| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300030713 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0135150 | Gp0323843 | Ga0307922 |
| Sample Name | Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - TR-1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18344297 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → land → soil |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | N/A | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003861 | Metagenome / Metatranscriptome | 464 | Y |
| F008512 | Metagenome / Metatranscriptome | 332 | Y |
| F058155 | Metagenome / Metatranscriptome | 135 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307922_105131 | Not Available | 803 | Open in IMG/M |
| Ga0307922_107339 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa | 661 | Open in IMG/M |
| Ga0307922_111577 | Not Available | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307922_105131 | Ga0307922_1051311 | F008512 | LLLCISTVRTTLAGLNKIETAQRKTPKGGQKERTYREEHGNSAGSVKNFQAPAMLKTTPLDCEIKSNLREKRRDPWPRANAPSKAVADPEPVVKTRGKSQTCLDLVCRPVAQPPAEAS |
| Ga0307922_107339 | Ga0307922_1073391 | F003861 | TYTPDMKAVLVVLLVCSIAVALSLPLKPIWPKAFSSTIIVGRSRDPIPGFYRWFWDEGKQKDRVDGVVRFADELYFATRIFDHSKGIEYHVFYQESTAVCFTSNISTTLPKPNFSKLQYVGKALIDYEPVYHWYEEDKVRDLTFQVYDRQDNREVLRIDFDNGRRERAESWTFVELDVGTQGAEIFQVPTNIISQCTPFPNNMELPKYGF |
| Ga0307922_111577 | Ga0307922_1115772 | F058155 | FTLRLHFHHSPAVPFLTSPTLGSFSRGLPSLRVLPGADAHFVPPFGVFRLADLRFDA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |