x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300028075
3300028075: Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S12 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300028075 Open in IMG/M GOLD Reference Gs0132855 | Gp0291466 | Ga0247508 Sample Name Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S12 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 68343657 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa Type Engineered Taxonomy Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) na → na → na
Location Information
Location USA: New York Coordinates Lat. (o ) 42.4447 Long. (o ) -76.485 Alt. (m) N/A Depth (m) N/A Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F022683 Metagenome / Metatranscriptome 213 N F028541 Metagenome / Metatranscriptome 191 Y F089689 Metagenome / Metatranscriptome 108 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0247508_123592 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 661 Open in IMG/M Ga0247508_127361 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 581 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0247508_123592 Ga0247508_1235921 F022683 IAKGRCVMASEMADQMKPLTDFYAKWSKDSLDMMSKGMAMYNRMSRAWTEVGEGSAAEKPEDMLKKWTEAFSGSYNELFEMYAQPFKMFGMGGQTPGKEAWEEAFAKWQKMFTAMPSGPAPAAGDEFMNFSKNWFEGYSKIWQTWMESMQRMGEACKSAVSEGEKPDAAMGAFTEISDRFMQQWSAFVTEQAQAFFTLWRSRLPSEKKEPAKKAKKE Ga0247508_126269 Ga0247508_1262691 F089689 IDEVSQFLFDAEDDPRCPYHIIYLPKLSKPVSNAGIQ Ga0247508_127361 Ga0247508_1273612 F028541 QRQDNREVTMDEKERLKLVNRLKTVKTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPGKTEEKPRVSLPVGKLGGVGSFTALLFLFYGLVSIVTAVMKILQGQMEGDEIKQLIMGGLFLLFGVVIYVRARRAQRKTAEET
