NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028406

3300028406: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #285 (v2)



Overview

Basic Information
IMG/M Taxon OID3300028406 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0154665 | Ga0306891
Sample NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #285 (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size52129103
Sequencing Scaffolds41
Novel Protein Genes45
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available30
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Nanohaloarchaea → Candidatus Nanosalinarum → unclassified Candidatus Nanosalinarum → Candidatus Nanosalinarum sp. J07AB561
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lacusprofundi → Halorubrum lacusprofundi ATCC 492391
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → Halorubrum Tailed Virus 71
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001038Metagenome796Y
F001551Metagenome673Y
F002325Metagenome571Y
F002411Metagenome561Y
F002703Metagenome536Y
F003128Metagenome506Y
F006455Metagenome373Y
F006730Metagenome366Y
F007732Metagenome346Y
F007954Metagenome342Y
F011984Metagenome285Y
F013969Metagenome266Y
F027372Metagenome195Y
F027696Metagenome194N
F032101Metagenome181Y
F046115Metagenome151Y
F047394Metagenome150N
F048680Metagenome148N
F054455Metagenome140N
F057005Metagenome137Y
F059486Metagenome134Y
F059487Metagenome134Y
F063209Metagenome130N
F066289Metagenome127Y
F068284Metagenome125Y
F069544Metagenome123N
F070700Metagenome123N
F072891Metagenome121Y
F083454Metagenome113N
F084898Metagenome112N
F085171Metagenome111N
F086358Metagenome111N
F089595Metagenome109Y
F100062Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0306891_106835Not Available1328Open in IMG/M
Ga0306891_107517Not Available1236Open in IMG/M
Ga0306891_108020Not Available1168Open in IMG/M
Ga0306891_108660All Organisms → Viruses → Predicted Viral1098Open in IMG/M
Ga0306891_109405All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Nanohaloarchaea → Candidatus Nanosalinarum → unclassified Candidatus Nanosalinarum → Candidatus Nanosalinarum sp. J07AB561023Open in IMG/M
Ga0306891_110469Not Available938Open in IMG/M
Ga0306891_110984Not Available900Open in IMG/M
Ga0306891_111037All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales896Open in IMG/M
Ga0306891_111530All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta865Open in IMG/M
Ga0306891_111769Not Available848Open in IMG/M
Ga0306891_112091Not Available829Open in IMG/M
Ga0306891_112455All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lacusprofundi → Halorubrum lacusprofundi ATCC 49239808Open in IMG/M
Ga0306891_112565Not Available800Open in IMG/M
Ga0306891_112636All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae796Open in IMG/M
Ga0306891_112854All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium784Open in IMG/M
Ga0306891_113520All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria749Open in IMG/M
Ga0306891_113752Not Available738Open in IMG/M
Ga0306891_114093Not Available722Open in IMG/M
Ga0306891_114329Not Available711Open in IMG/M
Ga0306891_114937Not Available683Open in IMG/M
Ga0306891_115116Not Available676Open in IMG/M
Ga0306891_115514Not Available660Open in IMG/M
Ga0306891_115740All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense651Open in IMG/M
Ga0306891_115849Not Available646Open in IMG/M
Ga0306891_115943Not Available643Open in IMG/M
Ga0306891_116192All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → Halorubrum Tailed Virus 7635Open in IMG/M
Ga0306891_116519Not Available623Open in IMG/M
Ga0306891_116778All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis615Open in IMG/M
Ga0306891_117565Not Available588Open in IMG/M
Ga0306891_117805Not Available581Open in IMG/M
Ga0306891_117896Not Available577Open in IMG/M
Ga0306891_117928Not Available576Open in IMG/M
Ga0306891_118053Not Available572Open in IMG/M
Ga0306891_118098Not Available571Open in IMG/M
Ga0306891_118243Not Available566Open in IMG/M
Ga0306891_118480Not Available560Open in IMG/M
Ga0306891_118567Not Available558Open in IMG/M
Ga0306891_118610Not Available556Open in IMG/M
Ga0306891_120245Not Available511Open in IMG/M
Ga0306891_120281Not Available510Open in IMG/M
Ga0306891_120398Not Available507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0306891_106835Ga0306891_1068354F063209MSEAQLLKEMKQLMKDIKQLKINQKNMEKKLDKAIGNANGQPDAEDHIEVWNDEQDLPGDIRIGKVIKEAKTGRRGVRRIQVGKMEQILGRKRTRTLEIMRELDRKHEN
Ga0306891_107517Ga0306891_1075172F011984CDCCQIRIDDSWAGPALVVEVHNGVDTDVSGDYCVNCAGSVADAIRSVIEDNNRTDSINE
Ga0306891_108020Ga0306891_1080203F002703LTHAKRESKALKAQLEASRIAYADQLAAFEKSIYMPAVVDRRDLFEKTRDKYNER
Ga0306891_108660Ga0306891_1086601F007732MSDEIIVSSTEALYDDYADLKLQTSSGYAPCGLAGIVVNDCDIICGNCATDEELADYDNGSIFANSEWDYPAPLCEDCQKPLNVGLFVHKSHDPELHFRLRMTEELGGVDTDCLTIEEIGEKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYINNI
Ga0306891_108660Ga0306891_1086603F006455EIEPEFDHQQQTFQRRRDGLVVAIEREGMSAYNVFTLPENYYEDDQVIDCIEVGVEPEDAAETAREWMEQNNRQ
Ga0306891_109405Ga0306891_1094051F070700VNEIDDRTQHITDDDIKHGTDGGAIQDINKIREALETFQQSAEETWSEHMEGIEQGHYRIVEETDDVIVLAADDELYKHYLTPTDRHDTTDFHAAVSGVMHSVAKRLTAYKWHYDYPLVIAKPDDQPKESD
Ga0306891_110225Ga0306891_1102251F001551MIYAQHFSAEEFREWSDDMSPRLVTMLDVLRFRLGSAIEISASEYALGRNLGVGKMSEHNIDEWGEVLAV
Ga0306891_110469Ga0306891_1104693F084898MNVQYKNSKFKRVTQKDIVSTLETIHGIGQDTAQDVVSLVDATDYKDLLNDDRTDLKVNVKRALLTSQINRESVLAVVLYQAQKNDGEEVILYKKGDSSDVQ
Ga0306891_110984Ga0306891_1109841F068284LGGFADRDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVNDIAPQLQQLAGHAPYDTTPTDIGYEIHKEDVLPAFREAYHTEAVNL
Ga0306891_110984Ga0306891_1109842F007732MDEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIIVNDCNIVCGNCATDEELADNNNDAIFGSAEWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYATDMFASEEHY
Ga0306891_111037Ga0306891_1110374F027696MSTTKLSTVASNLDITEHGDERVIDFDIGANTDYEIQSCVIVDEDDRVVEAVVRFGRVEERPELGIDRKILYPAWANMVSEATDVEAVEGDLSDFSHIVPHLRVHRENVEK
Ga0306891_111530Ga0306891_1115302F013969QGVTRGYKDGLQPESLADGNWLVKQNQPVSKIETKSDTNLRSLYES
Ga0306891_111769Ga0306891_1117691F086358NHLAFDWLDREIIQRQFDIVQERTYDHPSHYAREIVLKQIVTGEYEDDNYDSRLRLWDELISFTRYTVKVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLRRTNNAEVDPNPDKQGENRLDVLDMTITPELRYTNLGPLIDTEWFVYNS
Ga0306891_112091Ga0306891_1120911F054455LSVCRWVISKRYGPMRLCYGWWVASYKEQSEKQLGALCDVRATPVFYAGLQRGTDSP
Ga0306891_112455Ga0306891_1124553F003128MQIEVSASDIKSEKKADDRGRVTLGSEHAGKTVTVAVLEVEDEDEENDASEVTR
Ga0306891_112565Ga0306891_1125651F027372MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELSDNDNGAIFGNSEWDYPAPVCDDCQKPLNVNLLVYKSYDPELNFRLRMTEELGGFADTNCLTIEEIGEKASERAAEIGRDYAPTDMFESEEHCEIPTDSSQYINDIAPQLQQLAGYAPYDTTPTD
Ga0306891_112636Ga0306891_1126361F011984ASSCCDRRGARGRFPMRPIICDACQIRIDEDWTGPALEVKVHNGVDSDVAGDYCADCAADIADAIRSVIGANNRSDSINE
Ga0306891_112854Ga0306891_1128542F089595SDTRNNQGQEQVMFHLGVRPNELMGSPATWGRISGKYTSLIAAVQSLKAG
Ga0306891_113520Ga0306891_1135201F085171TRREKMNKNKHTDLDGLIDLDRRSLIKLGNSAVVSIPRADDLGIIGNIEDLDAAVSVRLVDSNQIIIEARVDLSNVELGDIDLTLD
Ga0306891_113752Ga0306891_1137522F006455AGWTEIEPEFDHQRQTFQRRRDGLVVAIEREWTSSYNVVTLPENYYQNDQVIDCIEVGVEPEDAAETAHEWMEQNNRQ
Ga0306891_114093Ga0306891_1140931F069544LQVYVEEIREEGISALKNYADEFYYRKDKFRAIDAWFEYLGYTNLFPFKKGVRQAFGYNERNLKEVIHDYSKEYNRLDFNPNLFNEVKPAIIKEDGRLDKYKLEYVYNVLYEKDNYLILEFISQNYKSYKTNSLRKILIELGYIEEKTNREFVSYIKKHMDYYGIVYESVNSTNIFFNK
Ga0306891_114329Ga0306891_1143291F059487RNMNPIDRFVDRVVIRSACPVEPCASQSWVKMRAVAVAFLFAMPGLYMINQGFESTGLIVAVANMLITINIMSTRINQRLEHGHTCGRTDISVNSEDQQ
Ga0306891_114937Ga0306891_1149371F047394MAESTQPTETRAKTTNDSFQTDVSALQETTDRAAEILDSHGEPVTIARLVGTVVRLGGRDDHRFETI
Ga0306891_115116Ga0306891_1151161F063209MSEAQLLKEIQQLLKEMKQLKINQKNIEKNQKNIERKLDKAIGNANGQPNAEDHVEVWNDEREAVTDIRIAKVIKEAKKPGRRGIRGIQVGKMEQILGRKRTRTLEIMRELDRKHENLNYKNRGGNKGSY
Ga0306891_115514Ga0306891_1155142F059486MSSKRASVNPLAGFLKPQSPAERLAAQQRDREKLQRERQLKELQEEEAKARGEAGKRPVGRPRGSKNKPPPLTCPFRGIHRECRE
Ga0306891_115740Ga0306891_1157401F002325TDEVSTIPDNTVAHYDASQLSLDDGDTVSVWPDEQGDNDLDIQTGSPTYVESGINGNPAIAFDDDALEGTGLSVTQPNTTYMVFEYQSGFDGGRVLSGVSKRQITPEADQSSNRWSIHGGQGLVFGTQDINIQQMTAVFDGANSIIREDGVEIAVGDAGTNYLGGLSVGYGARGYYDYGEGRHYADAYVSEIVLVNSGSVDLDFENQLLEKWGITA
Ga0306891_115849Ga0306891_1158491F007954FGAASGVTVAVELEDGKVMTQRWGAVEATVEATSETIREAWTKIATSGGLDGWTKFQSMAAEYGVHSMKRPAMIDKLTDMGVMPGDNPSDTEQTVFAAPRTDGMTSSKALATAGD
Ga0306891_115943Ga0306891_1159431F100062FQGMAAEYGVVNMKREPMVDTLTDMGVMPGDDPSEDTTEQSEPETFKDLSEDKQDELRATVETDPSDTDFKQVKSLLETGADYVALAGECLNHEEHEGETVGAKLTPDGMIPFCNGCEHKVENVTVERLSDTEQTVFSALRKDGMVSSKALATAEN
Ga0306891_116192Ga0306891_1161921F072891MSNQIEDDEIAQFVTKAAKFATISGVSIAVEFDDGTNMNHTWGEIETTPETTPETTPETTPKRNEAEIRDAWAKIAAEEWQKFQSAAAEFGVTAGKRAERVDKLVDLGVMPGDDPSEDTSEDTTEQ
Ga0306891_116519Ga0306891_1165191F027372VKPSITSRSNYAGSGCNPPDGFCATTPERRDIRPGNQIMSDEIIVSSTEALYDDYANPKSQTPSGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCQKPLNVDLLVHRSYDPELHFRLRMTEVLGGFADTDCFTIEEIGAKAAEHAGEIGREYAPTDMFESDEHYEIPTDSAQYVNDIAPQLRQLSG
Ga0306891_116778Ga0306891_1167781F002411MVIRSLLPISMETMHDPKEPVFLIALKIMRHAMLCLSVIMFLICVCWHPERMCRA
Ga0306891_116778Ga0306891_1167782F001038YVIRHHHQKNDVESNRGSLENVAKVFVLFLCGVQLVLRSGVLTVLDLDEVDVAPSFVEVFRSVLSGVGGSTGGWRCC
Ga0306891_117565Ga0306891_1175651F057005EWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYANNIAPQLRQLAGYEDGTGKGTYNITPTDIVYDIHKEDVLPAFREAYHTEAVKREI
Ga0306891_117805Ga0306891_1178051F083454MTDNTTIGLKVSHERNARIERKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESTTTQHTPEDRRDAEIYDALLGQIP
Ga0306891_117896Ga0306891_1178961F083454MSNKTTIGLKVSHERNVRIERKVDDAGYQSRQSYIRALIDDDLGGFDSTVESTTTQHTPEDRRDAEIYAALLDHIPLKGWTRFGRFKGEIAQVTGYGKDSLFGELKSLRRNGFCTIRVLNPTDENPH
Ga0306891_117928Ga0306891_1179281F063209MSEAQLLKEMKQLMKDIKQLKINQKNMEKKLDKAIGNANGQPDAEDHIEVWNEEQDVPGDIRISKVIKEAKTGRRGVRRIQVGKMEQILGRKRTRTLEIMRELDRKHENLRYENRGGNKGSYLYYTG
Ga0306891_118053Ga0306891_1180531F007732MIEVIASSTEALYDDYANLKLQTSSGYAPYGLAGIVVNDCVAVICGNCATDEELADNDDGSIFANSEWDYPAPACEDCQKPLNVNLIVHKSHDPELHFRLRMTEELGGFADRDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVN
Ga0306891_118098Ga0306891_1180981F006730ASEITDYSQLENRIIGTEVDEYIDGTAGQVESKGFQTPTNYASSNSGDESGTFTDGLENYVGYFIDSYEYEIYISLYGITPPDANLSFTPSGGLTRVNGLNILTDPEEGSRKTVSLSDSANFDPIQVTESDPFSFSYDVSASNKAPYGDAGYTVEYTATFNVVTNIPHNHEFDYAN
Ga0306891_118243Ga0306891_1182431F066289MNEIIVSSTEALYDNYADLKSQTSSGYAPFGLAGIVVNDCDIICGNCATDEELADNDNDAIFGNSEWDYPAPVCEDCQKPLNVDLLVYKSHDPELLFRLRMTEEF
Ga0306891_118480Ga0306891_1184801F007732GSGCNPPDGPCAKTPERRDIRPGNQIMSDEIIVSSTEALYDDYANLKLQTPLGYAPYGLAGIVVNDCDIICGDCATDEELADNDNGAIFGNSEWDYPAPVCDDCQKPLNVDLLVYKSYDPELHFRLRMTEELGGFADTNCLTIEEIGEKPDQL
Ga0306891_118567Ga0306891_1185671F046115VFAICVKTGIIFKMRSTSFFHVSVPNIYGTSSSTYLIIFLKVISKVLFFNITQKFTNLLVQLSIFLIDLFVGTYRLSSHARLEAFVIQTKLQ
Ga0306891_118610Ga0306891_1186101F007732MSDEIILSSTEALYDDYADLKLQRSSGYAPCGLAGIMVNDCDIICGNCATDEELADYDNGSIFANSEWDYPAPLCEDCQKPLNVDLFVHKSHDPELHFRLRMTEVLGGFADTNCLTVEEIGEKAAERAAKIGRDYAPTDVFESDEHYEI
Ga0306891_120245Ga0306891_1202451F048680QNGQAVIPVAIGAAVVGGAAIGYATSYVQDKYLGDDFDETAYDESQADEVHSEIIENGKEKAYYDDSMLTNLGNVLSNSKQVAYGDGRVDAIEQMNLGNSKQAAIDAAVATVDEFFATQQENLLEHYSFQVDNLLRQATTINNTTGLNIEDVFNTDIDDSLLASDAEKTT
Ga0306891_120281Ga0306891_1202812F011984ICDACQIRIDEDWTGPALEVKTHTGVDSDVSGDYCVDCAGDIADAIRSVIDANKTDFHK
Ga0306891_120398Ga0306891_1203981F032101RLSRSTPPRLVVLNIATLKSIRPIVPFAMSNQNGTDEIEPLVNEAANPETALCVNFNIVGDLLIGELDSWHVGICKIEKDDDDLLVYGENGHLVERIDTDVWTTSTLFDGIEAKDLAKIADTINGAIASEYDEL

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