_1085569	Ga0314731_10855691	F086518	VDRSPELNKVRAIYEPRKPPVEGEAELPRKWARPAGLMGLGRPAYPLSGPPRSHLSRVDSLHLLEFMSFTIAPLWTSLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLISVGLVLWALLEDGCA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300032790: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences