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Sample 3300031489
3300031489: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R2 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300031489 Open in IMG/M GOLD Reference Gs0132857 | Gp0330673 | Ga0314811 Sample Name Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R2 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 13722610 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 1 All Organisms → cellular organisms → Eukaryota 1 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
Location Information
Location USA: Pennsylvania Coordinates Lat. (o ) 40.7997 Long. (o ) -77.8629 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F022207 Metagenome / Metatranscriptome 215 Y F042676 Metagenome / Metatranscriptome 157 N F054606 Metagenome / Metatranscriptome 139 Y F098404 Metagenome / Metatranscriptome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0314811_103754 Not Available 701 Open in IMG/M Ga0314811_104019 All Organisms → cellular organisms → Eukaryota 661 Open in IMG/M Ga0314811_104359 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 620 Open in IMG/M Ga0314811_104644 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 590 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0314811_103754 Ga0314811_1037541 F022207 TFEGRTALGGIALQPVRLVLLLLVGPREGENDFLEFPSVEEAVAYARELYGERRFQLEGIEDRSGRSVVSYDVLHDRCRAPDRIQERRFG Ga0314811_104019 Ga0314811_1040191 F054606 SSPMGGNDNGEFESFITHPWRKYCTTRWEFLPRFIPLFTFAFTILVMVLVLDGKLKVHAGVYQRTSVNGYSSLEQAGSSERVRNILKAWSQTQRLTAAFSSGLHFLFTFLYVSVLTMACCWGANHSPLKTLGDVLAWLQLFGGFFDVILQSCCAYMTIHGPTTGLPELALACVVIHLIILILGALYFVICRIGHWLFWSDISRRGPFDDKVY Ga0314811_104359 Ga0314811_1043591 F042676 RLSRTHKTHHKMAQQEYSIGGMITFPQLTASYGLISGVIGAASLINPHLCYDLVGQPSRWVPMLESSSGLYTLRLFGLQTVALAAVSLHAAVNVKEPAKRQQLSNVLAALNIGNGLIAAWMYKEGILNPLGVSIHSGLSMALGLGFLVYGLREDRRTGAGEPARD Ga0314811_104644 Ga0314811_1046441 F098404 AMRSFLVCVVLALAISCAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPRECHLGPK
