NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028006

3300028006: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-4-E_N



Overview

Basic Information
IMG/M Taxon OID3300028006 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133410 | Gp0290887 | Ga0247717
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-4-E_N
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size178277475
Sequencing Scaffolds38
Novel Protein Genes42
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
Not Available6
All Organisms → cellular organisms → Bacteria → Terrabacteria group4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00591
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_41
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → hill → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5788Long. (o)-110.8509Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000767Metagenome / Metatranscriptome899Y
F001230Metagenome / Metatranscriptome741Y
F001314Metagenome / Metatranscriptome725Y
F001870Metagenome / Metatranscriptome624Y
F007999Metagenome341Y
F010655Metagenome / Metatranscriptome301Y
F014863Metagenome259Y
F015966Metagenome / Metatranscriptome250Y
F025222Metagenome / Metatranscriptome202Y
F028883Metagenome / Metatranscriptome190Y
F029668Metagenome / Metatranscriptome187Y
F031917Metagenome / Metatranscriptome181Y
F032127Metagenome180Y
F043269Metagenome / Metatranscriptome156Y
F049815Metagenome / Metatranscriptome146Y
F050234Metagenome / Metatranscriptome145Y
F051753Metagenome / Metatranscriptome143Y
F053149Metagenome / Metatranscriptome141Y
F058115Metagenome / Metatranscriptome135Y
F058771Metagenome / Metatranscriptome134Y
F060873Metagenome132N
F063248Metagenome129Y
F063434Metagenome129Y
F066994Metagenome / Metatranscriptome126Y
F067588Metagenome125Y
F072063Metagenome / Metatranscriptome121N
F076730Metagenome117Y
F079738Metagenome / Metatranscriptome115Y
F079855Metagenome / Metatranscriptome115Y
F081578Metagenome / Metatranscriptome114N
F083539Metagenome112Y
F083984Metagenome112Y
F084524Metagenome / Metatranscriptome112N
F089956Metagenome / Metatranscriptome108Y
F095087Metagenome / Metatranscriptome105Y
F095096Metagenome105Y
F102223Metagenome101Y
F103798Metagenome101Y
F104646Metagenome / Metatranscriptome100Y
F105434Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247717_1000258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria16966Open in IMG/M
Ga0247717_1004179All Organisms → cellular organisms → Bacteria2736Open in IMG/M
Ga0247717_1005689All Organisms → cellular organisms → Bacteria2206Open in IMG/M
Ga0247717_1006247All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2079Open in IMG/M
Ga0247717_1006371All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2051Open in IMG/M
Ga0247717_1007487All Organisms → cellular organisms → Bacteria1850Open in IMG/M
Ga0247717_1008948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani1654Open in IMG/M
Ga0247717_1011741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1412Open in IMG/M
Ga0247717_1012660Not Available1355Open in IMG/M
Ga0247717_1016115All Organisms → cellular organisms → Bacteria → Terrabacteria group1181Open in IMG/M
Ga0247717_1018512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1096Open in IMG/M
Ga0247717_1020248All Organisms → cellular organisms → Bacteria1046Open in IMG/M
Ga0247717_1020444Not Available1041Open in IMG/M
Ga0247717_1022601All Organisms → cellular organisms → Bacteria986Open in IMG/M
Ga0247717_1025156All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059932Open in IMG/M
Ga0247717_1026233All Organisms → cellular organisms → Bacteria → Terrabacteria group912Open in IMG/M
Ga0247717_1026824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi902Open in IMG/M
Ga0247717_1029927All Organisms → cellular organisms → Bacteria853Open in IMG/M
Ga0247717_1030036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales852Open in IMG/M
Ga0247717_1030496All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia845Open in IMG/M
Ga0247717_1031074All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium836Open in IMG/M
Ga0247717_1034558Not Available792Open in IMG/M
Ga0247717_1038670All Organisms → cellular organisms → Bacteria → Terrabacteria group747Open in IMG/M
Ga0247717_1038968All Organisms → cellular organisms → Bacteria744Open in IMG/M
Ga0247717_1042511Not Available713Open in IMG/M
Ga0247717_1045625All Organisms → cellular organisms → Bacteria → Terrabacteria group687Open in IMG/M
Ga0247717_1046635All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium679Open in IMG/M
Ga0247717_1046992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium676Open in IMG/M
Ga0247717_1057808Not Available607Open in IMG/M
Ga0247717_1059993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales596Open in IMG/M
Ga0247717_1064388All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
Ga0247717_1070238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4551Open in IMG/M
Ga0247717_1070252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria551Open in IMG/M
Ga0247717_1075329All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium532Open in IMG/M
Ga0247717_1078106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium522Open in IMG/M
Ga0247717_1081004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium513Open in IMG/M
Ga0247717_1081654All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia511Open in IMG/M
Ga0247717_1084905Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247717_1000258Ga0247717_10002583F081578VSNAGHRQELRPHLRDEQVPGDSVIVVRGGPASLATLATHARRTHDALMLDGQSLWGVSVFCALDDIRPSSLDGLLRRFASYRVVHLPRAGQLRAARFELLPSFGRPHFTVRVGDDGPVELGRLFEALGREEPNPYHGRGPGRR
Ga0247717_1003245Ga0247717_10032455F081578VSEPLAREELRPLLRDERPPSDAVVVVRGGPSSVERLREHARRTHDAYVLDGQPLWGVSVFCALDDVGTASIDTLLRRFASYRVVHLPTVGQLVAARFDLLPSFRRPHFTVRLEDDGDPSLTRLLDALGPPEANPYHGRQRQGRS
Ga0247717_1004179Ga0247717_10041791F089956MAIHELKLDALAQAGEQRRPVSGKDRLHKELVLVDQSQICQRQGERHTTHEQALAWLLLEPLN
Ga0247717_1005689Ga0247717_10056892F084524VPVETTIRLTGGPLANKTVTAGQVSVGSLIRLTRPAGRVAFYRVTWVEAVPNRTTFTGRATFEPKGDGG
Ga0247717_1006247Ga0247717_10062472F029668MLGLQIALSLLWGVSMLFFARQIVLGEPDGPHIEKIAMEGAAHMMLVFGAVLVWRAPQRARDVLLLMVFLNGLWTLTDLVYIPLLGLSEIDFYAKVIVNAFLAIGLALSSRRAGIL
Ga0247717_1006371Ga0247717_10063713F001870MDIGFILAIVALILGILMLVPGMWSKYPLAAIAIICLAVNQTGLLGGR
Ga0247717_1007487Ga0247717_10074874F001314MWVLFHVPCPTPEGRTAKELYEKRIPWLTDDMRADARAHGCRFHRAWYATDGSAFYALAYWETREGAREFYTRWRIDKESGERSIYLEGDVGLVPLPDLKDT
Ga0247717_1008948Ga0247717_10089481F103798AHGAEEQLALCAPDHLRRLEQPLKYGFADRSSARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEHPGAAAVPFTQYRLLHDFGWEESGKNARQALKRTLLNLQEARWEGEVNDSLTGRKTHEDHFGIIDRVLWPVVADGRVERLGYIFLGSWFLEQLRHEAGVYVDWELLRELPPIARKLYGLLENDRFEEGEDGEEWQAYWLGPPLFASVGSDCARERDNVAAVMRACEAIASHPKAPYRFSRERVACEGGFVQQLTVWRRPRPPARLGARPLAARRG
Ga0247717_1011741Ga0247717_10117411F063434MPVKIESFSPLSEEEFTALRQQKARKTDPAMVALLAEVEAGRPVRVPLVEGQSARGLRTAISRAATSRGLTVETVEGDGFVAVRKADEPRTRKGKSSSTQVGQRRRGRPPKRQGQDAAEGAALQDRAVGEV
Ga0247717_1012660Ga0247717_10126603F063248VGKKQDPLRTLLAGLPPALFLGNPPGTVAIMREKVVDAGGDPGEVLEWVREHGGYPDKTFGVRARQGFDMRPKAASKHYYVVPEDALK
Ga0247717_1016115Ga0247717_10161152F079855ISVRVRGTDGWVDLKGDRFLRTTLGLKSTLVRTNPF
Ga0247717_1017156Ga0247717_10171561F060873MPTIKLPEAGDHSAMVQKLDAMIREITKSQTMTPSMRAQGLRPSIMLVTQQELAHVMASRTILNQQKRMLALAVAAVRSAPYELYAHTRALQHEYGMDSGQIVELVATIAHTTSINLFEHAMAAFNDVAPMRALDQSTPVIQEVRSKLGEVPKYFLYMANDPGYCRLVLEREVATVHEGEVSRVNKELVAFATSMVNDATYSISHRADTLKSLGMTNEQ
Ga0247717_1018512Ga0247717_10185122F104646MATEAQLSSGPNPLCEIGRNHPRDRHRMRPLADHPGVWECPRHDLYATIVSEEVAATLDRGDPYAMHDGRPGVVVRHGDERGGGVILYYRAEG
Ga0247717_1020248Ga0247717_10202483F058115TKNALLGNSFFSMDRLKGYLDEEVDYDRCFHSEQELVFVVANLTAGREELRGNRTEHDVDTFRKVATAGYTIPILHPLVEIDGEQFADGGFLWNVPFEHAEAWGAERIFVLSVIPSELPPAESLRFIPQVATRMYDMFWRTFGNSSYLQKRVEDGRHDGVEVTVLEPSPETGMFDPVGMLNAHPGKSKKLLLQGYRDTEQALLGSR
Ga0247717_1020444Ga0247717_10204441F053149MRIVVWGSGIVESRMLWERAESTLDAQHLAETLSIAWDDIEGLDRWAVEIECPDPDDVLQLVEETSGDDAVLGWSPAPKEIPAAWFLADDAYHQGNDW
Ga0247717_1022601Ga0247717_10226012F001314MWVMFEVPCPTPDGRTAKDLYERRVTGISDEMRRDAREKGCRFHRAWYARDGSAFYALAEWETREGARAFFQKWDIQDEPGERAIWLEGDVGLVPLP
Ga0247717_1025156Ga0247717_10251563F031917MIDGVADLKLQHLVELSKLGDRCCHLEEEIESWLAEHDVVFDGHTIPFVLMPHFISPAQLKSVRRAVGCLSAVLDRLCDAYPEDA
Ga0247717_1026233Ga0247717_10262332F095087MSVDMDDDVVVVARVRLSLANGSGEEWMVPMQLTDDALSYHAVVYPPEGAVVVAVDPLKREGAARQDLVVAKADVATL
Ga0247717_1026824Ga0247717_10268241F010655VQVSQVAYDRFVVELPPADAEWRPLADPEVVAEMAAWLWDFGPAPLMAVVGHDGAAPPWLAAWQHRPVAWAPEGAPAGVAVVLSERAQLERFLSDGAPHEHTVLLWPRVSEAKTFEALAAGGAAWMRAVKAHARVTRVGELFEVTQVP
Ga0247717_1029927Ga0247717_10299272F067588MKKSHDLERERDDEREEGITEGRRGSPPAPSDRPENKPPHPQDVNEIGEER
Ga0247717_1030036Ga0247717_10300362F076730MPESIRHVGATASLNHDGAEDLDFAIVDLRLFALTDGGEQVDDPQPASTSVRCERVKLAALELSVQMSLRLRQAPTGARLEAWQRICDELAARGIETDPATLHHSTFRFVPDAELRDAQQMVWPQGH
Ga0247717_1030496Ga0247717_10304962F051753SVGCMDAPDADGEQLELTLGPLYLVVVDDRVNGPLTNRPARHYRSPPQSLDDARCLAALLLDRGDELEGDGPWRRPLAGGQRHVAIVLAPTARLG
Ga0247717_1031074Ga0247717_10310741F032127MTMTLDEALLALNDRLGHEVTAWVEVAHETPLLIASGLLENWSQETTGLPVEAAPAHFDLRGHYSIAEARFDLSEAPVESVSQRKDGLTFRIEGGARLVVT
Ga0247717_1034558Ga0247717_10345582F105434MATLTDRLRAAPPGIHGAGDEYWGLAWPALEWLEGELRTGMSTLETGSGASTMVFAAAGT
Ga0247717_1038670Ga0247717_10386702F066994MTTTTTSAEFGDRVRSVLAEQPTSGVIDRFAANDLLLDLLDVAHSEVEETRVMQALAELPKSNLVDRSDLNALLAGLCGQN
Ga0247717_1038968Ga0247717_10389681F043269MGPRSILLIVAVVLFLLAAFNVDLGELELIPLGLAAFAGSFLVGDRAINRR
Ga0247717_1042511Ga0247717_10425111F028883MRVPDRYLAGLREQGYLVFEGFLAADELAAAQESLWFHYPRPHE
Ga0247717_1045625Ga0247717_10456252F079738MTDEPIVAEPEGGGHRPTRPPAEMDDVIDMVWPESGLQTGCRVSSRPKDTLGEDDVVELEVDFVTLSLSPLEFIQLASFLRMSIDGLLERHPGLQRAVVNAFDIPD
Ga0247717_1046635Ga0247717_10466352F083539PYRQVIRRRRPPHEVLAAWIVTGPVGHLYAGVGDWAGVLVRYVRARGRLDRM
Ga0247717_1046992Ga0247717_10469922F102223MPGIDDPEKIDVIAEDADGSALLSIIQTGAWSKDGSERGRLKRKLGVYLRYALEGQMVAAYPSLRDKPVVIALMYEETPPQVLLDYWRRRGDTLARDGVTLTARSLGDTVWRA
Ga0247717_1052518Ga0247717_10525182F049815MASMPRVRRIRREAPVLDLLAATQRELRRGLSEQAARTVAYELFE
Ga0247717_1057808Ga0247717_10578082F001230VPSDADDAVRTAHEWFEVNSGWAPPDEDTLADWLADGVCRAPDDCMTEPEGWCQHGLASWWLVLRALGRSDPAP
Ga0247717_1059993Ga0247717_10599931F095096MRSWRLLASRLAINEVDVEVAYADVFVVLREGDATPGPNDWEATVRTAERQHLAPGTYELRVDTPDHVVLSGHAMLRFSDGHQHHFRGDGHLGGVEDALA
Ga0247717_1064388Ga0247717_10643882F014863VSGMTNPFAAPRTIRRIAARRVFERTDGKPVVLTIGVPRRVPGSDWGCALQITGLPNELRRPQYVFGIDALQALYLAMKRADAVLQAAKPRLVWLGEKGDLGLPKFLPELPKPQRDRLEAIMEREERKLLR
Ga0247717_1070238Ga0247717_10702382F000767GDVAASMNLEDQFDRLAREHHIAIFCSFVMDNFDGDVFTRMLPRLGQNHSHLIPVEDYARLERAVADALHETVGPDEASVLEDQLLSRYSAPFQMPRSQALLLALRESLPQVAGSVLTKTRNLYDGSRESIG
Ga0247717_1070252Ga0247717_10702522F015966MEPGSNFSLAGAGSVLIGATAAVIAVGIAVGWLLGSIAWGFLVGAVLGIPFGVFAVYKRYGHAF
Ga0247717_1074501Ga0247717_10745011F083984VLLAELESVGRSTPLLEEALHEAASPALRSEIHCRLAWATRFKPSSDHARAALELADELDDDVLRRRARAVQSILDWFAGEAEATEDLLVTLHDLPSAVGGEQLVREATLAVVNTLAPAARRDEARASFERDYREWQDRDEPRSSRALWGLAWIELWAGRWTLAADYAARARDISVQY
Ga0247717_1075329Ga0247717_10753292F025222MKRLEAMDPESRAFLCELYTQSEGDARRGVPYETLIDALGFDEAVTKRLQGRLQQDGWVELTTVPPMTHVGRPVTNRARRYCREQTISLTPQGIGLVEDTMAMRHTAVSQPSSSPDYTAA
Ga0247717_1078106Ga0247717_10781061F058771DMWGAQALMMTMTQKTLQHVMTDPAVDTTLTMVADTVGLTKEMATTIVASGLPLMANVADGDPWVFKAMFAQSIKYLPQPAPAFYAKLAKNAAARQALAAGFQLIFGPMTESIHRDTARHTNATAQQTSQVLAAIMPAAVKALGKANSNGNEMGFGRQLRNLNA
Ga0247717_1081004Ga0247717_10810042F007999MMSTPDGIAARGAQARNNLVVALRECCDLADAVESLEGQELLEVLVYLDSLRFVMAESGQLLQGVVRGFGERESD
Ga0247717_1081654Ga0247717_10816542F050234LMLEFPVIMALLDCWQRPPDHFTDGAQDRQAWMRWLAVAVVTVPVLLGYGIVLGYYFGVVQKNSPSSPR
Ga0247717_1084905Ga0247717_10849051F072063MVEDIVEALSARFGQGWAENTDANIRFAIEAERLLADLDDAHMIGEPELDEHHITLQFWVDRPISDLMTADQVAFDIFARISVEVFYSERRFVEGAIVYAFVTGSSRHGHSGSVV
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