Sample 3300031582

Basic Information
IMG/M Taxon OID	3300031582 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267081 \| Ga0228560
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	29219720
Sequencing Scaffolds	16
Novel Protein Genes	20
Associated Families	20

Dataset Contents

Total Genome Size

29219720

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	8
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F008934	Metagenome / Metatranscriptome	325	Y
F024710	Metagenome / Metatranscriptome	204	Y
F044865	Metagenome / Metatranscriptome	153	Y
F048727	Metagenome / Metatranscriptome	147	Y
F050807	Metatranscriptome	144	N
F055416	Metagenome / Metatranscriptome	138	N
F060526	Metagenome / Metatranscriptome	132	Y
F068421	Metagenome / Metatranscriptome	124	Y
F069666	Metagenome / Metatranscriptome	123	Y
F074330	Metagenome / Metatranscriptome	119	N
F076132	Metagenome / Metatranscriptome	118	Y
F078160	Metagenome / Metatranscriptome	116	N
F079542	Metagenome / Metatranscriptome	115	N
F079587	Metagenome / Metatranscriptome	115	N
F080775	Metagenome / Metatranscriptome	114	N
F091182	Metagenome / Metatranscriptome	107	N
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228560_104348	Not Available	1339	Open in IMG/M
Ga0228560_104914	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1259	Open in IMG/M
Ga0228560_105149	All Organisms → Viruses → Predicted Viral	1231	Open in IMG/M
Ga0228560_109292	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	899	Open in IMG/M
Ga0228560_111059	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	811	Open in IMG/M
Ga0228560_111970	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	772	Open in IMG/M
Ga0228560_112054	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	768	Open in IMG/M
Ga0228560_112135	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	765	Open in IMG/M
Ga0228560_112234	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	761	Open in IMG/M
Ga0228560_112539	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	750	Open in IMG/M
Ga0228560_115313	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	653	Open in IMG/M
Ga0228560_116814	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	612	Open in IMG/M
Ga0228560_117002	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	607	Open in IMG/M
Ga0228560_118911	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	560	Open in IMG/M
Ga0228560_118983	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	559	Open in IMG/M
Ga0228560_121242	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228560_100328	Ga0228560_1003281	F060526	LSRYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGIDQRAQGYTPGNGVGNWEIYQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLSVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSPAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSVTLPGQALKDHKKWLQVWQRLDIGDMYYFPLWEKGVHDVLQKHFKDLCLIFFAYCRSMLGSASAEDAAEMEMAEFKDFVDECGLETKQISFDLMSNNFMKANAINSAQVRDAHQEGRRSAGTKMDGRTTAEVATQKRNDGSETKKDAELVLYEFIGMLVRIAFQRANPTFGNYGNKKAVVHLVNYPGSGMEGNGCLQTMIEDEILPRARKDTSAVFRETVMTEMSVVKVLDEYRPKIKAWYDLTCADDTKQTTITDKLQMDQWKRICDEKDLVGTWSCFRESDISGHPGCKTEYKWRLSMSQASMAFIDSNPRQGEGSINQQQAGQSTGTDSFATLDLEEFLECCARCGMDMYRAVKEVSPANAVKGFMQNLLGEASPDEVVVRATYIKCDRYDAKGLTKPLKGESQVDLDKWIDCWQRMEIMDVYLWPLWEKEVHDIMHALFKELQSIFLAYCRSIFDQTGADATEMSLDEFHDFVVDVGLETKKYKFEQMCNAFIKANAINTAQVHAQKKDLRRDKDSKSHDAWDFQKATKEPGKVKMGDSNYEAKKDQELDLAEFMNMMVRIGFWRANPGFGLHGNKDEVVSVPLALSTMLNEVILPRAKRESTAEFRTKEMTDPKVLTVLDQYKSRLREWYDKKVADDSDDLAGKSAGIISDKLQFEEWLRVLDRQDIVGVWEVEQMSEITGDESTRGNIKIRLSIPTCKVCFVDSQSQKDAHTALMGGKSDEASDQATLDFDEWLECCCRTACKKYSAIKQMDASQKVKSFMQNFFGEATEEDCVRTATYIRAVRFDLSESRPLKDESPEEHAAFLTEFKQLDLQGLYGFPLWEAEVHDLLHANFRELASIFRSYCKSVGEASSDDSSKTMDLEEFNDFVIDCMLETNFGQAYTFENMKEQFSRADKSGKGLAGPQANAELVLYEFLNVITRISFWRINPECGELEMDHQDTILPVPQCLEKTLRECILPKAHRDDAGQFRGTVMQMPEVQASLAEGRPRLQAWYATIPLDDNQKVGITQWVSTLQALNVLGTFTCTQGSDIVGDDRVGTEFKCRLSVP
Ga0228560_102500	Ga0228560_1025001	F024710	AVGPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESYRNTWTKSPPEIVAAGLCDTSTYKACFTVPDLSKVDATRKMAGHVGSWH
Ga0228560_104348	Ga0228560_1043481	F050807	LDTCTASVQGRALAGQLAGAMADDDEPTFKPTSAASGKPNIGLNLSAMAEGDMELKATDFLTTARASNEVAITVRGNAKVKAKRILQLLPAILGKERCKAGWRPKGSQIAVACVKDGNCILSLYSRKQMPKPVEVHNLGPGTPTWLDWDCQGTSLAVMVEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSI
Ga0228560_104914	Ga0228560_1049141	F044865	GGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228560_105149	Ga0228560_1051491	F008934	VFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIEFGEMAHVQVGKNRNH
Ga0228560_107398	Ga0228560_1073981	F079587	DFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228560_109292	Ga0228560_1092921	F102393	VCSCFFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228560_111059	Ga0228560_1110592	F078160	MRATSAEEQEEALPAKKAKHEEPIRVRARDGEVVMLSQDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSS
Ga0228560_111112	Ga0228560_1111121	F068421	TLRYFAATVMKEHERGWVAGPHTVPWNPAPYRQVPYELRGLAVKTNEPWIEDVKANPEMNMATSGFNRLDDGQTDSSALLFQRRKEEDASIAANRGLIPWHDSPVLWRFPSGQAGRSIEYGETASTLAQEYNYMN
Ga0228560_111970	Ga0228560_1119702	F104622	AADIMVYCAFIPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQV
Ga0228560_112054	Ga0228560_1120542	F079542	MLTNRTSSPTGRYHPDPERRLELRKADLHANIDYLAPNGAPDNDRKAKESSWLVSQAFIEGLRYYPTGKAVLESNDSEATYSGNTHGKKAYNMEHMETDLRARLEIAPRFDNQEWRDDQLPREWVPDKSPSMKKHMARVRERLKR
Ga0228560_112135	Ga0228560_1121351	F048727	ASGHMSFAMAVRFNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG
Ga0228560_112234	Ga0228560_1122341	F007736	MIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG
Ga0228560_112539	Ga0228560_1125391	F080775	EHLLHVLNTISSRKLVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQGKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRRG
Ga0228560_115313	Ga0228560_1153131	F069666	SRLCRRDGQPVPTRLDEITDLDVEQLIKAGRPGDAAVAGRMLPGLARLHGYGYVVDVAAVRAADLQNGTVEDEFLDEDEEDEDSAAGNTRRPSLLHGTAKDALNSCISGKGEPPFELTIAAVACAGSGVVCGIPVQQMREDGVTEFDLSNRGLHLAAAMLVTYLIPAMSVLKNCNLLQNSLGIKSATMLAKMGAERGIMLSSMTCDQTEAYFYETDL
Ga0228560_116814	Ga0228560_1168141	F074330	MLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPS
Ga0228560_117002	Ga0228560_1170021	F076132	AFWRANPDFGLWKDKDNDGKMDKEEVVPVAFALSNMLNEVILPRAKRENSAAFRSKEMQDPKMIAVLDVYKPKLKEWYDKKVLDDSDQKGMAVSDKIGFQEWLRVLDRQDIVGEWEVEQMSEITGDESTKGVVRCRLSIPTCKAAFMDSQSAEQLGVAQADATSEQSVLDFDEWLECLARIANAKYQSIKQMDPAAKVKAF
Ga0228560_118911	Ga0228560_1189111	F055416	LRDAAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228560_118983	Ga0228560_1189831	F091182	RKWELYPEGLVSFEVFADSLNDIGFPAMGRWNEVESVFYSWEPDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPRHTLQDGRNEITPA
Ga0228560_121242	Ga0228560_1212421	F104431	TAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031582: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences