| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029670 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321338 | Ga0307351 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Phe2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 59460968 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 24 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F003987 | Metagenome / Metatranscriptome | 458 | Y |
| F015738 | Metagenome / Metatranscriptome | 252 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022205 | Metatranscriptome | 215 | Y |
| F029768 | Metagenome / Metatranscriptome | 187 | N |
| F033383 | Metagenome / Metatranscriptome | 177 | Y |
| F034230 | Metagenome / Metatranscriptome | 175 | Y |
| F042353 | Metagenome / Metatranscriptome | 158 | Y |
| F054061 | Metagenome / Metatranscriptome | 140 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F093490 | Metagenome / Metatranscriptome | 106 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307351_102772 | All Organisms → Viruses → Predicted Viral | 2521 | Open in IMG/M |
| Ga0307351_105697 | Not Available | 1698 | Open in IMG/M |
| Ga0307351_105867 | All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | 1668 | Open in IMG/M |
| Ga0307351_107891 | Not Available | 1396 | Open in IMG/M |
| Ga0307351_108881 | Not Available | 1301 | Open in IMG/M |
| Ga0307351_111670 | Not Available | 1090 | Open in IMG/M |
| Ga0307351_113693 | Not Available | 981 | Open in IMG/M |
| Ga0307351_114467 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 947 | Open in IMG/M |
| Ga0307351_118588 | Not Available | 801 | Open in IMG/M |
| Ga0307351_121993 | Not Available | 713 | Open in IMG/M |
| Ga0307351_122354 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 705 | Open in IMG/M |
| Ga0307351_124505 | Not Available | 660 | Open in IMG/M |
| Ga0307351_124527 | Not Available | 660 | Open in IMG/M |
| Ga0307351_126823 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 622 | Open in IMG/M |
| Ga0307351_128243 | Not Available | 601 | Open in IMG/M |
| Ga0307351_128791 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 593 | Open in IMG/M |
| Ga0307351_129007 | Not Available | 589 | Open in IMG/M |
| Ga0307351_134006 | Not Available | 530 | Open in IMG/M |
| Ga0307351_134407 | Not Available | 525 | Open in IMG/M |
| Ga0307351_136683 | Not Available | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307351_102772 | Ga0307351_1027723 | F094051 | MGNTGILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGDGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGFMKES |
| Ga0307351_105697 | Ga0307351_1056972 | F070167 | MSWLGNALFGQSRLKGYNMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGILLERLRHCFSEHSLQLVF |
| Ga0307351_105867 | Ga0307351_1058675 | F003987 | MIPALPCGTFSDSNTPAGAFYVAAFEDGDQTHHVGEYRIETVLRALEALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQMGCIAVVPVGVE |
| Ga0307351_107616 | Ga0307351_1076163 | F020914 | MAIYQKYGFAIDQILSEDQALPNAQPGDSTNIIELQTIADDGLHIVVCAASTTVELASNATLEIRPTIGATDGTVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSAR |
| Ga0307351_107891 | Ga0307351_1078912 | F078767 | MTNQITDITDEILIALQKAGCKTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGVLTQLLDISIFIITQNGINKMKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR |
| Ga0307351_108881 | Ga0307351_1088812 | F033383 | DIHAIHSQLGLKAYHDNKPKVMFMHGEPLSSVGNGVSMKAIVDLAPMVDCFIAMRKDEMPIWQSIKRTYLVDKGVDLEVYKPLDGITEKLSGEPSILYVENWRGQRNPLYLCVAMEQVWKKYPNARLHLYNCNDKRMQETFLALSKNNKWWPFLRSLQGGVNGGEEMNLLYNRADIVVSCLYPLYARSVEAFGAGKAFIGTGYREHDYPWQCDLHPDSIAKAVINCWENYDQINYREWAEKYHNAETSTKQCLEIYGRYI |
| Ga0307351_111670 | Ga0307351_1116701 | F062800 | QQMNQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307351_113693 | Ga0307351_1136931 | F070165 | MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307351_114467 | Ga0307351_1144672 | F070158 | MADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY |
| Ga0307351_117875 | Ga0307351_1178751 | F029768 | GITKKPTLANLHNCIHYGKIFVCKKELKMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIEEKQREGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK |
| Ga0307351_118588 | Ga0307351_1185881 | F093490 | MKTFIAFSIIFLTATMAFATPFLVSDPQSGVTSYQITGWSETNVTAQADGSLRMDVGSAVQGTTYNLTIAACNVWGCSTTV |
| Ga0307351_121993 | Ga0307351_1219931 | F062800 | GLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307351_122354 | Ga0307351_1223542 | F015738 | MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGCAWCLHFDRPIDHRLVKEDRPACIEERNGCAGCPESTYRVRRGPDR |
| Ga0307351_124505 | Ga0307351_1245051 | F070165 | MRRRGRNARRSTQTLTHTVVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307351_124527 | Ga0307351_1245273 | F000388 | MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKEMKDGS |
| Ga0307351_126823 | Ga0307351_1268232 | F034230 | SGFILSGTAAPAQGDASGPETNKLRVTVGPFFTQESDKKIPLESAASRVIRKGKRVNITVTVENYGKEKSEPVRLRYMETDGKAAEPRLYRVESIEPGKKWQRTFMARWETSGRKSVTATLVTPEDKPLVDATGKPRPDTSHTGSVSLTVKRM |
| Ga0307351_128243 | Ga0307351_1282431 | F042353 | PLSLAAREELERIVKDDLEHAAVSSAMVLVEEGGRIVINELVLRLEDGRMVTLMPLDVSAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELDDLVRVWHPEPDTVEEARL |
| Ga0307351_128243 | Ga0307351_1282432 | F054061 | LCVGDNMDEMFEIIKAGAPDGPPEQALYRIQHTYSDGSGGRLNVDWTGLHRLHDLIHDRIAMEGCVCETCDTKGCHRPATWEIEC |
| Ga0307351_128791 | Ga0307351_1287911 | F077342 | MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGSIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF |
| Ga0307351_129007 | Ga0307351_1290071 | F099361 | NIKNTDSISILIANSGNQKIYHPVSEFKADILADVEADETLQDIIIQGVLSNVEADAAFQDIIIQGVLDNVAAPILATESTIIKNSNDPTIAIEITKNTFADTLSENVGNWIIDFGMTTLAFDTITKVSATEMMIKTTGTAEVGTIRILALKDCFDAPIVDSNILEIEVQELEEPEE |
| Ga0307351_133414 | Ga0307351_1334141 | F020914 | MAIYQKYGFAIDQILSEDQALPNATSEDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307351_134006 | Ga0307351_1340061 | F022205 | LRTMRNRNNKRFLLPYNKFFTATTGTSTVTANVMGLPLNRPCRPHAIEVRYAHSAPAGVRFKIYAGNSEEVYVSPALVAGQAPQVFRATLPANTDFALYDPAATIMDFAGSATWAIRLIMAHKENMA |
| Ga0307351_134407 | Ga0307351_1344071 | F022205 | FLLPYNKFHNATEQSTTLTANALGLPLSRPTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA |
| Ga0307351_136683 | Ga0307351_1366831 | F022205 | NVFGFPLSRPLRPHAVEVRYAHSAPVGVRFRIYAGNGEEVYVSPALVAGPAPQVFRASLPANTDFAMYGPSQIVMDFAGASTWAVRLTMAHKENSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |