Sample 3300028120

Overview

Basic Information
IMG/M Taxon OID	3300028120 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132855 \| Gp0291469 \| Ga0247511
Sample Name	Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe36 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	54586245
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location	USA: New York
Coordinates	Lat. (^o)	42.4447	Long. (^o)	-76.485	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F018395	Metagenome / Metatranscriptome	235	Y
F021795	Metagenome / Metatranscriptome	217	Y
F031111	Metagenome / Metatranscriptome	183	N
F045836	Metagenome / Metatranscriptome	152	Y

Family

Category

Number of Sequences

3D Structure?

F018395

Metagenome / Metatranscriptome

235

F021795

Metagenome / Metatranscriptome

217

F031111

Metagenome / Metatranscriptome

183

F045836

Metagenome / Metatranscriptome

152

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247511_103541	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	2948	Open in IMG/M
Ga0247511_109064	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	1302	Open in IMG/M
Ga0247511_116027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	743	Open in IMG/M
Ga0247511_122143	Not Available	546	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0247511_103541

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes

2948

Open in IMG/M

Ga0247511_109064

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027

1302

Open in IMG/M

Ga0247511_116027

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

743

Open in IMG/M

Ga0247511_122143

Not Available

546

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0247511_103541	Ga0247511_1035411	F031111	MNNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP
Ga0247511_109064	Ga0247511_1090643	F018395	CLMSAGQKSDRTDTAYAAKAHELSLKNRNWLRHGKGTTAGKIDEMLLDGATIEQMAKRAKTTKAAVSVHLTHLRKEHKLAIVKKDGVYRYDVKQAK
Ga0247511_116027	Ga0247511_1160271	F021795	ADRIRRWRERKKAEGKSSFTVVLSHQAREILAEEKEKTGESYAVIMEKALLGLKKQGYTPPILRHFPRREEVLARVAAQDSPPAPASNAGRVNHEGDRQPRILIDDLANYPTLEDIEREQAAKELNGVHDLKSSEGLITRLLRSSAGPFGRKKKWFK
Ga0247511_122143	Ga0247511_1221431	F045836	TVSAFLDPVQWLICGICGWSVERIDQAMLAAAGMVVVLFVVLTYFYPEGKLFSFPTPHVGVAILGKAIGAVLMTGLIHWLKKRQLGKKARS

Scaffold ID

Protein ID

Family

Sequence

Ga0247511_103541

Ga0247511_1035411

F031111

MNNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP

Ga0247511_109064

Ga0247511_1090643

F018395

CLMSAGQKSDRTDTAYAAKAHELSLKNRNWLRHGKGTTAGKIDEMLLDGATIEQMAKRAKTTKAAVSVHLTHLRKEHKLAIVKKDGVYRYDVKQAK

Ga0247511_116027

Ga0247511_1160271

F021795

ADRIRRWRERKKAEGKSSFTVVLSHQAREILAEEKEKTGESYAVIMEKALLGLKKQGYTPPILRHFPRREEVLARVAAQDSPPAPASNAGRVNHEGDRQPRILIDDLANYPTLEDIEREQAAKELNGVHDLKSSEGLITRLLRSSAGPFGRKKKWFK

Ga0247511_122143

Ga0247511_1221431

F045836

TVSAFLDPVQWLICGICGWSVERIDQAMLAAAGMVVVLFVVLTYFYPEGKLFSFPTPHVGVAILGKAIGAVLMTGLIHWLKKRQLGKKARS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028120: Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe36 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences