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Sample 3300031502
3300031502: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R4 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300031502 Open in IMG/M GOLD Reference Gs0132857 | Gp0330681 | Ga0314819 Sample Name Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R4 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 16193875 Sequencing Scaffolds 6 Novel Protein Genes 6 Associated Families 6
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 4 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia 1 All Organisms → cellular organisms → Bacteria 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
Location Information
Location USA: Pennsylvania Coordinates Lat. (o ) 40.7997 Long. (o ) -77.8629 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F000344 Metagenome / Metatranscriptome 1257 Y F005048 Metagenome / Metatranscriptome 413 Y F010686 Metagenome / Metatranscriptome 300 Y F033058 Metagenome / Metatranscriptome 178 Y F053640 Metagenome / Metatranscriptome 141 Y F072453 Metagenome / Metatranscriptome 121 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0314819_103780 Ga0314819_1037802 F072453 VEISGWTLVALACVVLVNTLFIVGLAVALFTLNKKIDEALDKAAPLLQKATETLNQVEETTSQLQQRVDRVLDKTTRLVDQVSERVDTTTAIAEEAVTEPLIGAASIMAGINRGLRVYSERTSEKGNGK Ga0314819_104903 Ga0314819_1049031 F053640 MSAQRSEMVAESTTGIIPGDRGKAGGNWCRPPLMPAKAVMRHISPVPLAGVVSGQSTHELGTEPQGAIRNRVEWSQATQGVSTCASTQLPQRLRLLLRRPERHRVSRRDDPAKRPHSPHEWGAQGTYGGGERTDLGKVREPPHRGGVKHTSPSCKRQRSLRGKRSDP Ga0314819_105025 Ga0314819_1050251 F000344 MRPKHPHAAESGVGKHTARESEAPNSMRGKERAANAH Ga0314819_105867 Ga0314819_1058671 F033058 LTWFAGRWRNHQSKRAEKPHSKIQGRKALDGPATRPTIPLAVENSVGKPAAAREGDAPNVGMGKRAWRTP Ga0314819_106750 Ga0314819_1067501 F010686 RALNICGQATKGAWGMSWRQKTMTGVENCEKSGVAVKQALIPEFPN Ga0314819_110289 Ga0314819_1102891 F005048 GSESVGLRFEHATPRAEDCIQDVVVEAVARAHMGNSHVVLVVEPRHAVRQALVRTLRELGQHAIGVATALDAVQLLVEEGERIDTAFIEAESTSLKSDELVEFLAHNHPRVRRVLMGDSAHIQASWLAEATGEVHALLETPCNRDVLHRLLSRIENVPMDAQLS
