| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027536 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114435 | Gp0111904 | Ga0209163 |
| Sample Name | Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 441029435 |
| Sequencing Scaffolds | 36 |
| Novel Protein Genes | 39 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 10 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 2 |
| Not Available | 12 |
| All Organisms → Viruses → environmental samples → uncultured Mediterranean phage | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: New Jersey, Arthur Kill intertidal strait | |||||||
| Coordinates | Lat. (o) | 40.58 | Long. (o) | -74.2 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012874 | Metagenome / Metatranscriptome | 276 | Y |
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F025653 | Metagenome / Metatranscriptome | 200 | Y |
| F027887 | Metagenome / Metatranscriptome | 193 | Y |
| F046145 | Metagenome | 151 | Y |
| F049072 | Metagenome / Metatranscriptome | 147 | Y |
| F054137 | Metagenome | 140 | Y |
| F061018 | Metagenome / Metatranscriptome | 132 | Y |
| F063816 | Metagenome | 129 | Y |
| F066901 | Metagenome | 126 | Y |
| F072364 | Metagenome / Metatranscriptome | 121 | N |
| F072483 | Metagenome | 121 | Y |
| F075046 | Metagenome | 119 | N |
| F078289 | Metagenome / Metatranscriptome | 116 | N |
| F082080 | Metagenome / Metatranscriptome | 113 | N |
| F088360 | Metagenome | 109 | Y |
| F092080 | Metagenome | 107 | Y |
| F093357 | Metagenome | 106 | Y |
| F097618 | Metagenome / Metatranscriptome | 104 | N |
| F098548 | Metagenome | 103 | Y |
| F101186 | Metagenome | 102 | N |
| F103505 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209163_1000248 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 125551 | Open in IMG/M |
| Ga0209163_1000394 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 87269 | Open in IMG/M |
| Ga0209163_1000535 | All Organisms → cellular organisms → Bacteria | 67092 | Open in IMG/M |
| Ga0209163_1000562 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 64826 | Open in IMG/M |
| Ga0209163_1000734 | All Organisms → cellular organisms → Bacteria | 50520 | Open in IMG/M |
| Ga0209163_1001292 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 29125 | Open in IMG/M |
| Ga0209163_1001783 | Not Available | 21031 | Open in IMG/M |
| Ga0209163_1007043 | All Organisms → Viruses → environmental samples → uncultured Mediterranean phage | 6324 | Open in IMG/M |
| Ga0209163_1007404 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 6047 | Open in IMG/M |
| Ga0209163_1014438 | All Organisms → cellular organisms → Bacteria | 3441 | Open in IMG/M |
| Ga0209163_1015467 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 3248 | Open in IMG/M |
| Ga0209163_1017640 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 2920 | Open in IMG/M |
| Ga0209163_1020554 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2591 | Open in IMG/M |
| Ga0209163_1022354 | Not Available | 2426 | Open in IMG/M |
| Ga0209163_1028247 | Not Available | 2007 | Open in IMG/M |
| Ga0209163_1028654 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1985 | Open in IMG/M |
| Ga0209163_1033202 | Not Available | 1765 | Open in IMG/M |
| Ga0209163_1035962 | All Organisms → cellular organisms → Bacteria | 1658 | Open in IMG/M |
| Ga0209163_1038720 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1560 | Open in IMG/M |
| Ga0209163_1040447 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1507 | Open in IMG/M |
| Ga0209163_1044150 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 1403 | Open in IMG/M |
| Ga0209163_1052206 | Not Available | 1222 | Open in IMG/M |
| Ga0209163_1063342 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium | 1041 | Open in IMG/M |
| Ga0209163_1063968 | Not Available | 1032 | Open in IMG/M |
| Ga0209163_1067086 | Not Available | 994 | Open in IMG/M |
| Ga0209163_1081313 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 852 | Open in IMG/M |
| Ga0209163_1083828 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 830 | Open in IMG/M |
| Ga0209163_1090829 | Not Available | 778 | Open in IMG/M |
| Ga0209163_1103044 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 700 | Open in IMG/M |
| Ga0209163_1104003 | Not Available | 695 | Open in IMG/M |
| Ga0209163_1105127 | All Organisms → cellular organisms → Bacteria | 689 | Open in IMG/M |
| Ga0209163_1129611 | Not Available | 581 | Open in IMG/M |
| Ga0209163_1134340 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 564 | Open in IMG/M |
| Ga0209163_1136500 | Not Available | 556 | Open in IMG/M |
| Ga0209163_1137505 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans | 553 | Open in IMG/M |
| Ga0209163_1137725 | Not Available | 552 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209163_1000248 | Ga0209163_1000248128 | F072483 | MKGYVSVHKVGDRQIFANTAKFRIYARLQGFISEGFFHNGQSALDATFALLAALNAPHIDYIFDMRFSEEFPRDIFQMWKEKALENLAKYPEVNVVGVTHHDSPLWLQISEWKELFEKHGDRILGTFDTPEEAEAFLDRLRNVKAQ |
| Ga0209163_1000248 | Ga0209163_1000248146 | F097618 | MSEEKAQKLTEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMQKAA |
| Ga0209163_1000394 | Ga0209163_100039473 | F072483 | MLHTMKGYVSIHKIGDRQIFANANKFRIYCRLHGFISEGFFHQGQSALDATFALLHSLNAPYIDYIFDMRFSEELPRDIFQLWKEKALETIARYPHVYVAGVAGEDSPLWMQVSQWKGLFDKHGDRILGIFETPEKAEAFLDGLRNIAE |
| Ga0209163_1000535 | Ga0209163_100053510 | F063816 | MESVELKLREIENGEFVVAYTRKIVEILGEPEMSLEVKEGQISEDVSRLVESLGYQIAAKRPMHGWIRLTAVKPHK |
| Ga0209163_1000535 | Ga0209163_100053554 | F054137 | MMYVVRNRYKESLKPADFPKVNKLIDEGIIPAMEKVQGVRSVRAFNGLSGEVILLVEIDELAAIDRALVDEEYGRIAAGMFDYMVRVGGEVWYDRGSWAKCYGRDTTTQGRP |
| Ga0209163_1000562 | Ga0209163_100056222 | F101186 | MLSENQRKLFSEFHKSIEAEGILDEKTSHLIKVAAAMAIGCYP |
| Ga0209163_1000734 | Ga0209163_100073436 | F072364 | MADWIEDLGAADGISGNSVKLILDGVPVLALQNFNWKIKKDKKPLFGAGYPQAHGVTRSIHKTYEIDFEVKEVLVNSAITVAQTAKNAALLAPYEDWTDIRNATIIVLYPGAAAARSKTFKGVEITGCDGGFADGEDADPIGMKITGFATAATGLF |
| Ga0209163_1001292 | Ga0209163_10012924 | F063816 | MESVELKLRLIDNGEFVVSYTKKIVEMLGEPELSLEVKAGQISEDVSRLIESLGYQIAARKAMDDWIQLKAVKPSK |
| Ga0209163_1001783 | Ga0209163_100178313 | F072364 | MADWIEDLGTADGIAGNSVKLILDGVPVLALQNFNWKIKKDKKPLFGAGYPQAHGVTRSIHKTYEIDFEVKEVLINSAINAAQLAKNAGLLAPYDDWTDIRNATIIVLYPGAAAVRSKTFKGVEITGCDGGFADGEDADPIGMKMTGFATTATGLF |
| Ga0209163_1007043 | Ga0209163_10070439 | F072364 | MADWIEDLGTADGIAGNSVKLILDGVPVLALQNFNWKIKKDKKPLFGAGYPQAHGVTRSIHKTYEIDFEVKEVLVNSAVTVAQSVKNAGLLAPYEDWTDIRNATIIVLYPGAAAVRSKTFKGVEITGCDGGFADGEDADPIGMKMTGFATAATGLF |
| Ga0209163_1007404 | Ga0209163_10074046 | F046145 | MLQVCLNFYWKLFEWITDRYEKTIPDLLECDHMALQPKPFSEAKTGFFIMSRYLRVLSEK |
| Ga0209163_1014438 | Ga0209163_10144384 | F072364 | MADWIEDLGAADGIAGNSVKLILDGVPVLALQNFNWKIKKDKKPLFGAGYPKAHGVTRSIHKTYEIDFEVKEVLVNSAVTLAQTAKNAGLLAPYEDWTDIRDATIIVIYPGAAAVRSKTFKGVEITGCDGGFADGEDADPIGMKMTGFATAASGLF |
| Ga0209163_1014957 | Ga0209163_10149571 | F049072 | MVRMLLVLAAIVVIVAGLGFYMGWFHFSSGRDDKGAHVTVSVDKDQIQEDTDKAVDKVQDLGEQAKDKVETTTQKAQD |
| Ga0209163_1015467 | Ga0209163_10154674 | F046145 | MMVFRKLQVCLNFYWKLFEWITARYEKTIANWLECDHMALNSKTFSEAKTSFFIMSRYLRVLSEKI |
| Ga0209163_1017640 | Ga0209163_10176403 | F078289 | MKKTVIIFISLFLVFPLYGFNSLVRHEDVQKMRELGISREVIQYFISNQTSSLSSEDVIQMKQSGLNNDDIISAIQSDLYRPKQAPTAIEEAELVAKLKGTGMSDEAVLQFLQTVRSTRRVDSNGNISKQHTTESQRTPYPTTGATFPMPENYGYDHLNGRYFLFVTPQN |
| Ga0209163_1020554 | Ga0209163_10205542 | F046145 | MLQVCLNFYWKLFEWITDRYEKTIPDLPECDHMALKPKPFSKAKTGFFIMSRYLRVLSEK |
| Ga0209163_1022354 | Ga0209163_10223542 | F092080 | MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMDNLIESLQADLGQNQREAAKKRVLNILVKEKPLGNWEDVHRERTDADACRA |
| Ga0209163_1028247 | Ga0209163_10282472 | F020363 | MWRWRRVAVARVFALVVRCRIIQLVVYSRVGKNRDTRRESPAGAGAARTADHLTVLFSQKVLAVRSANDIYRPVSTRIVLATVPIVTYDLKFE |
| Ga0209163_1028654 | Ga0209163_10286544 | F046145 | VCLNFYWKLFEWITARYEKTNPDWLEYDHMVLKPKPLSEAKTGFFITNRYLRVLSEKI |
| Ga0209163_1033202 | Ga0209163_10332021 | F098548 | VLLNPEERKVLSIEINGQKIKPEDVKEINIPEKNDCVWEFIFRDDSTINATGNVIVKYI |
| Ga0209163_1035962 | Ga0209163_10359623 | F046145 | MLQVCLNFYWKLFEWITVRYEKTIPDLLECDHMALKPKPFSEAKTGFFITSRYLRVLSEK |
| Ga0209163_1038720 | Ga0209163_10387204 | F046145 | CLNFYWKLFEWATARYEKTFPDCLECDHKALKPKPFSEAKTGFFITSRYLRVLSEKI |
| Ga0209163_1040447 | Ga0209163_10404471 | F066901 | MKNPREAQLAWQICKLISELDTLLLNLYWDEFEAIYERQETEKHWRSIIHKDKHTLQ |
| Ga0209163_1044150 | Ga0209163_10441501 | F046145 | MLQVCLNFYWKLFEWITDRYEKTIPDLLECDHMDLKPKPFSEAKTGFFITSRYLRVLSEK |
| Ga0209163_1052206 | Ga0209163_10522061 | F046145 | MFQVCLNFFWKLFEWITARYEKTIPDLLECDHMALNPKPFSEAKTGFFIMSRYLRVLSEK |
| Ga0209163_1063342 | Ga0209163_10633421 | F075046 | MDVESRVEVKDKRKIQEIFERLVSKNMELKVLMDEQSVRFMSRAIRLNPEEISSLGSEPELIIEKLFPEAGNGLIQSSSEITLEFTIKEHFCRGKAKYVGMSDEYPYFGIMVTLPRSLEATKERRRERRYNYEMPDFVSVEFSIMGKDKVYELGVIDCAMHGLGILITRRDFDLLRLVKPGDRIRDIVLYSENAMIKVDGVVRHLTQMSGGKHKDSYVMGIESPEVIESCKIASEPEGE |
| Ga0209163_1063968 | Ga0209163_10639682 | F082080 | SKIMCETSGLMTDKEAARLYRLEDIGVSLWGYWGTERTGQPRLTSRLSREIIEHFTCYEQGPFLYRDVGKGSIMLSLPTLEIAGFNLVSVTESEEGPVLVAIDGNDRETWEYAVWLYRLVRRIYPSRGKGGKPGQISWKIVANWLREETGLFQQFVELLVERKLTRWEQEQEGIAITDKDRKWARQDALLEIKRGLARAGLKLADLKKSDKNQ |
| Ga0209163_1067086 | Ga0209163_10670863 | F103505 | MDPLVLREYEAKVGDWLAQGYQILADDVDGELRLTVHYVSREDGVASEREQEYWPMTAEIVQLLAGNGIVISRALAGPRPWPGPHPEAR |
| Ga0209163_1081313 | Ga0209163_10813131 | F025653 | MQKSGQEVIGMSDPMKYFETKLKEMSLSELNAYKKRLDDSIQQKILATAPNEQIAPLILYRGILEHEIKTRTSQK |
| Ga0209163_1083828 | Ga0209163_10838281 | F046145 | MLQVCLNFYWKLFKWITDRYEKTIPDLLECDHMALKPKPFSEAKTGFFITSRYLRVLSEK |
| Ga0209163_1090829 | Ga0209163_10908292 | F012874 | MPAKAGIQNHMKSLDSRLRGNDAKGVFSTFYETITVDHPGRYGFM |
| Ga0209163_1103044 | Ga0209163_11030442 | F061018 | MNFYGLGERNNFCVSNQKAPKDEWTEIIDRVEAAILMSLANKVLADAVDRQDQIDEHRRRLKLVELKDFSRRNSAG |
| Ga0209163_1104003 | Ga0209163_11040032 | F046145 | LFSFLKQICFWKLQVCLNFFWKLFEWITNRYEKSIPDWLECDHMALKPKPFSEAKTGFFITSRYLRVLSEKI |
| Ga0209163_1105127 | Ga0209163_11051272 | F046145 | WKLFEWITDRYEKTIPDLLECDHMDLKPKPFSEAKTGFFITSCYLRVLSEKI |
| Ga0209163_1129611 | Ga0209163_11296111 | F088360 | AIWIISWAWRRSRAWNRRLPSMTRHDRQFIVRLSVILFLLAGIAWQIYEAVYAVQSPSVQLGGFAAGDLAALPVLLFPPALFFAALALEFSPGAHRVAWGLVAFLAGAGCVYSLATATLGTAGNLNLSYYILLGVLALVSAPRAFASSRTGWSRRGSPYYS |
| Ga0209163_1134340 | Ga0209163_11343402 | F063816 | MESVELKLREIDNGEFVVAYTRKIVEILGEPEMSLEVKAGQISEKVSRLVESLGYHIAAKRPMDGWIRLTAVKQTK |
| Ga0209163_1136500 | Ga0209163_11365002 | F046145 | VCLNFYWKLFEWITARYEKTIPGWLQCDHRVLKPKPFSEAKTGFFITNRYLRVLSEKI |
| Ga0209163_1137505 | Ga0209163_11375051 | F093357 | MERIIQKKMKKFDQAWRIKRLLAERGETISSLSRKIDRPCGSVANNIYGYRANTNLQKEIAAFLGQPVTEIFENAGLQAGR |
| Ga0209163_1137725 | Ga0209163_11377251 | F027887 | MEQKGYQVVESEERYFVVDEGTLASQKKVTPNLIEGEVKIIQLTVQDCPLKVCCIELEGNPGEEVTSICKYLGNYHYIRATVPCLYNGYFERDLLKLVPDPASIRAKYAKTRFLPSVNPIKKSHAHLVCGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |