| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029835 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321318 | Ga0307331 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ser2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 45295946 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 25 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 13 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 3 |
| All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022205 | Metatranscriptome | 215 | Y |
| F022444 | Metagenome / Metatranscriptome | 214 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F028541 | Metagenome / Metatranscriptome | 191 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F051952 | Metatranscriptome | 143 | N |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F056642 | Metagenome / Metatranscriptome | 137 | Y |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F060102 | Metagenome / Metatranscriptome | 133 | Y |
| F061655 | Metagenome / Metatranscriptome | 131 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070267 | Metagenome / Metatranscriptome | 123 | N |
| F074914 | Metagenome / Metatranscriptome | 119 | N |
| F078674 | Metagenome / Metatranscriptome | 116 | Y |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F081379 | Metagenome / Metatranscriptome | 114 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F101223 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307331_102119 | Not Available | 2102 | Open in IMG/M |
| Ga0307331_102844 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | 1850 | Open in IMG/M |
| Ga0307331_105836 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1301 | Open in IMG/M |
| Ga0307331_110689 | All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | 934 | Open in IMG/M |
| Ga0307331_110767 | Not Available | 930 | Open in IMG/M |
| Ga0307331_111484 | Not Available | 895 | Open in IMG/M |
| Ga0307331_111673 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 886 | Open in IMG/M |
| Ga0307331_111865 | Not Available | 879 | Open in IMG/M |
| Ga0307331_111891 | Not Available | 878 | Open in IMG/M |
| Ga0307331_113730 | Not Available | 806 | Open in IMG/M |
| Ga0307331_114090 | Not Available | 794 | Open in IMG/M |
| Ga0307331_117322 | Not Available | 699 | Open in IMG/M |
| Ga0307331_119608 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 648 | Open in IMG/M |
| Ga0307331_119796 | Not Available | 645 | Open in IMG/M |
| Ga0307331_120056 | Not Available | 639 | Open in IMG/M |
| Ga0307331_120802 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 625 | Open in IMG/M |
| Ga0307331_120875 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 623 | Open in IMG/M |
| Ga0307331_121009 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 621 | Open in IMG/M |
| Ga0307331_122592 | Not Available | 595 | Open in IMG/M |
| Ga0307331_123434 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 582 | Open in IMG/M |
| Ga0307331_123668 | Not Available | 579 | Open in IMG/M |
| Ga0307331_124181 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 571 | Open in IMG/M |
| Ga0307331_129110 | Not Available | 514 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307331_102119 | Ga0307331_1021192 | F082734 | AKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSNRLKLTQKEEKDAQTN |
| Ga0307331_102844 | Ga0307331_1028441 | F020914 | MAIYQKYGFAIDQILSEDQALPNATTGNSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSAKYLKLTYATSADESADKVEAFSVRR |
| Ga0307331_102844 | Ga0307331_1028443 | F067770 | MIEFKYNSPVFKLGKITRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKKANK |
| Ga0307331_105836 | Ga0307331_1058362 | F028541 | MNERERLKLINRLKTARTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA |
| Ga0307331_110689 | Ga0307331_1106892 | F074914 | MKISTLVKKSCAALHRIELLDPQECDREVFKMEIERARAIAYLVKTVSEIIAKNEMENRIAALEAAILQEKAS |
| Ga0307331_110767 | Ga0307331_1107671 | F062800 | HIFTTLPRRKRNRNKNRGKGAQLQSVTSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307331_111484 | Ga0307331_1114841 | F051952 | ACILFLSLEKMVQKMSQHEAYRAKYGPEVFTFRAVFSSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLARELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTSDTSKTDYLEFLFRNFNTNRVQLFPQKKPGEKLHSSSN |
| Ga0307331_111673 | Ga0307331_1116732 | F060102 | MSKKEKNKPQAPARPVQEEKANFISMMAKLDSRQRHRILAYLFWLIGIF |
| Ga0307331_111865 | Ga0307331_1118652 | F101223 | MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESEGENCCSCESENADTENPAKYIIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVVLDLQPEMDLKTFSSIKRNTLDYVIKQAQEAQAKEKAMKAD |
| Ga0307331_111891 | Ga0307331_1118912 | F078767 | MTNQITDITDEILTALREAGCRTVGILPEVLIFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKMKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR |
| Ga0307331_113730 | Ga0307331_1137301 | F025291 | ASKNKQPNQRRGGNKPSVKSKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCTDDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307331_114090 | Ga0307331_1140901 | F051952 | PRQTIAPDHFTSTALSESSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307331_117322 | Ga0307331_1173221 | F070165 | MKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307331_119608 | Ga0307331_1196081 | F056642 | NLLKINTMEKLCNCYAQSENQIKQEIYIPPVITVLEITLEKGFAASSASGTEDWGSLTW |
| Ga0307331_119796 | Ga0307331_1197961 | F059033 | MAITTSNLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVI |
| Ga0307331_120056 | Ga0307331_1200561 | F078674 | ENKKHMEALKKAIENRRAPLEVEGKAGGRIISLRVSEKMEQILEEQAQEWGMSISDTLRSILNFYFLPPLLLEAWENKVEELVAIDTECRGMDVTDNTAPTQAQRIEEVFIDSEEAEEYAQFITDLWEKSLKYFETLREEASTMNRIAGERLLKTAEALRKAGKKLEKTKVEV |
| Ga0307331_120802 | Ga0307331_1208021 | F081379 | MKLTTLGAADALGTPIPVFIPDTYRTRLVTTTTGVVTTPSFDSSEEARPYVKITATQEAAETDLYLYALGNVYEANHIQLHITVGNSDESYSIERKEVDLILTINLKTGFQTIAKIVEYIGFINNALGKTIISCSYDATKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPL |
| Ga0307331_120875 | Ga0307331_1208752 | F070267 | RILAEELGFRSTAVERVEMGSLLLEIGRIPAILHEIRRGVTLDEAFVSAWHPLLGLSILRKYDLPGYLEDILLHSHFPFLQRSLSPTAVIDIAELVVAKSFSRHGKLVIESPLPDGAIESTVGSSIREQFSAIGYGKYVEVRPPPDEQKARRE |
| Ga0307331_121009 | Ga0307331_1210091 | F022444 | VVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA |
| Ga0307331_122592 | Ga0307331_1225921 | F052619 | CDGINPSLVASFFSLSQLPASSDFTNLFDMYRITKIEIEWLPEYTELTDAALVSNAVNVRFNSTIDLTDSLAPAAVSDLLQYQQVLTTGITKPHKRTFVPCFLMGGLVPCQCWLPTSSPAERHYGIKTGVDPTGVAMRFRSRVKMWVECANVN |
| Ga0307331_123434 | Ga0307331_1234342 | F031111 | VRPKRGKKVTGMNNQVLFSIFKNKTRRKKEKSRFLTGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFS |
| Ga0307331_123668 | Ga0307331_1236681 | F022205 | RYRNKRFLLPYNKFHNATDQTSSITTNVFGFPLSRPLRPHAVEVRYAHSAPVGVRFRIYAGNGEEVYVSPALVAGPAPQVFKASLPANTDFAMYGPSQIVMDFAGTATWAIRLIMAHKENTA |
| Ga0307331_124181 | Ga0307331_1241811 | F070158 | QNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPP |
| Ga0307331_129110 | Ga0307331_1291101 | F070165 | TSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307331_129278 | Ga0307331_1292781 | F061655 | MIDTLKVMLNEYEITDDSEVRIQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISRVDTFKNIEPEEPFSSYYSL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |