NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028004

3300028004: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-W_N



Overview

Basic Information
IMG/M Taxon OID3300028004 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133410 | Gp0290875 | Ga0247705
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-W_N
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size60097731
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00591
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → hill → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5789Long. (o)-110.8512Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005923Metagenome / Metatranscriptome386Y
F020786Metagenome / Metatranscriptome222Y
F044388Metagenome154Y
F049823Metagenome146Y
F050290Metagenome145Y
F058115Metagenome / Metatranscriptome135Y
F076881Metagenome / Metatranscriptome117Y
F081174Metagenome / Metatranscriptome114Y
F083539Metagenome112Y
F098418Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247705_1000936All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album3707Open in IMG/M
Ga0247705_1003781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album1797Open in IMG/M
Ga0247705_1005050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1525Open in IMG/M
Ga0247705_1007277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1223Open in IMG/M
Ga0247705_1007692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1184Open in IMG/M
Ga0247705_1019507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium645Open in IMG/M
Ga0247705_1020681All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium621Open in IMG/M
Ga0247705_1020786All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium619Open in IMG/M
Ga0247705_1026191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059534Open in IMG/M
Ga0247705_1026234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium534Open in IMG/M
Ga0247705_1029231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247705_1000936Ga0247705_10009367F058115LTKNALLGNSFFSMDRLKGYLDEEVDYDRCFHSEQELVFVVANLTAGREELRGNRTEHDVDTFRKVATAGYTIPILHPLVEIDGEQFADGGFLWNVPFEHAEAWGAERIFVLSVIPSELPPAESLRFIPQVATRMYDMFWRTFGNSSYLQKRVEDGRHDGVEVTVLEPSPETGMFDPVGMLNAHPGKSKKLLLQGYRDTEQALLGSR
Ga0247705_1003781Ga0247705_10037813F020786MVTMALRATGHLTAWLVWHSSRVSLLEDLDEPQPPAAA
Ga0247705_1005050Ga0247705_10050502F050290VRPPWESEEAAFAFLLRVLVVCVVVAALAFVVKAVF
Ga0247705_1007277Ga0247705_10072772F044388VTPGAAASIRRVKIDGHYDEQADIAWLRFEGYDPGSVIAEETDFGLRELDRTGGRLVGLEYWRASGTLPAEFLRMLPAPPVGVAR
Ga0247705_1007692Ga0247705_10076922F049823MQPESASGGYAVARGVVPQHLIDDVLRLLHLDLLEQGHSAHTLGEWLWGMHWFPHLNHREEVLALAQSLPAQWRDGMLCDPQILLQFPHVGPEPRIAFHIDEEPPWADGRRYVRIVGVALTPWRRENGGLLVKDGDEAVAVELDPTDAVMLAPDLEHSGGVNRTGSLRYGVYFRWLQD
Ga0247705_1019507Ga0247705_10195071F076881VTRKTYRCPECYARVVGEPDDDAKTTLWLHSLSGRCRAKQTPKTEKPRRKERLEAMLGEEWG
Ga0247705_1020681Ga0247705_10206811F005923MERAADFVALGHAGSEHYAGLETFPNPGVAHVELTSDELVAVCPITSQPDFY
Ga0247705_1020786Ga0247705_10207862F098418MPGISRVRAMPWVMVFELALTLRRHWRRLEPAERAELAALIKKSQARPMRLDATERVRVRQLVAKLEPAQIARSVVPIGRRARNRRGR
Ga0247705_1026191Ga0247705_10261912F083539MRRRPPHEVLAAWIVTGPIGHLYAGIADWAVVLVRYARARGRLDRM
Ga0247705_1026234Ga0247705_10262341F098418VRVAARPMPAIFRVRAMPWVMVFELAVTLRRHWKRLEPGERAELAALIKKSQGRPGRLDAGERVRVRRLVAKLEPAQIARSVVPIGRRARRRGR
Ga0247705_1029231Ga0247705_10292311F081174VATRMYDVFWRTFGNSSYLEKNLEEGRYRGIEVTVLEPAAETGMFDPVGMLNAHPGKSRKLLLQGYRDAEQALHGGEPRSGRVRGSRPRDWKSDHPVG
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