Sample 3300029251

Basic Information
IMG/M Taxon OID	3300029251 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193103 \| Ga0167475
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300029251 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0127425 | Gp0193103 | Ga0167475

Sample Name

Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93

Sequencing Status

Permanent Draft

Sequencing Center

Beijing Genomics Institute (BGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	202175734
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	22

Dataset Contents

Total Genome Size

202175734

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Predicted Viral	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

All Organisms → Viruses → Predicted Viral

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Ecosystem Assignment (GOLD)

Name

Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

China: Beijing, Peking Union Medical College

Coordinates

Lat. (^o)

39.911947

Long. (^o)

116.4156125

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F041208	Metagenome	160	N
F050793	Metagenome	145	N
F052660	Metagenome	142	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F068941	Metagenome	124	N
F070133	Metagenome	123	N
F074964	Metagenome	119	N
F075480	Metagenome	119	N
F078003	Metagenome	117	N
F080163	Metagenome	115	N
F082714	Metagenome	113	N
F087335	Metagenome	110	N
F090515	Metagenome	108	N
F091068	Metagenome	108	N
F092228	Metagenome	107	N
F097493	Metagenome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0167475_100214	Not Available	85987	Open in IMG/M
Ga0167475_103825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7251	Open in IMG/M
Ga0167475_105624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5151	Open in IMG/M
Ga0167475_106271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4673	Open in IMG/M
Ga0167475_106357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4618	Open in IMG/M
Ga0167475_110786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2865	Open in IMG/M
Ga0167475_110963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2825	Open in IMG/M
Ga0167475_111484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2707	Open in IMG/M
Ga0167475_112173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2558	Open in IMG/M
Ga0167475_112597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2482	Open in IMG/M
Ga0167475_121278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1500	Open in IMG/M
Ga0167475_123464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1360	Open in IMG/M
Ga0167475_126138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1220	Open in IMG/M
Ga0167475_128373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1124	Open in IMG/M
Ga0167475_130119	All Organisms → Viruses → Predicted Viral	1056	Open in IMG/M
Ga0167475_131204	Not Available	1019	Open in IMG/M
Ga0167475_144850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	700	Open in IMG/M
Ga0167475_147148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	667	Open in IMG/M
Ga0167475_158750	Not Available	541	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167475_100214	Ga0167475_10021455	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167475_100214	Ga0167475_10021471	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCSANQFLESISDFDKIIFVIITYMKSYFDFCKDYSKISLHVHLVQFDFTTSILIQSFYNYSHRDLSFSTKLESYVSDSEIELLQEKLDLIREEICKLMGIDPDLQKKGHEENYIFNLNIDSDNQIGFFLQATEL
Ga0167475_100214	Ga0167475_10021473	F060985	MSNIDEKAKNNFTIEMRIFENYEKVRHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDSRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKN
Ga0167475_100214	Ga0167475_10021474	F032312	MPKIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0167475_103825	Ga0167475_1038253	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKQDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVVQSVSLCAAIGSIVSAMRRKPPKPVAVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0167475_105624	Ga0167475_1056244	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGEVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQENYQDNKNLILFPDSPAPSACAFSLLASAHST
Ga0167475_106271	Ga0167475_1062713	F039198	MKFTVSEMQSKKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0167475_106357	Ga0167475_1063577	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMP
Ga0167475_110786	Ga0167475_1107863	F075480	MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDHLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSLGIQVDLTEADTSHLKSCEVQMECRVGVFGKDGKATQWQKEILAATITFK
Ga0167475_110963	Ga0167475_1109633	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPILNKEGDPELLIGCVTEETVGEVYQWVSNYDFDEPCAGNMPS
Ga0167475_111484	Ga0167475_1114842	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISLSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVMLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDVIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTNAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFAIPQRDMADDAYEVEVDDKDGKVT
Ga0167475_112173	Ga0167475_1121733	F074964	MITKKNVNKLQNAVIKENACNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVTVCSQMLSKVGDTFVKFSLYSKVYKDNKIDKEKGIEAKTADWCYDNVVYGGEYKSFGFSTAETLETKNSAKWLVKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0167475_112597	Ga0167475_1125973	F091068	MNEKSQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPAD
Ga0167475_121278	Ga0167475_1212782	F067845	MKHWKNLFVCLLAGVLALGVLTACSGLGSGNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAWLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0167475_123464	Ga0167475_1234642	F090515	ALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS
Ga0167475_126138	Ga0167475_1261382	F070133	LGLLMAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIXXXXXSGKSKKLMIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQYESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0167475_128373	Ga0167475_1283733	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTAALLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQNEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0167475_130119	Ga0167475_1301192	F068941	NNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0167475_131204	Ga0167475_1312041	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVKLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIAGKCDCDELLATKNFLYCYT
Ga0167475_144850	Ga0167475_1448501	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDE
Ga0167475_147148	Ga0167475_1471482	F082714	MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIKTLRKA
Ga0167475_158750	Ga0167475_1587501	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPAAAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029251: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences