| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029663 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321322 | Ga0307335 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asp2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 50708945 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 26 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 2 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015605 | Metagenome / Metatranscriptome | 253 | N |
| F015885 | Metagenome / Metatranscriptome | 251 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022444 | Metagenome / Metatranscriptome | 214 | N |
| F029768 | Metagenome / Metatranscriptome | 187 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F044576 | Metagenome / Metatranscriptome | 154 | Y |
| F045183 | Metagenome / Metatranscriptome | 153 | N |
| F049017 | Metagenome / Metatranscriptome | 147 | N |
| F051952 | Metatranscriptome | 143 | N |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F055836 | Metagenome / Metatranscriptome | 138 | Y |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F081379 | Metagenome / Metatranscriptome | 114 | N |
| F086646 | Metagenome / Metatranscriptome | 110 | Y |
| F088944 | Metagenome / Metatranscriptome | 109 | N |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F101223 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307335_104612 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1500 | Open in IMG/M |
| Ga0307335_106421 | All Organisms → cellular organisms → Bacteria | 1275 | Open in IMG/M |
| Ga0307335_107244 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1198 | Open in IMG/M |
| Ga0307335_108441 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1104 | Open in IMG/M |
| Ga0307335_108768 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1083 | Open in IMG/M |
| Ga0307335_110937 | Not Available | 957 | Open in IMG/M |
| Ga0307335_111396 | Not Available | 936 | Open in IMG/M |
| Ga0307335_111571 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 927 | Open in IMG/M |
| Ga0307335_113357 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 855 | Open in IMG/M |
| Ga0307335_113964 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 833 | Open in IMG/M |
| Ga0307335_114032 | Not Available | 831 | Open in IMG/M |
| Ga0307335_116107 | Not Available | 766 | Open in IMG/M |
| Ga0307335_116309 | Not Available | 760 | Open in IMG/M |
| Ga0307335_116871 | Not Available | 744 | Open in IMG/M |
| Ga0307335_117511 | Not Available | 729 | Open in IMG/M |
| Ga0307335_117797 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 722 | Open in IMG/M |
| Ga0307335_118495 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 705 | Open in IMG/M |
| Ga0307335_119010 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 693 | Open in IMG/M |
| Ga0307335_119352 | Not Available | 685 | Open in IMG/M |
| Ga0307335_120850 | Not Available | 656 | Open in IMG/M |
| Ga0307335_121866 | Not Available | 637 | Open in IMG/M |
| Ga0307335_124665 | Not Available | 591 | Open in IMG/M |
| Ga0307335_128755 | Not Available | 540 | Open in IMG/M |
| Ga0307335_129002 | All Organisms → cellular organisms → Bacteria | 537 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307335_104612 | Ga0307335_1046122 | F077342 | MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGSIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEQQRREILNPKRIF |
| Ga0307335_106421 | Ga0307335_1064211 | F044576 | EEALLVEDLHTGELVVERANGEKWVLDAKKGWCPWGYEFEGRRVRLRFGEVTSVLVNDRGERFEFWTDKQIE |
| Ga0307335_107244 | Ga0307335_1072442 | F068879 | RDNRVTKEEGLVAGATACPGYRRGLPPGVTVFANARINK |
| Ga0307335_108441 | Ga0307335_1084411 | F055836 | WIFPLRRMQWEYGNNMGAQGRSRPTSPVRSRSQRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLRGRVFSVVETVERVTEKHGLQKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAH |
| Ga0307335_108768 | Ga0307335_1087683 | F093911 | DFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI |
| Ga0307335_110937 | Ga0307335_1109371 | F051952 | MPKNPRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307335_111396 | Ga0307335_1113961 | F078767 | TNQITDITDEILAALREAGCRTVGILPEVLIFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR |
| Ga0307335_111571 | Ga0307335_1115711 | F088944 | RTPMKNEEFEKELFEIYLDSLEDRFDFDEDKQKIESLTTEAGEANIIVEQNNIEPIETQVLGTIRQLSHSGKLINYVPVALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFLLYTEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRLRDQDANALDLTPMIDLLVKKEGLAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGGILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIKI |
| Ga0307335_113132 | Ga0307335_1131322 | F020914 | MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307335_113357 | Ga0307335_1133571 | F045183 | MKNKETLKRLSDRLLRPALRESEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLFLFHANYTGAAEEWLLYFFGAGAVVGVLSVHKAVMRFLYRIAQFEKPVEGQDRTIMITA |
| Ga0307335_113964 | Ga0307335_1139641 | F081379 | PSFDSSEEARPYVKITATQEAAETDLYLYALGNVYEANHIQLHITVGNSDESYSIERKEVDLILTINLKTGFQTIAKIVGYIGLINNALGKTIISCSFDASKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY |
| Ga0307335_114032 | Ga0307335_1140321 | F070165 | MRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDINVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307335_116107 | Ga0307335_1161071 | F059033 | MPITTANLQTLAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTTNKQMNIFKWIFSAYFTLIIPS |
| Ga0307335_116309 | Ga0307335_1163091 | F070165 | MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMLDLNVSVKVGCLTTFEYKYLTGAHGDLRYEPAVIEVV |
| Ga0307335_116871 | Ga0307335_1168711 | F052619 | EDASFNIVCDGINPTLSAFIFMLSQVPNSTDFTNLFDMYCLKKIEIDWVPEYTELTDAAPLSNAVNVRVNSAIDLTDNLAPASVNEVLQFQQLVSTGITKPHKRSWQPTFLMGGLVPCSCWLPTSSSTERHYGLKIGVPPTGVAMTLRAKVKYFVECANVN |
| Ga0307335_117511 | Ga0307335_1175111 | F101223 | MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMIGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSLIKRNTLDYVIKQAQEAQAKEKAMK |
| Ga0307335_117797 | Ga0307335_1177972 | F031111 | KKEKSRFLVGKKRYISTIPQNSYYQIIVNIPAAYNFSCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL |
| Ga0307335_118495 | Ga0307335_1184951 | F094051 | QAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVY |
| Ga0307335_119010 | Ga0307335_1190101 | F022444 | VIQKLKGNSDYHVVEVVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA |
| Ga0307335_119352 | Ga0307335_1193522 | F015885 | MTVCKEIVDCVLANCSKLLPGIKDRAYFINFDCVDKDTSTFDVDNALLLTQLVLKTTSPPCYAYCVEGYNFSNEHTVAMVKGRYQKTWDHNFVFRIFDNTPEVKEWIDNAIGSRFMVIIENNYNKNDGVEAEGRTVFEVLGWDFGLEINAAERDVNSDETLGGWVLTAGCSDTMKESLPPLAYFVGGTIAT |
| Ga0307335_120090 | Ga0307335_1200901 | F029768 | HYGKIIVCKKELKMLDSVLREQEKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK |
| Ga0307335_120850 | Ga0307335_1208501 | F062800 | RGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307335_121866 | Ga0307335_1218661 | F049017 | SSITVTSNDISAITMSDTTKFREFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDATLNTAIVGGSATFIDYN |
| Ga0307335_124665 | Ga0307335_1246652 | F036251 | MSAKDRQTVLFGDTGVVAPIDTTDRVRLSDGAVFVAQRIEIRPSNIYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFLTMV |
| Ga0307335_128755 | Ga0307335_1287552 | F086646 | VDIEDDEVLPCYDTEHELRISQGIAFKSVKILTGKTQETYPYWEVFLDMSYSNSTELRDVIFKDLPGESGIYMLNIWFDYDGEDINFGDDFKKLCEYRHKWDDGWICSKCGVRRADWIESDIKTTTREESY |
| Ga0307335_129002 | Ga0307335_1290021 | F015605 | VEYPLFQTPSHGSHYGSKAYLNAENWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLSKVEGELKEKGVHTPLIEADMSRVDTFKNIEPEEPFSSYYTLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETRGLPPTMRFEHRLLNKQKIQNVYGMS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |