| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027451 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072122 | Ga0207599 |
| Sample Name | Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K3-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 10012385 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 27 |
| Associated Families | 27 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| All Organisms → cellular organisms → Bacteria | 6 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 10 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 42.4 | Long. (o) | -85.37 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004455 | Metagenome / Metatranscriptome | 437 | Y |
| F007864 | Metagenome / Metatranscriptome | 343 | Y |
| F009013 | Metagenome / Metatranscriptome | 324 | Y |
| F010102 | Metagenome | 308 | Y |
| F010291 | Metagenome / Metatranscriptome | 306 | Y |
| F013378 | Metagenome / Metatranscriptome | 272 | N |
| F014010 | Metagenome / Metatranscriptome | 266 | Y |
| F015112 | Metagenome / Metatranscriptome | 257 | Y |
| F015357 | Metagenome / Metatranscriptome | 255 | Y |
| F016898 | Metagenome / Metatranscriptome | 244 | N |
| F024345 | Metagenome / Metatranscriptome | 206 | N |
| F025063 | Metagenome / Metatranscriptome | 203 | N |
| F028223 | Metagenome / Metatranscriptome | 192 | Y |
| F031553 | Metagenome / Metatranscriptome | 182 | Y |
| F035753 | Metagenome / Metatranscriptome | 171 | N |
| F042196 | Metagenome / Metatranscriptome | 158 | Y |
| F051250 | Metagenome / Metatranscriptome | 144 | N |
| F055232 | Metagenome / Metatranscriptome | 139 | Y |
| F068808 | Metagenome / Metatranscriptome | 124 | Y |
| F070676 | Metagenome / Metatranscriptome | 123 | Y |
| F073509 | Metagenome / Metatranscriptome | 120 | Y |
| F078690 | Metagenome / Metatranscriptome | 116 | N |
| F097291 | Metagenome / Metatranscriptome | 104 | Y |
| F099252 | Metagenome / Metatranscriptome | 103 | N |
| F103541 | Metagenome / Metatranscriptome | 101 | Y |
| F104058 | Metagenome / Metatranscriptome | 101 | N |
| F105479 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207599_100067 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2173 | Open in IMG/M |
| Ga0207599_100209 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1544 | Open in IMG/M |
| Ga0207599_100213 | All Organisms → cellular organisms → Bacteria | 1527 | Open in IMG/M |
| Ga0207599_100255 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1464 | Open in IMG/M |
| Ga0207599_100260 | All Organisms → cellular organisms → Bacteria | 1459 | Open in IMG/M |
| Ga0207599_100262 | All Organisms → cellular organisms → Bacteria | 1453 | Open in IMG/M |
| Ga0207599_100437 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1197 | Open in IMG/M |
| Ga0207599_100495 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1137 | Open in IMG/M |
| Ga0207599_100726 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 978 | Open in IMG/M |
| Ga0207599_100786 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 939 | Open in IMG/M |
| Ga0207599_101071 | Not Available | 816 | Open in IMG/M |
| Ga0207599_101147 | All Organisms → cellular organisms → Bacteria | 788 | Open in IMG/M |
| Ga0207599_101347 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 730 | Open in IMG/M |
| Ga0207599_101358 | All Organisms → cellular organisms → Bacteria | 728 | Open in IMG/M |
| Ga0207599_101429 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 704 | Open in IMG/M |
| Ga0207599_101472 | Not Available | 693 | Open in IMG/M |
| Ga0207599_101483 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 692 | Open in IMG/M |
| Ga0207599_101656 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum | 655 | Open in IMG/M |
| Ga0207599_101679 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 651 | Open in IMG/M |
| Ga0207599_102026 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 595 | Open in IMG/M |
| Ga0207599_102181 | Not Available | 573 | Open in IMG/M |
| Ga0207599_102385 | All Organisms → cellular organisms → Bacteria | 551 | Open in IMG/M |
| Ga0207599_102433 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 547 | Open in IMG/M |
| Ga0207599_102511 | Not Available | 540 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207599_100067 | Ga0207599_1000674 | F073509 | MLAQEAPLIEQGAVHFILFGVTVIVIFIALWITIAK |
| Ga0207599_100194 | Ga0207599_1001942 | F099252 | MSDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGM |
| Ga0207599_100209 | Ga0207599_1002094 | F009013 | ACRAMMGELEAVVVEVKPWDVHGVGYVDVTVVYPDRALETARLGPESVPEDLEAGEAVMVTKAVNMIVGIRRA |
| Ga0207599_100213 | Ga0207599_1002131 | F007864 | MVVCPTCREVNEEGRAICQKCGSSLTPDAVALLPRREPGERPPIEMRKPPQPSKWRPLILLGVFLVGLTAVAAFFALRPDPCGDTNFESENFGYCLMVPDGWEAGPAQFGADVTLDQFAPPTGSATVVVEAVDLETGVALDQWSEFVRKRDEDAGLTPGPASDAKLGGADALQWDVSVASEGGNSFLMREVVVVSNDVGWRVTLNDLQEGFDTSAVAFRDMLDSWQFA |
| Ga0207599_100255 | Ga0207599_1002552 | F004455 | VPSVQGLSKAQANYRKAENPKFRCAECKFMFPRLSIGGCRYVRGVIHADDICDEFKPRDAGGS |
| Ga0207599_100260 | Ga0207599_1002601 | F078690 | MMRDHTRIEELIAIRSIGGLDPQEQAELEREMASHGPDCEECRRLENEYGEVAGRLAFALDPVALRPGFAGETIGLALGEAPASRPGRRGGPWRPLVAVAAAVVLFVGGTVLGAAVFGGG |
| Ga0207599_100262 | Ga0207599_1002622 | F010102 | PGACRVSPGEVALMGNVSEAAVRAAVVRLDPDAVVLDVSDGWIVHSLDGPGSREAFARLSELELPAAGSLVGELAGVGVRILVDGDRIDLLVPSMIAAHVRERIEVDAAELLR |
| Ga0207599_100437 | Ga0207599_1004373 | F068808 | SPPAPSPSPASGIGGGGIDVASAEPDQTVYQAFAVTADGFDTLDQMELYFLTGDPIVDVVIDDPARLDGNPARLIVADIDQGGEVSSSVAAAMTLGDGATGYLVVAIFPPGGWEDERADFERILRSFQTDVPPGLETFPVDDQAS |
| Ga0207599_100495 | Ga0207599_1004952 | F097291 | AAAIVCFCLALVTAIVFSVIGVLERHSARQRSAVTAAPPRRRKKDQVPDENAPAYLHPSFKDEVAARRQVEEELMAIQHERDALAARVQRLEAELDGLKTRSSV |
| Ga0207599_100677 | Ga0207599_1006771 | F105479 | ADHGQCPEIDANGGVRIDPIQLEEDLNAEFGTSVFGLVQMVAPSEVYLNQKALTDSGLSAEDVAAFLADYRYGDNIGPYIRPAAVRRDRLHERSFAAVLPVSYIGELASTDLARFGATAYDDADPDGLPVVTW |
| Ga0207599_100726 | Ga0207599_1007261 | F014010 | MPLMFVAVLSVLVGCAVYLGTVRGQRPPSATGFGEPDQDQAVEAIEPGAPPPGYAYLQVSTQGPGLRDRLQGLVGVIMLLAVGAAALAFALYEFGHLINRMIEAFLD |
| Ga0207599_100786 | Ga0207599_1007862 | F042196 | LNEAASRRINEGIEQAHKGDPPGRRMTITCECALKSCDRLIEITTPEYQEVRSDATQFAIVPEHLIGDIERIVFENDRFVIVAKRAGTPADVATETDPRS |
| Ga0207599_101071 | Ga0207599_1010712 | F031553 | TYLESEMTLSFSTALARPIVLAILAVALAACTSRTQPAGMESMMRPIANGTPTGSPNAIVLRGTFVKLTGFPCHRSDPYVGGETVTFGGSDGSRTTIVTGSANWIGLPATPSAPLGQCRQVAPFTAELPPAARYVVLINDRRLPAVTLAELRAGGLRHTFRLPS |
| Ga0207599_101147 | Ga0207599_1011472 | F010291 | VSPRRRRLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWRSPDLEPEWDACSRGLDQSLALADRVRTVGAHPEGFEGLIGLIGDLLAPLDPFERAATRF |
| Ga0207599_101269 | Ga0207599_1012691 | F103541 | VLAVFVLAGGGLAHPQFLLLCLAILLVAAVLAWRHDRREAFRLAAAALGGGAVLGIGLLAVRPGAPPLEVDTSKDAFLRRAGLTSELRSAYLDRFVQRWTRYVQWVSVPLAALGFTSPSGNAGRILRSWFLLTFVGVAFALVTGSLPADRFVTFGFAIPILAALGLVRLWHRLERRRTLAVVVTSALALAMLAGSAIAWNRQEPFLSDDEVRAVTFANDDVSSLRAGTPLAFWVNELDDTVSFLATRAGN |
| Ga0207599_101347 | Ga0207599_1013472 | F035753 | MGTLALILLPAFAFVAVVAIVLTYRRQRTLEPERPWWGMPGTWIGLSMVFVLLGVFAFPRLLGFTFVFFPFLVMRSAGRGRRNRRDRRD |
| Ga0207599_101358 | Ga0207599_1013581 | F070676 | QSWLAAERGGYREVMASKTKESKKSKDPENSSVVTTLGESALTGLPGKIGGAVAKPVSKRTKWSEQQIRTAIGLALLAWALYRVLRPTVRAVRNR |
| Ga0207599_101429 | Ga0207599_1014292 | F015112 | MEFEEALATLGFHPATGRTPKGVQVMTAEPNPFLTYTVQKLEDGTALFSWEFAVGEYLRTKGIQFGSDETLNQFMFPREDTRGPQDGTWLIEA |
| Ga0207599_101472 | Ga0207599_1014721 | F051250 | MTSARFLWVVVAGSGHSSEPRGLTEDLGDAMAKVNGYTERLRRKGRTDWFGVVLDLDQPTVIAPPGSTQPILGWERVYFVDG |
| Ga0207599_101483 | Ga0207599_1014831 | F013378 | MRRFAMVLMAAVVGMLAAGLTSAFAGTGIAQEETVVFGEHTLKGRNLDLVGDADDFRPGDRYIFRSELTDAQDSVAGHLFVDCSVHFAKKDSCSQIYEIPARGTVTAEGLIPVSQLKVGGTWVLAITGGTGEFENVGGSATVEIVDDTGNSEHTLHLLP |
| Ga0207599_101656 | Ga0207599_1016561 | F055232 | AGLWDGSLDVARLQVPLASKEKKLRIETQLKLDGVRSQSIINSFSEARKQPAVVPLNWTGVWRISGLAEIPVDQPENFRWNGDAALGGELVYASGQTNIALQKPTFSVRVEEHAVTISDLKAGLWEGSLDVARIQVHLPSKEKKLRIETQLTLNGARSSSVRKSFSAGQKQPRVVRLNWNGAWRGSAAGEIPVDQPENFRWHGEMALGGDLFYASGE |
| Ga0207599_101679 | Ga0207599_1016792 | F028223 | MRRLNFLDDEPWDEVEDDVKRRWFGHAFETDMLGASLTELQPGAPDSPLHLHYGVEEMFFVL |
| Ga0207599_102026 | Ga0207599_1020262 | F104058 | NGDEEQAKLAALDTIADADERVRLKRIDVGRREVTVVLVVHADTLVVGRIPFLDDLGRVTVSGSTAVPRD |
| Ga0207599_102181 | Ga0207599_1021811 | F024345 | MRRNLFVATVALGLVAVGARGVIAGTTTGRTPVDCIDTVWRTSTVSTSSTSWRAVPGLEADPTAIFPITVDVSALVSGAPALFRILSTNVGDQTIVSNPGPTRFHPGAGSPNSFSFQWVERDDVASPHANLIRLQWRSPSGAPVSMLRGDMAVLYRTDGC |
| Ga0207599_102385 | Ga0207599_1023851 | F015357 | MTYRTFRRRLSEATAAHDWLEGLAFVLGLAFLALAVLCAWGLATGIANIGDSEAPPGAPTTVGFLEVTRGFAIVLFALFGFIAFGVGWFL |
| Ga0207599_102433 | Ga0207599_1024332 | F016898 | PLSPLLAGPHVNLEVMTMADTLAPTPVKWLYCFACEEPFELAGSDGSCGCGRSSVRLDGGIVEIQGPTRALAPVETVIRLDGGEWAPLPEDVFIRRVLPRAA |
| Ga0207599_102511 | Ga0207599_1025111 | F025063 | GCAPVRIRLVTVLTEKVEWALDDPGFCGPILSLSRSQAATYFSAASGDRLSVYLTGTVGIPHLTFEGVGMLSASAPAAFLLRPDASPRTSSGASREAGTMLGWKGVGGPVTVGDGEHDLAVDRILAWSADGARVALVGTMGARSGVFVLFAGSGSGPRVPRYVMPAGRTIDGTFDAVGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |