Sample 3300029659

3300029659: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300029659 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128792 \| Gp0224288 \| Ga0206094
Sample Name	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	44030953
Sequencing Scaffolds	57
Novel Protein Genes	61
Associated Families	46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1
All Organisms → cellular organisms → Eukaryota	10
Not Available	36
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Coluteocarpeae → Noccaea → Noccaea caerulescens	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.305	Long. (^o)	-116.2547	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000025	Metagenome / Metatranscriptome	5578	Y
F000206	Metagenome / Metatranscriptome	1598	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000914	Metagenome / Metatranscriptome	836	Y
F001537	Metagenome / Metatranscriptome	674	Y
F001623	Metagenome / Metatranscriptome	661	Y
F001633	Metagenome / Metatranscriptome	660	Y
F001679	Metagenome / Metatranscriptome	653	Y
F002776	Metagenome / Metatranscriptome	530	Y
F002920	Metagenome / Metatranscriptome	520	Y
F003347	Metagenome / Metatranscriptome	492	Y
F003395	Metagenome / Metatranscriptome	489	Y
F004108	Metagenome / Metatranscriptome	452	Y
F005971	Metagenome / Metatranscriptome	384	Y
F008470	Metagenome / Metatranscriptome	332	Y
F009727	Metagenome / Metatranscriptome	313	Y
F010666	Metagenome / Metatranscriptome	300	Y
F010890	Metagenome / Metatranscriptome	297	Y
F016908	Metagenome / Metatranscriptome	243	Y
F019268	Metagenome / Metatranscriptome	230	Y
F020480	Metagenome / Metatranscriptome	223	N
F024036	Metagenome / Metatranscriptome	207	Y
F026174	Metagenome / Metatranscriptome	198	Y
F030307	Metagenome / Metatranscriptome	185	Y
F032070	Metagenome / Metatranscriptome	181	Y
F033437	Metagenome / Metatranscriptome	177	Y
F035589	Metagenome / Metatranscriptome	171	Y
F042748	Metagenome / Metatranscriptome	157	Y
F049370	Metagenome / Metatranscriptome	146	N
F053699	Metagenome / Metatranscriptome	140	N
F057024	Metagenome / Metatranscriptome	136	Y
F063225	Metagenome / Metatranscriptome	129	Y
F064274	Metagenome / Metatranscriptome	128	Y
F066797	Metagenome / Metatranscriptome	126	Y
F067294	Metagenome / Metatranscriptome	125	Y
F069542	Metagenome / Metatranscriptome	123	Y
F070259	Metagenome / Metatranscriptome	123	Y
F070907	Metagenome / Metatranscriptome	122	Y
F073141	Metagenome / Metatranscriptome	120	Y
F078310	Metagenome / Metatranscriptome	116	N
F085198	Metagenome / Metatranscriptome	111	N
F086414	Metagenome / Metatranscriptome	110	Y
F100141	Metagenome / Metatranscriptome	102	Y
F102215	Metagenome / Metatranscriptome	101	N
F102608	Metagenome / Metatranscriptome	101	Y
F104572	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0206094_100659	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	3008	Open in IMG/M
Ga0206094_101799	All Organisms → cellular organisms → Eukaryota	1708	Open in IMG/M
Ga0206094_103319	Not Available	1265	Open in IMG/M
Ga0206094_103472	Not Available	1242	Open in IMG/M
Ga0206094_104739	Not Available	1074	Open in IMG/M
Ga0206094_104803	All Organisms → cellular organisms → Eukaryota	1068	Open in IMG/M
Ga0206094_108032	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	847	Open in IMG/M
Ga0206094_108832	Not Available	813	Open in IMG/M
Ga0206094_109058	Not Available	804	Open in IMG/M
Ga0206094_109666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	781	Open in IMG/M
Ga0206094_110017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	768	Open in IMG/M
Ga0206094_110019	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	768	Open in IMG/M
Ga0206094_111071	Not Available	734	Open in IMG/M
Ga0206094_111153	Not Available	731	Open in IMG/M
Ga0206094_111570	Not Available	719	Open in IMG/M
Ga0206094_112094	Not Available	704	Open in IMG/M
Ga0206094_112126	Not Available	703	Open in IMG/M
Ga0206094_113416	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	672	Open in IMG/M
Ga0206094_113696	Not Available	666	Open in IMG/M
Ga0206094_115310	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	632	Open in IMG/M
Ga0206094_115945	Not Available	621	Open in IMG/M
Ga0206094_116177	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	617	Open in IMG/M
Ga0206094_116715	Not Available	607	Open in IMG/M
Ga0206094_116990	Not Available	603	Open in IMG/M
Ga0206094_117087	Not Available	601	Open in IMG/M
Ga0206094_117113	All Organisms → cellular organisms → Eukaryota	600	Open in IMG/M
Ga0206094_117151	All Organisms → cellular organisms → Eukaryota	599	Open in IMG/M
Ga0206094_117528	All Organisms → cellular organisms → Eukaryota	594	Open in IMG/M
Ga0206094_117645	Not Available	592	Open in IMG/M
Ga0206094_117778	Not Available	590	Open in IMG/M
Ga0206094_118052	Not Available	586	Open in IMG/M
Ga0206094_118156	Not Available	584	Open in IMG/M
Ga0206094_118355	All Organisms → cellular organisms → Eukaryota	581	Open in IMG/M
Ga0206094_118397	Not Available	581	Open in IMG/M
Ga0206094_118470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	580	Open in IMG/M
Ga0206094_118773	Not Available	575	Open in IMG/M
Ga0206094_119134	Not Available	570	Open in IMG/M
Ga0206094_119465	All Organisms → cellular organisms → Eukaryota	566	Open in IMG/M
Ga0206094_119536	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Coluteocarpeae → Noccaea → Noccaea caerulescens	565	Open in IMG/M
Ga0206094_119915	Not Available	560	Open in IMG/M
Ga0206094_120035	Not Available	559	Open in IMG/M
Ga0206094_120325	Not Available	555	Open in IMG/M
Ga0206094_120781	All Organisms → cellular organisms → Eukaryota	549	Open in IMG/M
Ga0206094_120895	Not Available	548	Open in IMG/M
Ga0206094_121005	Not Available	547	Open in IMG/M
Ga0206094_121185	Not Available	545	Open in IMG/M
Ga0206094_121342	Not Available	543	Open in IMG/M
Ga0206094_121626	All Organisms → cellular organisms → Eukaryota	539	Open in IMG/M
Ga0206094_121857	Not Available	537	Open in IMG/M
Ga0206094_121929	Not Available	536	Open in IMG/M
Ga0206094_122072	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	534	Open in IMG/M
Ga0206094_122081	Not Available	534	Open in IMG/M
Ga0206094_122169	All Organisms → cellular organisms → Eukaryota	533	Open in IMG/M
Ga0206094_122296	Not Available	532	Open in IMG/M
Ga0206094_123248	Not Available	522	Open in IMG/M
Ga0206094_123373	Not Available	521	Open in IMG/M
Ga0206094_123948	Not Available	515	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206094_100659	Ga0206094_1006593	F032070	MAFKATPQMLGVPDFGLIHIDPVETAKAFQAYLDTASRLTGVSLDDIDRRVMKAPDDPEKVTLFELITLGMKLFDAVVWLHAKRPVSHPLMIDPTITTETIASTHDIARSVFYVYFMLLTQARYPAATPTADQARIPNFLKTIMGMADGQHVYMSRICSFAPQKFDPAWVRHVSFSNFGQEVLSRFGLGVAGYRMFGPFGLYDHRSDMPANLAPAFAFARSVSKAPASWSVHPLTRDPNILTARGNLNKNLGNLILDAFTDAQIDEMVNAKILFKKPDREASHRNYLTWTANDDITGSGRIFPA
Ga0206094_101799	Ga0206094_1017991	F070259	MKMESLVIVNQYVTVNDISNFAHTAHHARRVVLFGNLIGDAMVII
Ga0206094_103319	Ga0206094_1033191	F063225	DCGRLRGVISLAVGQKDQLVNITVSVWADPVNPALFLRNGTAVPAPHFVTLSDSKGFFSINTLSFDAGVSTRAAGQAKRRFYFSLTGQFTDRTTGVDVVTTLLPLWWNYELTNTQWSGTGNLTNTNNSPSFYFYMTPPFTTADSLIRVILSWGTLISNPANSLPDVDLVIAGPVDQSSIAVFGTGIVNFQNKDLHSSSRTLPYAKLVTDSAQGYGPEVMDFYGVPGALQLGFSSTYAAGAAANAYEIWVDRPNSSPNQDSAFTFLYDTNAFIVVYQNDGTTGGNKQVLFDARTGIPYAYGFYNTDQWNKVPDTATLWHIIDLSLAAGGVLFNGFPGENNTQDTTGTPGAKYGFDAQFFEKTKSIPCGHTASRGASPAYCPATLTYPQSKKK
Ga0206094_103472	Ga0206094_1034722	F066797	LNLHQIISSADLGGSSNYSKETFLNNNSTLKTEVAKVFMTTEVAHELVDPNPKDYEK
Ga0206094_104739	Ga0206094_1047391	F042748	KMTRSNELRAVYGLVLATIALAVVVCVSVNQLEARTAMEVEMFQQPADATMLKTDHYVPPNPLEDPELRPEYDVDTAKETDKSKADFKQASDEVKKGFKIMKDVMEKLTKQDEARDKLMDEAIAISDRIHSVRHLLINVKAETNGIQVKEDGNWIFTNPFGSDADPPNQKLAPFKSQIKDLTAKTEAINKDLKDLIVRSHAARNDAITLDSDLYDEVHKAKVIAKDAVQELHHHFDRVEMFNHKDFDIVHRVDAKLNDGFRITRHRLNGMINLANEMSARQPNEVSEVTALATDLLIVNAESQERLQRMSDVIDDIEFERKRRGSK
Ga0206094_104803	Ga0206094_1048031	F067294	DMGRAFASTDVYGWSDPYPAVQHFDKTKSIEDLRSPLIQSFPASAAPTTTSVPPTLPDYIDPCYHFACKTQAADLFQSVLSSMKRSGVDVEPKPEKFRMRCKSYPNGALLCFVIRIYRDAKKSESVVECQRRSGCVLRFSDLYKSLRKQVDPNSRDTSAAAPVRRDTEMNNEHAQETTQCLLLMASSHFVDVKSKAVEALASLSGQDRNVQDLLIKNGSVSLLLDGCAKFDKVEDVHRPSLTALANLSDGRADVCRAIAEKSLRCLSEKYTSPQENCPQVVRECARVLTNIGLNLKDTMRDAGAECVNTAVKNLSRSNDPLALQCARELEDCIGMST
Ga0206094_108032	Ga0206094_1080321	F002920	LAHRGRDLAQQLKDRTEVDNFLDSSETLLDNIKKDEYVKLLSDQAGIISADLSYVDMEGKTVVDTDILSKLQSVFLPTIAETLKYIPMPRIESRDSNREFWLDNITLCAYDIIPENIHFHLESDSDLSLKDLEAKRSHTHLVVTLDKFRTELKNMNFYYNKKTFPALTDSGVVTFRIGGAGARLKMVFTVEQHTGDKHPRLTEGYADFHIYHMDINFDKSTLTHDVLLPMMTNMWKLQIQNEIERAVEKNLTNVVQKLSEQLTTTLGEVNRPFLSGLETARK
Ga0206094_108832	Ga0206094_1088321	F000344	MRPKHPHAAESGVGKHTARESERVQACAAGKEHVT
Ga0206094_109058	Ga0206094_1090581	F008470	MEALLDELLRNINDIIAGVPLKWEDVREGDRKTVLTCALHCCLNGPVGVNKETTFPVVGVAQINQLVKVSNSSWRGFCEGVAKYLVNKKVVVECNSMRLLNTYWPLKAWPQVQVVM
Ga0206094_109666	Ga0206094_1096661	F001633	TRLDALAFAGGVLPDATLRGMRMSRSHGGTVLTVTGRDLSSEASAPGSDTPCRERRAGRGADTPAIFTFSRRPLYRGDGISFWLIVGPALRV
Ga0206094_110017	Ga0206094_1100171	F001679	KGVWGMPWRHEALKGVADCDKPGGMVKRVLIPGFPN
Ga0206094_110019	Ga0206094_1100191	F008470	MEALLDELIKDIKSIIAGIPLKWEEIKEENKRPVLICALHCCLNGPVGVNKGTTFPLLGDAQINALVKVSNSSWRGFCGVVAKFLVDRNVKVECNAMRLLATYWPLQEWPKKLI
Ga0206094_111071	Ga0206094_1110711	F033437	TLRGMRMFRSHGGTVLTVAGPELSSEASSPGSDAPCRERLAGRGADTPAIFLSRVGTVTAGTAPAFGWPLALRYGSDLLPLRLHSHLQ
Ga0206094_111153	Ga0206094_1111531	F073141	MATSDEKKVTDLAFNQFIEELYDVSKISDEEIKLWNESYSYKGFDRKKTLKDLMNKVDDVKIVQQIIMICGLLGPQRASLVRLNNGRVINTYGIPASGKKGSDGVSCQRITAATADLCAYFLKKVNIPKRLNIPCPGWLQFPSAGSIVLPDDLREMHIEFSRRFSTVIGGVFNEQIYAQMMNNAYLDPKLRLFDNIGDAITQTASSGLVPIPAPTFNPGVGNVGRTKTTDTE
Ga0206094_111570	Ga0206094_1115701	F030307	AKSSFYSVSSMKSVLVLLVLITFVQGLLAANPLNAAQLPKVAPAAQAKQPQSPNTPHLMRFQRIRKLNMEHCPCLDLQYVPPKYIVPDFYPDPPKQCPVGQIPVSYLAPPSCSVDNQDQPTAYACWSCGRQYMTPEYYAQHLATCPHWHTAPVVEVGYKASCSQCGRVFYSPVTYTAHLPDCNGDDL
Ga0206094_112094	Ga0206094_1120941	F004108	PCSLLKMSVRIALLAIAVTAAFAQTQLCLPTAWQAFETIYTNSPNPQQENMAMMRYRDMTQNAERFDFMMFHNTQQREAFQIFDFTNGISYFVEEQNGQAISCTLQKATGPMEQECLFANATKVGSGYVGSSYAVDFWHEQGIDMANAPFFLDATLQSNTPQPVPVQVRQVFFGSQPNMPPFFALTQYWNYQAGPVNSTLFVTPSLCHGLDISEGVAKSPLAFLRA
Ga0206094_112126	Ga0206094_1121261	F008470	METLLAELIKNIDAIVAGVPLRWEDVKKENQRAVLICALHCCLNGPVGVNKTTTFPLIGEAQVNLLVKTSNSSWRGFCMSVAEWLRDNNVKTDCNALRQLGTFWPIKEWVKKSQVVL
Ga0206094_112904	Ga0206094_1129041	F009727	WTVGKFQGESGFAAEQPAAEFPGTEPTHYSPDELRSMSAVSTYDIPMHLSYYEYLRHDGVNMAENHNLLSGLMTELKMRMDTDKMVMSLTKKLAGDRADAIMKDRVGAANINNQDCLAVAKQAWRVHCGEFTDYARKYVRVLNNLCNMGVAATTVESTIAAHCPVA
Ga0206094_113416	Ga0206094_1134161	F104572	MRPIALLAATNGVGDPAAHLRRGRPMSEHGKESVA
Ga0206094_113696	Ga0206094_1136961	F001537	FTTFPLLQLLFNYSSNMSIINRIVGVIHLVLYAVLAALVGRVLNHIFNGASGYSNNVTLFMAGLATVAIICNGAWALVLLTHGHRSWKLGAALSAISGLLLLAVSAKHLEVGGGYDRLTKATVAWSIISGGAAVLTGLALLLTRDHRHHDEHVTVHHPKTATTGPAVV
Ga0206094_115310	Ga0206094_1153101	F070907	QSYGTVDRVSPIVRENHHSRRPRVILLAGMAVVLGLVALGALIATADEPTEMLQMLARGENARMKTKVPPTVVSPPPEPADWDGSVAIIGKMPPTGVAPSALTEIGFETRGSITVRRDLAAENEYFRIYGRINHHLKATLREYRKMSMEYNNEIIYTGFKRVWTGQSEIQAGHIQRPLEGEFDVITVRDMDTGEVQYFRVH
Ga0206094_115945	Ga0206094_1159452	F002776	SCPIFASMAGAGVALIMIRADDLSIVEANAVLANILGYTDPTSFVGTAVWDKPLHSRLYQLDRHGRVVNESVNPFAFSEPKVKVEDADYMGQKSEDDSHIDCLWTARTANGNTLSARVTLSVLKGLDAKPTHFLLCSLPSQRQVTSSSASLSQSMQLPEIEVAC
Ga0206094_116177	Ga0206094_1161771	F001623	YYNFSRKMSMDPFVRRMSMVAGIFAIIGVIVGVVALATNYWTMGNMMPMTNGNDTFISGWQWNGLFYMCSSRDNNVGCESHFWTTTFVLCLLGLIFMLVGGIFSIWEMFKLSDRRYFIPMLFFVAVVLMIAGLFDYASWARVNSHSSRAMLASICFAFVSLPISAYVAGRYSAYDRYTNNGHVHNGQKYVPASTNGN
Ga0206094_116715	Ga0206094_1167151	F000914	LKSVLDFLDLPKLSENDPNLTSIFNGPLSGLEEFFRGNSFITFKYLKAYALLLELGRLFVVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKAMIQAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMGHFQHVFPASNMINESVKEVLRDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAAVLGQEYKK
Ga0206094_116826	Ga0206094_1168261	F086414	AVMMQQETLIMNKRKTYVEQMTAYLNDRIHELNKVKRELAQETRWLDLSSNRIFELEEREKLIKLQDIQTCLNDRTTQTNTDRDNVAGVLRDIQAQQTTVQASITQIQARMAAINAATGSGTPAAAGGAGGEAPAETPTTE
Ga0206094_116990	Ga0206094_1169901	F008470	EMETLLEDIIKNIDAIIAGIPLRWEDVKKENQRTVLTIALHCCLNGPVGVNKETTFPVIGKAKITDLVKVTNSSWRGFCGAVATFLVDRGVKADCNSMRLLNTYWPLKDWPNTQVRI
Ga0206094_117087	Ga0206094_1170871	F008470	KMEALLEELLKNINDVIAGIPLKWEDIAEGDRRVVLLCALHCCVNGPVGVNKRTTFPVVGEAQINALVKVSNSSWRGFCGKVAEFLVRKNVVIDCNSIRLIKTFWPLAPWPKTEANIIL
Ga0206094_117113	Ga0206094_1171131	F000206	MKVVLLLAILAVVVTAQTPAKPMWPKAGSATIFVHGWERRGDNHILRFFYDQTAGKERVDGPREFLGEFYWTTTIHDTTTKREYFVIHQESLILCFERASNGTIPTPNFDRARYIGKAEIELSVVDHWIERDERGRDRLQIFDRTDNQRIVRTDWDDERRGHAVTFHFHEWDANTPDPNMFKLPQSILAICNSV
Ga0206094_117151	Ga0206094_1171512	F100141	LIVASAQDSWNFQNCSFTVGGKYYDLSSLQAQGQFNFDQAIYQQDVTDLYVDATNAATNFHWELQVCGNVKSNYASCTTPSPVNQISSSGTTCTALGDLRSAAIDITPGQDGLMMTFYHGLAVSHIQEYSTRLYLLCDPSGAASIPHVEHLKSFYAWHIYLTTKLTC
Ga0206094_117528	Ga0206094_1175281	F000206	KLLGLLIAILVALVSAQNKPLWPAAASASLFAHGWERRGDRHFIRFFYDQSQGKERVDGPREHLGELYWTTTIHNTMTKREYFIIHQDSLITCYERASNGTIPAPKFERARYMGKAEIELTVVDHWIERDEMGRDHLQIFDRADNQRIVRMDWDARHHGRDHAVTFEFHEWNVAAQDPNLFTVPSAILAICNSV
Ga0206094_117645	Ga0206094_1176451	F005971	HCHSFLRPRFSLSMADSKHNDDPVQNKSLNLTTRKNFRDYQKQRDENLKAIEATLGFPLTLVCDYAAMSKVSADRGYENRAGEVIWGSYLEHIANCLKSFCEDSMNKEALTSALKDKKKLIVRTNDKEELPSYQNIRVRDGELVLEFKSDNYWTNIDSIDNSDGKKMLESTL
Ga0206094_117778	Ga0206094_1177781	F026174	GFYCYMDRIVQELLKRLPEILAGLPLEFQSIPENRRETALVIALHCCLNGPVGVNKQTNFPIVGSAKIKDLFGCSNSSWRGFCQQVAVIVAKIDPSIDCTQRRLNGKYWPL
Ga0206094_118052	Ga0206094_1180521	F003347	QSASQYSTYNQPNQAYGEGGVSEEDRLNKHIAKHAVGSRGQAMLQSNAMYQEPDPQPVRRQAGAVEHWADLHREFADVLDINELQKYRKHFRAFGEKEGFITADGLHELMETFFGQDLERKQIIETIAEIDYDNDGRISYREFLEVMCSLKSGDRNRKTKFGNFYKVLTLKNPPFWASRVGRIQN
Ga0206094_118156	Ga0206094_1181561	F053699	ASKASLEAEYLKKKATKDFRHPDEIGVQVAILRGLDTSLTKLHDHVKSIANHVKYVNESYTSTSNDFAALADKGGVPSLQRITALYFSLQEPRRVYLETMTDIEKELNGIIGTDLKRIWTIEETANRALTEKEHYHKDDKYRVQTEEKYKTAAAELVAAINEFSGKIVPVIDSYVQRVVTAEGTFHTATATAVS
Ga0206094_118355	Ga0206094_1183551	F010666	VFIVLALYLAVVLAQVAPTWPKAASTSVFIHGWERREDRHFLRYSFDQNLGKERIDGPRRFLGEEYWTNTIIDTKAKREYHVIHQGSLVLCFDRANNQSIPNPNFSMARFVGKAEIDLNPVDHWVQRSPDGRDLLQIYDRIDNGYVVRMDFDDGMRGHATTFRFHEWSVGAQDPNQFVLPQSILAICNSV
Ga0206094_118397	Ga0206094_1183971	F010890	VFALLLAVFCAVAFAQPKPNWPAAASVSIYAHGWHRHGDRVHLRYFYDQNLKKERVDAPLEYLGSVYWTTSIIDTNTQREYFVIYQGSLVTCYEHPANYSIPHPNFNNVRYVGKAEFEYNVVDHWIERREERDFLQIYDRVDNNYIIRTDWDDRYRRRVVTMEWRAWDAGAQDPSLFQLPANIMAICNSVPF
Ga0206094_118470	Ga0206094_1184701	F003395	TRQVPVSDGGVTASTESIAAKRHVGVHTPVIVAKTITANNNQLAYAA
Ga0206094_118773	Ga0206094_1187731	F026174	LNIMEAIIQTFLKRLPEILAGLPLEYGKIPEDRREAAVIIALHCCLNGPVGVNKSTTFPIVGPGKIKDLLGCTNSSWKGFCFQVATIVAKTSPNIDCTQYRVNGRYWPL
Ga0206094_119134	Ga0206094_1191341	F102215	AIVILFCAIVAAAFAGVTERDDHISANFWDKYQEPAAHQIKTIVRRSVDQLVNARQTAAVNFTTWCFEYQQYIDQFKWGLAATDPETNTEYFHGIVEDSSTDPAVVVGYIYGYSLDNQRLVQMAVDYNDNGYMRLFSFQFNPRNERYSDAFTVFSNADTTLTPQFLGSPEYTSLTKCA
Ga0206094_119228	Ga0206094_1192281	F000025	VIVLVALLALVSAQTPTTPVWPKAGSTSIAIRGWERREDRHFIRYIYDEAAGKERIDGPREFGGEFFWTNTILDTATKREYHIIHQGSLVLCFNRPTNQTVPHPVFSRARYIGKGEIGLTVVDHWVERSPEGRDHLQIYDRADNGLIVRMDFDDGRRGHATTFSFHEWSTGAQDPAQFVVPPNILAICN
Ga0206094_119465	Ga0206094_1194651	F000206	FAAVVVAQNKPTWPKAASTSIFAHNWERRGDNHFIRWWFDAAQGKERIDGPREFLGEFFWTTTILDTMSKRETFIIHQESLITCYQRASNGTIPTPNFANARYAGKAEIELDVVDHWIERDPMRGRDFLQIFDRTDNGHIVRMDHDDERRGHSVTFRFHEWSVGAQDPALFQVSAELQKICNVMP
Ga0206094_119536	Ga0206094_1195361	F085198	VLCIFRTTTVETTVLLANRGKTSELTVFVDGVHNPVDFGVTTDGFVGGVDQDDFIVFVGGILHNPVGAQDTQVTSTTANSLLSNRLVGSLEFELVNTSAGGFTVVDTLGQRLLASSSSNTDTVDHVTLLGFEAEATSLVRSSWVGNSVNGREISVFPASKPEQSPQNVRLLLLVKLLKIFVGTHCSPR
Ga0206094_119915	Ga0206094_1199151	F035589	WKAWSIYYFAYAVPELATLSKILRKNAFKFAVIHKKWIKRWSFRFGDHLHERAKVATPDSWKDDIRISFANGYKEANDYFKGKVNGILHRMVLDFFFSAIGVKVEETVMKALETVLDPIGKAIPSPIDEILEIDTLARECINMALRQNITKIVEVGIVEPYVSAWGELTF
Ga0206094_120035	Ga0206094_1200351	F102608	ALLPCTELYFISKMNQIQLLVLFFVSLFVSSQAANGCQYYDSCGVCNGDDSTCCQDYLGFEPAEVDVELLMWTNEQLIAEIATLQANLNETQDALQDSYVNEIDGGRLDLTEYIDAIHAFCAGCECSAEDCDNGKTGCGEEECKLDCDCLSLSQFEFLQSAFLGAIRSVNAV
Ga0206094_120325	Ga0206094_1203251	F020480	WQKDRYWEMDTLECFDCTLCSPGTTWWQTDCEKDHCVHQASVYNATRVCVGISVCLLCIAFITFCGNACFSVPSWVSTAFSGTTLLLSLCIIIAFAVAHPISIRSDREDTGDTSCSIGPCSSFIGDSNFTSLFKLLQGHWRWGATVGYLLYLTGTILLFVTLLVMLSTRYWKRASYPKI
Ga0206094_120781	Ga0206094_1207811	F064274	MKAKNNAINFRFFIEVASESLAVMKDKCRVVGFGSFPSAEADNQCLARC
Ga0206094_120895	Ga0206094_1208951	F008470	MEVLLDELLKNIDAIIAGVPLRWEEIPERDRRTVLLCALHCCLNGPVGVNKKTTFPVVGEAQINLIVKVSNSSWRGFCGGVAKMMVDRGVKRECNSLRLLGTFWPLKDWPKDQKVIV
Ga0206094_121005	Ga0206094_1210051	F008470	LMETLLNELLENIQAIVAGVPLKWDEIDKNNQRSVLICAVHCCLNGPVGVNKTTTFPLVGEAQINKLVKVSNSSWRGFCEVVAKYLVDRNVRVECNSLRTLGTFWPLKDWPKKI
Ga0206094_121185	Ga0206094_1211851	F008470	GVPLRWEEIDKTVQRDVLICALHCCLNGPVGVNKMTTFPIIGESQINRLVKVSNSSWRGFCSVVAKYLVDRNISVECNALRTLGTFWPIKDWTPKSK
Ga0206094_121342	Ga0206094_1213421	F057024	ADTFVAGKASYALFSISMEHVKIDLIHLQKIDGVPTDDKGLESSMKEFEGIVKQFHDHSKDKLPDKEPAFILFEAYFRAKQTADEAKKDAKDSSAKIKSKQLAILWIPDRENYKEETASEMAETAFKGKLHIDQVFKVSARSLLEYDELINMLM
Ga0206094_121626	Ga0206094_1216261	F000206	ALFFAILAVVTAQSTKPVWPTAASASIYAQGWGERRQDRHFLRFFYDQALGKERVDAPMEFLGEPYFTTTIHNTVTKREYFVIYQGSLITCFDRPSNGTVPQPHFNRARYIGKAEIELTPVDHWIERDERGRDFLQIYDRADNGYILRMDLDDERRRHAVTLHFHEWNAGAQDPALFNL
Ga0206094_121857	Ga0206094_1218571	F026174	QELLKRLPEILAGLPLEFQKIPDDRKEHAVVIALHCCLNGPVGVNKQTNFPIVGSAKIKDLFGCTNSSWRGFCQQVALLVTKIDPSIDCTQRRLNGKFWPL
Ga0206094_121929	Ga0206094_1219291	F019268	ITLLVLTFLVAVHGQEPPSDNIINFIKGIAVGLEVVFGDPAVCAKDLNVTESDFLNGYSSIKKGMADLSLSEVENGLKLWSAALLDVNQALNDCGAGTITADIEKILKEISGGTTGLLEFICREILSILENDVKDLFTKAIDAMEANNWHDCGLYSGEILGYLLNQ
Ga0206094_122072	Ga0206094_1220721	F024036	VAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILLAFLPIIYNXYNTYSKHLPAIPMQNSLIQTFAFILFLMSMFCVASMLPAGRYYYEPEGGYVGNPXVKFSFQYMYLYLAXFLHHLDLIDHYMFQFFQMFLRRCLKLYKQYTKLFKNTISKFVNFDKMSKVYYNVIFEQPNYNLNIK
Ga0206094_122081	Ga0206094_1220811	F008470	LTELLKNIEAIVAGVPLRWEDVPKESQRAVVICALHCCVNGPVGVNKKTTFPLLGDAQINLLVKTSNSSWRGFCASVAKWLVDSRVTIDCNALRQLNTFWPLKEWPKNNL
Ga0206094_122169	Ga0206094_1221691	F000206	GLLLAILVALVAAQNKPLWPTAASASIFAHGWERRGDRHFVRFWYDQAQGKERVDGPREFEGEFYWTTTIHNTMTKREYFVIHQDSLILCYERPSNGTIPAPKFANARYIGKAEIELTPVDHWIERDETGRDHLQIFDRTDNQRIVRMDWDARHRGRDRATTFEFHEWSVGAQDPNL
Ga0206094_122296	Ga0206094_1222961	F078310	VAHLSGKEGVDMSTPMFEIGVVYRKNSRLYLAVSERDLITFKNGRVVEVKPYNKYEVVRSISVDELCKRWGITIEHLDRETSKFLAPSPEGIKPRPRGSRRQR
Ga0206094_123248	Ga0206094_1232481	F008470	KIVAGIPLKWEEIGKDLQVPVLTCALHCCLNGPVGVNKETTFPIVGQTSIAAMVKVSNSSWRGFCFSVASYLVNQNVKVDCNSMRLLNTYWPIKEWPKRTENI
Ga0206094_123373	Ga0206094_1233731	F069542	AKEMFKLLALFVALVAVTMAALPFPCRTKPSQSLYQCNMLRRRWQSGFCGTPTVEPPVVWVGKGCPTPCAEKAKDLRQNPRAYCKANGNKKPSYGDGGCKLGSDCNIFCRETCTRQPNCAWTGTGCVLSEY
Ga0206094_123883	Ga0206094_1238831	F016908	EDLRKHCKSLIYWCYSFLAHVFRAEVEGQVTAADKLLKTLEEDDHLNKVMGDDLTKVMDSIHGVKSRNEKYKFDLGQRGLKDVLSMLDIPTLSENDPVLPCIFVGPLSGLEEFFRGNSFITYKYLKAHALLLELGKLFEVIDKAANCAKQGGTLLVYGVANAQLNALLDSTK
Ga0206094_123948	Ga0206094_1239481	F049370	QLHILLLSCLVALVFSQENTYRIDLALEYLGNVNWQQNTVTLTATSETIRTVLANNGYINYEVISRLKGAVSAIQGPITWVQPGQTFTSVLTISFGASHVNRPHILHTSTLGTGFVLESHQDTLTTVSQYNVTSGEGALAGATGGVVVNGYHSSTTGDATWIVNAILWVPV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029659: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences