NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028903

3300028903: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Asp



Overview

Basic Information
IMG/M Taxon OID3300028903 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0313025 | Ga0302250
Sample NameEnriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Asp
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size234987191
Sequencing Scaffolds24
Novel Protein Genes27
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available5
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA3951
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0381
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F020914Metagenome / Metatranscriptome221N
F023098Metagenome / Metatranscriptome211Y
F026449Metagenome / Metatranscriptome198Y
F029455Metagenome / Metatranscriptome188Y
F036769Metagenome / Metatranscriptome169Y
F047076Metagenome / Metatranscriptome150N
F048337Metagenome / Metatranscriptome148N
F059033Metagenome / Metatranscriptome134N
F065806Metagenome / Metatranscriptome127N
F069433Metagenome / Metatranscriptome124N
F070158Metagenome / Metatranscriptome123N
F072819Metagenome121N
F076867Metagenome117N
F077341Metagenome / Metatranscriptome117N
F080090Metagenome / Metatranscriptome115Y
F082739Metagenome / Metatranscriptome113N
F086646Metagenome / Metatranscriptome110Y
F086799Metagenome / Metatranscriptome110Y
F088355Metagenome / Metatranscriptome109Y
F097412Metagenome / Metatranscriptome104N
F101222Metagenome / Metatranscriptome102N
F105254Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0302250_1000040All Organisms → cellular organisms → Bacteria228454Open in IMG/M
Ga0302250_1000251Not Available63139Open in IMG/M
Ga0302250_1000982All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin00323404Open in IMG/M
Ga0302250_1004652All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6505Open in IMG/M
Ga0302250_1005591All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica5442Open in IMG/M
Ga0302250_1010110All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2992Open in IMG/M
Ga0302250_1011639All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales2579Open in IMG/M
Ga0302250_1011678Not Available2570Open in IMG/M
Ga0302250_1011844All Organisms → cellular organisms → Bacteria2531Open in IMG/M
Ga0302250_1013900All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2140Open in IMG/M
Ga0302250_1014881All Organisms → Viruses → Predicted Viral1996Open in IMG/M
Ga0302250_1017497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1709Open in IMG/M
Ga0302250_1021402All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA3951412Open in IMG/M
Ga0302250_1022079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1370Open in IMG/M
Ga0302250_1022212All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1362Open in IMG/M
Ga0302250_1025028Not Available1219Open in IMG/M
Ga0302250_1025628All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus1191Open in IMG/M
Ga0302250_1040445All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria815Open in IMG/M
Ga0302250_1042918Not Available779Open in IMG/M
Ga0302250_1051339Not Available676Open in IMG/M
Ga0302250_1061806All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus588Open in IMG/M
Ga0302250_1069706All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria538Open in IMG/M
Ga0302250_1076915All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038501Open in IMG/M
Ga0302250_1077035All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0302250_1000040Ga0302250_1000040163F069433MAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNAEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGEAGYCPQDSSGCMDFTDPTITALSTEVKGIHFRQTMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWNCASINLPSAAEHPYKSANPPLAWDGYVPWDWCVYTPPGSNWGSCEYSGGHDHTAWNCKCNPYT
Ga0302250_1000251Ga0302250_10002514F000388MKVVFVCTEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKDGKNSMLVNRKG
Ga0302250_1000982Ga0302250_10009824F047076MTNGELYALAQLIIPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQDAVKIDSVKDASGDDIFWEVRHRKLLIYDSNKELITDATIGNHKLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPVVEDTEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0302250_1001855Ga0302250_10018558F105254MAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDNPTNGHPYYKDEPEKVRDFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKSPKSVIVTYNIF
Ga0302250_1004652Ga0302250_10046521F048337MTLIEETVTFEGILRREEMPDTETARLQDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTDAAPGRIIADADFVKTVGKRSVAKSIQLNAGKPIQLVLGPGTTGKIEVHV
Ga0302250_1005591Ga0302250_10055912F076867MDEKNRNLVEIAKKKRYIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAAGEIARFKVGDVFKWFYVKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDLEIRYIIEQFAGKKNANKDGKGNS
Ga0302250_1010110Ga0302250_10101101F048337MIEKNVTFEGILREDEEQNNETAMLEDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTNAAPGRIIADADFVKTVGKRSTAKSIQIDAGKAIRLVLGPGTTGKI
Ga0302250_1011639Ga0302250_10116397F082739MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPIDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTNPFVNEAMVNGEP
Ga0302250_1011678Ga0302250_10116783F086646MDFIFRIQNHYFEKGSPWVELDKIKQRSWFLSVDIEDDGAVPCYDTVSELRLSKGVAFKSVKILTGKTQETHPYWEALLDMSYLNSTELRDVTFKDLPGESGIYMLNIWFDYDGEELNFGDDFKKLCEYRHKWDDGWICSKCGVRRADWIESDIKTTTREESY
Ga0302250_1011844Ga0302250_10118444F029455MRQIDLDLWADGAADNLPKITVTAQGLRLEGEPAEFDRLCLILSGWIKQ
Ga0302250_1013900Ga0302250_10139001F065806SGGAARNRVYFYGGYTQDNTAETDGASGKCLQFNPKNATYWIEQDFNVPVTSGVARTVSIKMKDDASFNGTVELELWYNGVCIVGPTTKTMTTSYVAQEMTATAGQIAADGVLTLKVKVYGTAGAVYADTLSYT
Ga0302250_1014881Ga0302250_10148811F070158MADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVT
Ga0302250_1017497Ga0302250_10174973F088355MKNLTNKISVFVGRKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0302250_1021402Ga0302250_10214023F086799MKALKVSYSRLISKGNYENAKIEIELEVEPGEKAGEVFDAAKRWVDKRIVVEKLSDYKIKEAKIIISDKRNHTLAEIEEAEEILSKLKVEDDELPF
Ga0302250_1022079Ga0302250_10220795F088355MKNLTNKINIFAGQKGQLILAILTIALFVLAAGAPNATIGIGR
Ga0302250_1022079Ga0302250_10220797F088355RRKIMKNITNKISVFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0302250_1022212Ga0302250_10222123F097412MSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAVAGDGMDRKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0302250_1025028Ga0302250_10250283F101222MNVWVAIAINIVVYLVSFAYAWGKLNTKISHIEKRYYELENEISDIADCSIRKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEIKNGKYTK
Ga0302250_1025628Ga0302250_10256282F072819MCRGIGVCIRRPDRTGGRASIRAGITIARGIVNVTRIHGEEMFQDQIKAQEVSFRIARLEGENAVGELVNWCRNNLDELTVQCFTHKRFMSVQALIDALCEVYRDLGVEGDKGNVSVFVLFLAGEHRDKIYASHVVELNDTHRQIIRDKLGLDIEEIEPGLSKLDWRADAGI
Ga0302250_1040445Ga0302250_10404453F023098ELVESLRDINQKLDGMIVRQIEYAETSARIEERQENIERIVTNGLSHNVANIAKRLDVFCEEVKKRLDELEDFQWFRKPITAFRDGIFIATFKVAMIGALIYVLIHFGREFIQVVMK
Ga0302250_1042918Ga0302250_10429181F077341GVKFVYGTTEMELPHCAGKLGFQELKNTWRTKSGNLKVQHKGFIPIITITMWNLGIWGASAFNMASLIQMLNAAKTDGIMIYPRYEYSNDLGYLCILNSDINPEDFSQNISAGQTLELSFIGKQKIDNMPTYTTLEGFYYMVDYYDNYLIDHNGNNLVLKG
Ga0302250_1051339Ga0302250_10513391F059033MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNVPSFGYEKAFKGFHQYAKDLGQVIAQKGATTAYRSSIFAVRWDEFDGASLRFNN
Ga0302250_1061806Ga0302250_10618061F072819MCRGTGVCIRRRDRTGGRASIRAGITTARGIANVTLIHGEEMFQDQIKAQEVSFRIARLEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQAFIDALCEVYQELGVEGDKGNISAFVLFLAGKHRDKIYASHVVELNDTHRQ
Ga0302250_1068810Ga0302250_10688101F020914MAIYQKYGFAIDQILSENQALPNATSGDSTNTIELQTVADDGLHIVVCAASTTVELASAATLEIRPTVGATDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADESADKVEAFSVRR
Ga0302250_1069706Ga0302250_10697062F026449SISKSMMIPRRLGEGDEAYYTYVEEADDDANKGSA
Ga0302250_1076915Ga0302250_10769151F036769IPLVIVTLLMVVPGPVQLPAAQPQDILTGNWVLKFEDGREGWASLVADNYPKTGFSSKGKAEVPGFKPVDLTSSVVPEYYREGQVILYNAQAQQRPFHFIRFFLGAKGAVTGYVATFDSKQYKFKAYRR
Ga0302250_1077035Ga0302250_10770351F080090SVVSRTPWSEPLRVDKKLSNANSWRKTYEEDEAAL
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