Sample 3300030965

Basic Information
IMG/M Taxon OID	3300030965 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0115653 \| Ga0073983
Sample Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S8_0.2 metaT (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S8_0.2 metaT (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	91279702
Sequencing Scaffolds	20
Novel Protein Genes	24
Associated Families	23

Dataset Contents

Total Genome Size

91279702

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Eukaryota	6
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Dictyochales → Dictyocha → Dictyocha speculum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Dictyochales → Dictyocha → Dictyocha speculum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum

All Organisms → cellular organisms → Eukaryota → Opisthokonta

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Southern Atlantic ocean
Coordinates	Lat. (^o)	-17.0	Long. (^o)	-29.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic ocean

Coordinates

Lat. (^o)

-17.0

Long. (^o)

-29.0

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000326	Metagenome / Metatranscriptome	1295	Y
F001255	Metatranscriptome	736	N
F002297	Metatranscriptome	573	Y
F002457	Metagenome / Metatranscriptome	557	Y
F002870	Metagenome / Metatranscriptome	524	Y
F003924	Metatranscriptome	461	N
F005240	Metatranscriptome	407	Y
F005343	Metatranscriptome	403	Y
F006501	Metagenome / Metatranscriptome	371	N
F006735	Metatranscriptome	365	N
F009665	Metagenome / Metatranscriptome	314	N
F010808	Metatranscriptome	298	Y
F011730	Metatranscriptome	287	N
F016765	Metatranscriptome	244	Y
F019659	Metatranscriptome	228	Y
F021467	Metagenome / Metatranscriptome	218	Y
F021918	Metatranscriptome	216	N
F028415	Metatranscriptome	191	Y
F033688	Metatranscriptome	176	Y
F044287	Metatranscriptome	154	N
F049396	Metagenome / Metatranscriptome	146	Y
F078792	Metatranscriptome	116	Y
F089917	Metatranscriptome	108	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0073983_1000704	Not Available	532	Open in IMG/M
Ga0073983_1001050	Not Available	503	Open in IMG/M
Ga0073983_1167667	All Organisms → cellular organisms → Eukaryota	605	Open in IMG/M
Ga0073983_1273654	Not Available	514	Open in IMG/M
Ga0073983_1284029	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Dictyochales → Dictyocha → Dictyocha speculum	537	Open in IMG/M
Ga0073983_1337256	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	557	Open in IMG/M
Ga0073983_1342056	All Organisms → cellular organisms → Eukaryota → Sar	516	Open in IMG/M
Ga0073983_1344241	Not Available	508	Open in IMG/M
Ga0073983_1344965	All Organisms → cellular organisms → Eukaryota	526	Open in IMG/M
Ga0073983_1347969	All Organisms → cellular organisms → Eukaryota	702	Open in IMG/M
Ga0073983_1350876	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	569	Open in IMG/M
Ga0073983_1356635	All Organisms → cellular organisms → Eukaryota	692	Open in IMG/M
Ga0073983_1363924	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	674	Open in IMG/M
Ga0073983_1367551	All Organisms → cellular organisms → Eukaryota → Sar	549	Open in IMG/M
Ga0073983_1369237	All Organisms → cellular organisms → Eukaryota → Opisthokonta	814	Open in IMG/M
Ga0073983_1369289	Not Available	643	Open in IMG/M
Ga0073983_1369877	Not Available	542	Open in IMG/M
Ga0073983_1370605	Not Available	664	Open in IMG/M
Ga0073983_1372275	All Organisms → cellular organisms → Eukaryota	712	Open in IMG/M
Ga0073983_1372406	All Organisms → cellular organisms → Eukaryota	936	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073983_1000704	Ga0073983_10007041	F002297	KMDTTLAIDGEKISEFVFDNTQAKKHIKFFYSPDAYTKDYLFTDEWEYPGHSGCKWNTELKRGDVSIWNWVGDYSFVNNANKFEMKTMDKIVQTEMSPFYGLDHFYLGRYYRNGERHRTVTYEKKNRNFLLGKLFVENTITLDGEKFSQEKLDTRSTPYTMVWFSQPVRGLFPITR
Ga0073983_1001050	Ga0073983_10010501	F009665	MSLLAKVLLSLLACQQSLGAKVVRHEAKLDAVGSQTDASELLASVEKMASAEHVDPDAIKLIKDLVNNQLLPALMESHKIASDDIKARLDAIAKCEQQSREQDKGIQNHTATVVNNARVIHRDCRDKELRMTKDANEKCQFLD
Ga0073983_1167667	Ga0073983_11676671	F001255	FLAGLASAVPAPEADPLLYTGHPLTYAVPYVTYHAPKCETEFEEVKGQSCVTKPVTECNDVEVPSHKIVTEDVCQNVTTAECTHSTYSAGVYYGKREAEADPQVLVGAVPAVVPYHSCVNKVTEVCYPVQKVEPTTITEKSCLLKGEVECTEVVVATIPKVTCTHEEHTKPADDAAAVET
Ga0073983_1273654	Ga0073983_12736541	F010808	VVLSLFALHGSALLRKQDPCAGCTEEHAIKYQKCTKEFGDPCQEMMTKTIEKKDYLGNKICKGQKEDKSCPKFDVNSGKECPDDWNGDPGMDWKTNMKWECEEVIETETVNVMSGGEGEKKDVPCCIVKTKHENCLKCTTLDCSHGTCSDFVNKKYYSERTLGEEPLDVK
Ga0073983_1281846	Ga0073983_12818461	F000326	QMTDKEWEERQKTRQQEMEACSKALAILSGDDAHDLFTRTYNPTFVQQGRVMQSDRRQKASKLLSDVATKVSSPKLATLAVRVRLDAFTRVKKAIDDMIAQLLVEKADEIKHKDFCVDEFNTNQLQTEKKEREKQDLIAKIEDLEMSIEALAKAIETLKAEIAEMQVQLKRAGEDRE
Ga0073983_1284029	Ga0073983_12840291	F028415	KLKSEILMHAKCGDMTWTGSSNAPDKSPCNHIFTPDKGAFIYTPKNSLEPEADGKFCCRSVNAGSTQFTGGVPRDWMKTGKYAGTYDSFDGDYYKGPIEMFTWTGAGLDFWYYAKADGTPVQQGESCYSPGGKKPQACDKMMPITLYHDYDPSTFKNATFTSSDFEVPDICTSTSVSYT
Ga0073983_1337256	Ga0073983_13372561	F002870	KFSALALVAVAAIQNREAAHLVNQALAMTEAGSEAKAHLENALSAMTTKSDAEVLDSHSQTVSVPIDEKRALTLKVSPTYTLDEVNSVTLKSFRKIVGYDTFESIRKKNRNEAKDTSDYYNVTVSMMIRRKPVEAAAAPARDPYAPDGAPSLASTLDKGFPYDD
Ga0073983_1342056	Ga0073983_13420561	F016765	SSHLVCRVPVAMARLVLLLALVASASALKRRNKLDINQVVYVEGQPVLGNDVGSGALNECRAFAEYMVSNPDKPEVKVCGTGVKMTVFLLGRCGEMSTGKGLPSAGMARQWSVGACDPKYPPDICETFSPKTDKRFGCSQSYKIEQC
Ga0073983_1344021	Ga0073983_13440211	F021467	EKLAQAQEDLTVTTKSFNEDTAYLKDLKRDCQTRAREFEVTVKDNNAELTALGKAKAILLKKFALVQTHAKVHAMAKVQDEDPKSRALRSIEQLGRKLHSTALVSLAYRAASDPFGKVRSMIEDMIAKLLQEAAEEATQKAFCDKEIGESKASKDEKQGKLDKTNSRLEKAESTIATLTEQVTTLSGEIAES
Ga0073983_1344241	Ga0073983_13442411	F044287	FLLQTTVSWLVSSEKMLAPVRSAARPSARAFSAASPWGTDGWRHDKNAFKAWCNAAVAPGVSKEKREFFGFLALSFGDVDTNKDGFINLEEFDRLLEKVAAVPRRFGLAPVQTSDSLTRQMGHKKIFDRLDTKAGPARGVLGLDQFV
Ga0073983_1344965	Ga0073983_13449651	F005343	MGPNMNFSEVSTTMKCIISLTIQYMVVYTALGICRSYLDFTKTPYDDSQVQVALKSASMTMFYAPMVCLMFVGFRMRVLQLTKGTGNPQDWVRMSMQAVTYSILANTLLVLLVPLFTAKEIKTTKEGDLDPEAKAPFESSALATIFNVVRYLTFLGLYVGFGAVCVGVFKYEPPA
Ga0073983_1347969	Ga0073983_13479691	F033688	IAKLLQEAAEEATQKAFCDKEIGESTASKDEKQGKLDKVNSRLEKAESTIATLTEQVTVLSKEVADSDAALAEATALRAKEKATFTAVEKDLSESQEACAAATEVLREYYEGASFIQTGQKAKDQADEQGDGSGILGMLEVAESDFATSLAEARTVEGTAQAEFDKMKGEAKMLKATKTMEIKGKQSEIGSLKTSVSDLGTDKEGLTGELDAVLAYLDKLKPQCETKVPSYAE
Ga0073983_1350876	Ga0073983_13508761	F011730	CGKGFEKLVPGSKKYFKTAEVKLFTHPGRWELNGTVEKELQCWFAAMNTDGCGDLPSQYSTRNKALTETCLDYKKDWLAVWDLFTQGEFKWYKGMFPAEEIDPSEEEHGVTLAGKKDTAETKVAAAAETKVYYSEAMKTMKELTKKEMLCLTLFTIDDECVKHEYIRLA
Ga0073983_1356635	Ga0073983_13566351	F003924	LGVMIALRLTLLATAAFAAPAADADADPQLLLGHGLAYAAPLVHHVVPVCKVVPKTVTVGQRCHAEPDCTTETVVVGRHITGHEEPTCTDVEHVVPAVHALGKREAEADPQLLLAAPYVAHATTKVTTKHCVPGAPIVEDVTTDVTKCVPKSVCEDVTAEVLETVCGEPAAEAEAVEEA
Ga0073983_1359121	Ga0073983_13591211	F078792	LTAKIEDLSADIAADEAELKEATAIREKEAAAFAAEEKELKEVIDMLQRAIAILEKEMAGGASMMQLKTASNLEQALEVMVKASAISTADAGKLSSFVQTQDSDEEMGAPAGEVYESKSGGIVDTLNGLLDKAEGQLDAATKEETTAKNNYDLKKQSLTDEMKYANK
Ga0073983_1363924	Ga0073983_13639241	F006735	KPAVGVPGTTLFCFSFYMEDTGSTKKFYDLSLLRTNLFLGASLFGCEGYKVYSDVETWLSPGQVNTVKVDDVNGDFHFAKRKLTGTWVNSPIFLQIWKAIRTEGLWANHDWTVKVDADSVFLPMRLRTKLSSQKVTSGGIYLENCKYVNYGFFGNLEVISHQGFSTFLANLEDCTKALNWKGKEKDTGMEAWGEDLFMQRCMDLHGVDKVGVWDLTTDSMCKAF
Ga0073983_1364671	Ga0073983_13646711	F002457	FDYLCEKVAAMPRRFGFAPSWEAEYGGSVEKRTAARKAMFDAVDSKQGPARGWIGAAQFTDWATTHIAGKIAAIDTSSEVDFYHVSNYSEKDFLAAIETAVTNKNSREYASLYEFLLTAFVETDASCRGEINFGEFNKLIERAAAVPRTFGLAPPEASKETRKKFFDSMEDKQMGG
Ga0073983_1367551	Ga0073983_13675511	F005240	EQRKEENEDYTALMASDAAAKELIEFAKNRLNKFYNPKLYKPPAEFAQVHAHNGEAPPPAPEGPKAYSKSSEESNGIIAMMDALIKDLDKEMTEAELTEKDAQGDYEAMMKDSAEKRAEDSKSMTDKQGALADLETGLGQQKDDLASTKKELGATVQYISTLNNECGFILKYYDMRKEARAGE
Ga0073983_1369237	Ga0073983_13692371	F019659	VLLLELNILLVQGVDTVNHGLDKLDLGVSQSVLVGDVVGVSSLATRLTAGATGLDSELLAPGLELVNALLGPSGEVDVDGGPHASAQVGGAGVDVAELLGQLEVLARLSLDAVTDSLDATGEPLKDTLDVTALLHGDDPGLILLIDPDKEGLGLVVEDATALGPVTLHT
Ga0073983_1369289	Ga0073983_13692891	F009665	MALLAKVLLSLLACQQCWGAKVVRHEAAIQANGDMAITSKTDASELLSSVEKMASAEHVDPDAIKLIKDLVANQLLPALMESHKIASDDIKARLDAIKECEQTSREQDKGVQEDRDKELGLTKDANAKCQFLDFLTEPAAEPKESADKKTKLAYGETMMGYWCNKDEQFKACAAATDALAPVVKECNKKQTQF
Ga0073983_1369877	Ga0073983_13698771	F049396	PTPTTPLTSMNPTSGGSLYITKQLSIPFVKAVANVHWKIHKSWKFEPEREVPEVGDVGTLEKELPTLGLVKNSQTLRKYINTESYYEREYHFTSNFLPEVEGYIANMTVFYDAESPEKSFVVYRATWDQGEVSDMFKALMKGLIDTFEDPTPTMPLTSMNPPCGGSLYITKQLSIPFVKA
Ga0073983_1370605	Ga0073983_13706051	F006501	CQFLDFLTVPAALPSESADRKTRLAYGETMMGYWCNKDEQFKACAAATDALAPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTATRAAYDTSVASTTKLVAKWKVEYSALKKINCFLDVWLSDGDANTVSSEKLAACKATDADASIMNIDFGTPVKEFVCADAGFGTLPDYPGTPDFVTKEYGAWPDLVQDVIHCHIEDPVAVSTTAGANTPAYR
Ga0073983_1372275	Ga0073983_13722751	F089917	NMHNSLFPSEAGFGGFQEFRRMDRLMEQMDRQRAEFLQDMDTEPAAPEQGKPFAQSYSFSSFTSNTNGEVVTHRSENFQSSAGEKLSRSRRAIGQGESAKAIEETMKGEEQTRTLHNMEEQDLQAFNQQHAARLHWQPFHALEPRAEQPKHALHAALEQDIDRVAGSQ
Ga0073983_1372406	Ga0073983_13724061	F021918	KTMDKIVQTEMSPFYGLDHFYLGRYYKNGGRQRTITYEKKNRNFLLGKLYFENTITLDGEKFSQEKLDTRSTPYTMVWFSQPVRGLFPITRDITGQDEMIVSAWHTPGKELKIETNLPEVQSMKVTSAGPTKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGVTITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNARNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030965: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S8_0.2 metaT (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences