NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029797

3300029797: Sediment microbial communities from Yellow Sea, Weihai, China - HGD.2



Overview

Basic Information
IMG/M Taxon OID3300029797 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133104 | Gp0282263 | Ga0243129
Sample NameSediment microbial communities from Yellow Sea, Weihai, China - HGD.2
Sequencing StatusPermanent Draft
Sequencing CenterShandong University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size333526101
Sequencing Scaffolds34
Novel Protein Genes37
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0281
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.1
Not Available11
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium3
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → Muricauda ochracea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas soli1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-152

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Yellow Sea, Weihai, China
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sediment → Sediment Microbial Communities From Yellow Sea, Weihai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationChina: Weihai
CoordinatesLat. (o)37.31Long. (o)122.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F011154Metagenome / Metatranscriptome294Y
F013318Metagenome / Metatranscriptome272Y
F015605Metagenome / Metatranscriptome253N
F019989Metagenome / Metatranscriptome226Y
F020363Metagenome / Metatranscriptome224Y
F030405Metagenome / Metatranscriptome185Y
F031503Metagenome / Metatranscriptome182Y
F035785Metagenome / Metatranscriptome171Y
F037652Metagenome / Metatranscriptome167N
F045728Metagenome / Metatranscriptome152Y
F046997Metagenome150N
F051165Metagenome / Metatranscriptome144Y
F059891Metagenome / Metatranscriptome133Y
F064746Metagenome / Metatranscriptome128N
F072820Metagenome / Metatranscriptome121Y
F074913Metagenome / Metatranscriptome119Y
F077264Metagenome / Metatranscriptome117Y
F078674Metagenome / Metatranscriptome116Y
F082057Metagenome113N
F096530Metagenome / Metatranscriptome104N
F103319Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243129_1000717All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix13872Open in IMG/M
Ga0243129_1003115All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7227Open in IMG/M
Ga0243129_1005411All Organisms → cellular organisms → Bacteria5491Open in IMG/M
Ga0243129_1010465All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3849Open in IMG/M
Ga0243129_1012316All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.3512Open in IMG/M
Ga0243129_1013239All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.3373Open in IMG/M
Ga0243129_1014727All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3172Open in IMG/M
Ga0243129_1023406All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0282405Open in IMG/M
Ga0243129_1037083All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1794Open in IMG/M
Ga0243129_1037888All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1768Open in IMG/M
Ga0243129_1038314All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.1754Open in IMG/M
Ga0243129_1048040Not Available1500Open in IMG/M
Ga0243129_1051180All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium1434Open in IMG/M
Ga0243129_1051304All Organisms → cellular organisms → Bacteria1432Open in IMG/M
Ga0243129_1053628Not Available1387Open in IMG/M
Ga0243129_1056138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium1343Open in IMG/M
Ga0243129_1058152All Organisms → Viruses → Predicted Viral1311Open in IMG/M
Ga0243129_1058917Not Available1298Open in IMG/M
Ga0243129_1067001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → Muricauda ochracea1181Open in IMG/M
Ga0243129_1072321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas soli1116Open in IMG/M
Ga0243129_1077199All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-151062Open in IMG/M
Ga0243129_1087163Not Available963Open in IMG/M
Ga0243129_1097174Not Available883Open in IMG/M
Ga0243129_1100498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium860Open in IMG/M
Ga0243129_1102718All Organisms → cellular organisms → Bacteria846Open in IMG/M
Ga0243129_1117286All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15763Open in IMG/M
Ga0243129_1121370Not Available743Open in IMG/M
Ga0243129_1122201All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes739Open in IMG/M
Ga0243129_1136769Not Available677Open in IMG/M
Ga0243129_1143617Not Available650Open in IMG/M
Ga0243129_1146403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium640Open in IMG/M
Ga0243129_1160002Not Available593Open in IMG/M
Ga0243129_1179545Not Available522Open in IMG/M
Ga0243129_1183856Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243129_1000717Ga0243129_100071720F051165MTTSFQKALAVLASVASVLAGIVTIASYLSGEDVALPPSLITPSSESQPIIIHARVVFIEKNMTYAIDYDKNLILLNESTIIV
Ga0243129_1000717Ga0243129_10007176F103319MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLAQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKIPR
Ga0243129_1003115Ga0243129_10031155F020363VARVFALVVRCRIMLLFVYSRVGKNRDTSRGSPAGAGADRTAGHLTVRFSQKILAVRKGNDIYRPVRLSFLLLLA
Ga0243129_1003115Ga0243129_10031157F020363VARVFALVVRCRVMMLIVYSRVGKNRDTRRGSPAGAGAGRTADHLAVLFSQKVLAVRSANCIYRPVSGSYLTSKLNGTA
Ga0243129_1005411Ga0243129_10054115F020363MWRWRRVAVARVFALVVRCRVMRLLLYSRVGKNRDTRRESPAGTGAGRTADHLTVLFSQKVLAVREANDIYRPVTASIFLLSTDF
Ga0243129_1010465Ga0243129_10104651F045728QLASAPRESSGQNERASMAVQAAPAPAGDSLLVSRFLPTRK
Ga0243129_1012316Ga0243129_10123161F064746MAKISLIIFLGICAVLACGCLDTAAEQKSVMIDGYTFTASLNDKWDTSYGEVSKYNPADLEDQFGIPGGAYDWTGFEDYGAFNYRSGEPSGSITKGGWANIFVLKPDEDLSDSSSIDILKHATYMIINPKDHRNAVIGGDLKEKEIEYNGRQAYFIEVEGELITPENYHTFINDNSLGAIAFFLDDDTVALIDVETTNDFGMSAWDVINSITVN
Ga0243129_1013239Ga0243129_10132394F064746MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTAALDDKWDNSSREVSKYKPADLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHATYLLINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSQGAIAFFLDDGKVCVIDAFTTNNYGMSAWDIIDSITVTS
Ga0243129_1014727Ga0243129_10147275F030405FCTRGAMQDYDVVLFILALAKTVTPGGGPRRESGQAAPLTT
Ga0243129_1023406Ga0243129_10234061F051165MTTSFQKALAIMASVASVLAGVVTIASYLSGEDVTLQPSSATAPSESRPIIIQARAVFVDDDKIYILDYDNNLIEWNESIIIV
Ga0243129_1037083Ga0243129_10370831F019989MNTTDINKNLTAPSVTIAPRNPARGVLTFVVTLTTFKDVRSYPCRSLESATKLAERFIAGVTKPRPAAQPETTPAPAAEPVAA
Ga0243129_1037888Ga0243129_10378881F074913VARVFALVVRCRVMRLLLYSRVGKNRDTRRESPAGAGAGRTAGHLAVFFSRRFSRYGAPMTYTDLLATVVHISNFI
Ga0243129_1038314Ga0243129_10383141F020363MWRWRRVAVARVFALVVRCRIMLLLVYSRVGKNRDTRRGSPAGAGAGRTADHFTVLFSQKILAVRKANDIYRPVRASFYSQKFFNISFYVA
Ga0243129_1048040Ga0243129_10480401F000388MKVIKVTKEYFETDDEKVYFFEPLEKEISVDDMQKIVDANQKLVKEMKD
Ga0243129_1051180Ga0243129_10511801F059891MDAAGFLKLKRGYWVIESALHHALDVTLREDHSRVRYPKAAFVLSLFRRIVVSFAQVWVAHCRKLNPKSRVTTRKFQQRFSRADGGPSRLHALMFAKSPVPWLSPA
Ga0243129_1051304Ga0243129_10513041F078674KWYTVRKENKKQMETIKKAVENRKAPFEIEGKAGGRVISLRVSERMEQLLEKQAQEWGMSISDTLRGILNFYYLPPLLLEAWEKKVQALIDLDTEQMGKNRADLNAPTLAQRIEPVLVDSEEAEEYANFIHELWEKSLKYFETLREEAKTMNRIASKRLQDLLKALENANYYEEFVKKVEEVEP
Ga0243129_1051304Ga0243129_10513042F015605MIDTLKLMLNEYEITDNSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNADNWNLTLKPLPAGNRATGAFLQLSIPKNYYGSNFYSVGEEGTKAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETGGLPPTMRFEHRLLNKQK
Ga0243129_1053628Ga0243129_10536283F077264MALNKIWNLRADSAWIELVKIQANEAGCDNPGAYVRDLVRALANNPTIKKNIF
Ga0243129_1056138Ga0243129_10561383F030405TRGAMQDYDVVLFILALAKTVTPGGGPRREPGQVAPPTT
Ga0243129_1058152Ga0243129_10581521F077264LRADSAWIELVKIQANEAGCDNPGAYVRDLVRALANNPTIKKSIFDAMRGGV
Ga0243129_1058917Ga0243129_10589174F072820MKPLHQITVDAVTIRGIIDYLEKSVEPVGLHEIAMTQHVSNATALRLCRILEKASIAEHPVVTRVVMGASQEVPQLAWQLTKPFFLGGCVYNAERLAGGMA
Ga0243129_1067001Ga0243129_10670011F045728MQLASAPRESSGQNEIASMAVQAAPAPAGDSLLVSRFLPTR
Ga0243129_1072321Ga0243129_10723211F072820VKPSHQITADAVTIRGIIDYLEKSVEPVGLHELAMTQHISNATALRLCRILERAAIIEHPVVTRVVMGASQEVPQLAWRLTKTFFLGGCVYNAEELAGGMA
Ga0243129_1077199Ga0243129_10771992F037652DRHLNMERIPYTNFWSEAPEGQRRAWRPTDEVRRRLMRLWTIQALLLMAIVAVGALLANESKRMPPIFAKLPNGMVFETAIGRLQMDRLARTELVNDVLPLLYYQEGSFNYLGAIRQNVKPQLLGRFQAEMQNASKQTNSTVCLNVVETFEVLNAPAKGFDAVTKGVLSKRSSKDSASAPIYIRTRWLLSADRYLLSRVEEIRPGDYYELFLAEKQRLKKLSKPELEREMGVRKNQEIPLPKRNNLY
Ga0243129_1087163Ga0243129_10871632F074913DRTKCVLTFGGMWRWRRVAVARVFALVVRCRVMMLFVNSRVGKNRDTKREPPAGAGAGRGASHKTASLFTQLSRHGAPMTYTDLLAVGYLLPSI
Ga0243129_1097174Ga0243129_10971742F096530MSSSENGLVSFPPGITTCCLGRNGILTTVGIYVDSFDHKIILTPQHSRRQMARCTIELPNDFRVMLGLILELLKNSPGTREALQQEFAETGAPPAQP
Ga0243129_1100498Ga0243129_11004982F074913SWRRVAVARVFALVVRCRDVMLFVYSRVGKNRDARRGSPAGAGAACAASHITHILSQKILAAQKPMTYTDLLWAMLID
Ga0243129_1102718Ga0243129_11027182F013318NLVSAVVTNFVPVFYTNVVQVPVTNLVARPEAEAVIQAAGSVVNTFAPGIGSILALALAGLYHGYRQVRNRKVNEALVQGVETARAVLTTTPQGQAADAQFVKWLMEHQKEAGVFTTVSGLVEQLSDNPAAKMTAQEIAERVQRAQQQRTAGQAAGA
Ga0243129_1117286Ga0243129_11172862F046997MTSAYRTLSLIGCSLTLGVGVAAGPITAADVRTERDAIPRYLAQEKAEAIEMFGASQQALLRDRAMSGISRIENKLQSGPTNAVVEPNAPLLPLGEKKLVLHADVLKKSYTAYRPSNGKPLYVNTKGRRAPETYVAPEFLRTGANILIPKGTVRVPVCLGGDELEDYLQLRCDRKLQTGDYWKELHARKLDDEQLARLRYYDYLDTHAALRSVPVYQCTELRSRTH
Ga0243129_1121370Ga0243129_11213701F082057MEALFHPGACWLVIVDNRCTVLRIQPGGDRCQFPGESGEHSLGRIQEWLSPVWTATMLKCVQCLKRIAQQLKPGAKLEICDQCRNTVGSPRPMSYWLGYLDDQPEIVRVVEDGIHRLGEAQTYPLAHVREWLMPIWGPDMVYCPGCCQAKPRKDIVFLFHRSPKGVCKDCSEHFEFEHPEVSVRA
Ga0243129_1122201Ga0243129_11222013F045728MSLASVPRESSGQNVIPLMAAQAAPAPAGDSLLVSRFLPT
Ga0243129_1136769Ga0243129_11367691F035785MIRIEADKALKMTETEMLDVVFEASENSLIELNVVDPDSQAGDNDGVYLEIIKLDDEESVVRDRWPNQDGDRRIVSTDDIYAIYRALVDQVEEVA
Ga0243129_1143617Ga0243129_11436171F030405AMQVCDVVLYIVALAKTVTPGGGPRREPGQAAPPTT
Ga0243129_1146403Ga0243129_11464031F045728MSLASAPRQYCGQNVRTSMAVQAAPAPAGDPLLVSRFLPTREHTNQH
Ga0243129_1160002Ga0243129_11600021F019989MNTTNQNNNVTAAPSVTIAPRNPAKGVLNFVVTLTTHKDVRSYPCRSMESAIKLAERFIAGVTKPARPSTQEAETNPHQYDGPPRTAEQVAA
Ga0243129_1179545Ga0243129_11795451F011154TRSDEKPLRVGLRRPGQFRAWANRSYPEGIRLLLCISTGGRLGRSPEGDRPNERRRKAGQSERPNREGHAASAGPVKTFREVGGVKNDTADLWTKGNLRVKRRDPWHRANAPSKAAADPALSGQDADQKTQTCLDLVRKPVAQPPAQAS
Ga0243129_1183856Ga0243129_11838561F031503MNRQEMMELFRATANINTPEGLQAYRAFAAALTTPILKKLELESIMRQLFSVEILGPGAQAMYPVAEDFEIPVWVLPGLSYVAQNFVEGIGEEVYVPTFSISTAADWKITYARDSRIDIAQRAATKAAMELANYEEECGWRVIMPAATSAFSG
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