NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027410

3300027410: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027410 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0055678 | Ga0207541
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31302445
Sequencing Scaffolds27
Novel Protein Genes31
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
Not Available11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F001592Metagenome / Metatranscriptome667Y
F002066Metagenome / Metatranscriptome597Y
F002861Metagenome / Metatranscriptome525Y
F006629Metagenome / Metatranscriptome368Y
F006823Metagenome / Metatranscriptome364Y
F009496Metagenome / Metatranscriptome317Y
F015863Metagenome / Metatranscriptome251Y
F018629Metagenome / Metatranscriptome234Y
F019338Metagenome / Metatranscriptome230Y
F029488Metagenome / Metatranscriptome188N
F037911Metagenome / Metatranscriptome167Y
F038225Metagenome / Metatranscriptome166Y
F038471Metagenome / Metatranscriptome166Y
F045890Metagenome / Metatranscriptome152Y
F048216Metagenome / Metatranscriptome148Y
F051505Metagenome / Metatranscriptome144Y
F054393Metagenome / Metatranscriptome140N
F055839Metagenome / Metatranscriptome138Y
F056121Metagenome138Y
F062521Metagenome130Y
F063987Metagenome / Metatranscriptome129N
F064158Metagenome / Metatranscriptome129Y
F078804Metagenome116N
F079360Metagenome / Metatranscriptome116N
F083399Metagenome113N
F085355Metagenome / Metatranscriptome111Y
F088977Metagenome / Metatranscriptome109N
F095446Metagenome / Metatranscriptome105N
F096820Metagenome104Y
F101962Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207541_100187All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1321Open in IMG/M
Ga0207541_100311All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella1181Open in IMG/M
Ga0207541_100554All Organisms → cellular organisms → Bacteria1039Open in IMG/M
Ga0207541_100718All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium979Open in IMG/M
Ga0207541_101055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis888Open in IMG/M
Ga0207541_101089All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
Ga0207541_101751Not Available780Open in IMG/M
Ga0207541_101914Not Available760Open in IMG/M
Ga0207541_102298All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium725Open in IMG/M
Ga0207541_102603Not Available701Open in IMG/M
Ga0207541_102922All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria679Open in IMG/M
Ga0207541_103515Not Available644Open in IMG/M
Ga0207541_104073Not Available618Open in IMG/M
Ga0207541_104189All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium612Open in IMG/M
Ga0207541_104445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium601Open in IMG/M
Ga0207541_105050All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium579Open in IMG/M
Ga0207541_105160Not Available575Open in IMG/M
Ga0207541_105478All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium566Open in IMG/M
Ga0207541_105595All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia562Open in IMG/M
Ga0207541_105714Not Available558Open in IMG/M
Ga0207541_106239Not Available544Open in IMG/M
Ga0207541_106365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia541Open in IMG/M
Ga0207541_106540Not Available536Open in IMG/M
Ga0207541_106632Not Available534Open in IMG/M
Ga0207541_106907All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia527Open in IMG/M
Ga0207541_107518Not Available513Open in IMG/M
Ga0207541_108046All Organisms → cellular organisms → Bacteria502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207541_100187Ga0207541_1001872F019338MPAGRRTETVLTAGAVACLAFISIGQPVFAQDVDPRCKDIFDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207541_100311Ga0207541_1003111F000268MLMRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGGGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFASDGHGGTSGVTFGFDKNGRMTFPDSFDQ
Ga0207541_100554Ga0207541_1005541F018629KTQIRIIKQGMAGSIPESQAVSEERQKKDAMAELICSVSGWVAEFKGRRRPDPRITFQTLFKEA
Ga0207541_100718Ga0207541_1007181F045890VGEYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207541_100718Ga0207541_1007182F063987LKAPREDGSSFRADLEQSTPNERRFMNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVQAESPDSMAGTSSADTSKLVIGPSSASVALAKASLIVSPLTHR
Ga0207541_101055Ga0207541_1010552F079360MRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTL
Ga0207541_101089Ga0207541_1010891F054393ICFQIFAFGVLFPMSSQWVSASYQLFFWSYWSCAAVNLILGFMVIYEIFLDVFRPYYTLKDLGSVLFKWAALVMSLVAFVVAASSPTGDQGPIVQAVITVTRCVRVAQVGLILFLLVFSRYLGVSWKQHSFGLSLGLGLAAGVELGTLAFHVSGHASEVLVHMINLVAYNLSILVWLGYALRKSPERAPGAELFVPNRWEKSLTDIQSPAQVDSLIPMFENMVDRAFSRTQADYSPKEGAPDAVVQPALSTRSGIHSLPSPSRRVH
Ga0207541_101579Ga0207541_1015791F101962LRVSVSQTVIAATLVFVAGCHAGAQIGSRPAGPRWSYAFGAGGFVQGNGKAIQNWLSANAYGATEPRRCTFDILFRAICDDPVGYPKGSGGAFAAMGSVRRNFSDGAALELFMSMEQSGDVTGRCDDLAAPKDPRCTNRFLEVSFGGASFSLLGEISRGWLHLGAGPALLLANWDMTPSHLAGVWFDATIERDPIPVFLRGQYRYYASTSLAPSKGFSGFHPSSLFVGLGLRTRLNNGG
Ga0207541_101751Ga0207541_1017511F015863MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATD
Ga0207541_101914Ga0207541_1019142F056121EIQRLFVGTWSSPVAIILKAIGFRLATVEAIYRSRLSDAEVIRDDLFQTKAEFIALRRPTAERIVRFYCARKATNSSNLS
Ga0207541_102298Ga0207541_1022981F062521VSPAWGYLAWRSLPVVLLLAWFLLLIGGFSLGGLIHLILLAAIGV
Ga0207541_102603Ga0207541_1026031F037911MRRHIADSRASTNFLHHPARSLRRLISLLSTFGAVAGVQLQTSRSIKPRERDLGDLRLFVWFGF
Ga0207541_102922Ga0207541_1029221F095446TRFRAAINQSLVYANSHPDEIRAMLPAAIRNIRLPTWSPLVDRVQLLNLAKLAKKYGAITTLPNMTKFVPSFVEGGRTLQATVGQGAFLTLRLDGRIVTRLRAGKYTVAVADRSTRDNFHLVGGSVNRATNVAKRQNATWILDLKTGVYHYSSDGAAKRKGSFRVS
Ga0207541_103351Ga0207541_1033512F096820ARIADVSAGIQEHLDRADASNALLREAAARLAVSRARLDVQLQAIREARHVMRRLLWFLPGV
Ga0207541_103360Ga0207541_1033602F064158LLFRPPFFAAFLPLDLDDLREDFRAEDFLPPFFFVAILSPGLVIGCKLLQGETCSVSDANYSPARRKQ
Ga0207541_103515Ga0207541_1035151F088977YIALMRSSVGGLPPVATSTLQGDLQDGVALAIRYGYVPSSSRMDLPSMNNFGLTAVLPTGTASTVSITGGLSSLSRGGSDAWIIGAGGDLRLTDWAFSQGRSAPHLRVAVNGQLDYSKPRESALIAGSVGLPLSIIRPNRPKQEMQVVPFVTPSFAFGNFNPDDDTGLSHESGARFMIGGGLGLYNRSSSVAVNFGFQYVAVENGQVQLGVVLT
Ga0207541_104073Ga0207541_1040732F085355MDSLKAALTSVKDLLDWLPDLVVALLILAIAVLFALALHRWARKLVRRAIAGRYPFVFSVFT
Ga0207541_104189Ga0207541_1041891F002861MQQIKPRGANFEARTVKDIIEPAKSISNQVSVRAALDQMHAEATDSSPVVDQCGELLGILSKNKMNRNVGGFGHDP
Ga0207541_104445Ga0207541_1044451F009496PYDWINVLLYGKSIQAENNVNYSYFNSPKWNSKMEKAARLVGPNRLKVYGQLDLDIMNQAAPMAIERTYNNRYVFSNRVNPKSLVYQGIYQDFSINAMALK
Ga0207541_105050Ga0207541_1050501F048216MSPSALNPTTEVIKVVCLMSLEEMPRDVKALEERIIEKVQQSGREFYAAVFYAFQRRWLQERGGDYTAVRWRTIDQVTPFGLIGLPVRVVRERGAQKGGYLSLSKALLKPKATRLLSPWVEKGVLEAATCSNYRPAAAELWRWVRVKVSAWLIWKCVQFHGARLCEQ
Ga0207541_105160Ga0207541_1051602F006823LLKANDGSTWEVKSSNVALADHVGHTVTATGVVSNAKMHNMKEDAKDAAKDSGMTKSNEEHGHLKVTDVKMVSDSCQQ
Ga0207541_105478Ga0207541_1054781F051505MTMRSAASLALLGVALAAILLVVGFFLDLLNALRGLVPALRLVASFIYAFAAVTAVVFL
Ga0207541_105595Ga0207541_1055951F001592MPIIEKTIRFAAIALAVLFIGLSLFGIFGAWFVDGKAADVALKGFGLIEVGIGVVDAGVSRVDDLIGTSRTEVRQASETITAAGAQAQANGPVLNALNERLETSLTPRIAQMQQVLAPVRDAMGTVGNAVSLLNSMPMMADRAPRLAALDDTFNRLEGLSADATQLRGTLRALVVEQKSD
Ga0207541_105714Ga0207541_1057141F083399MVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAVGDAMSWLAGRSVVDRFQTDIYQAANSVGQL
Ga0207541_106239Ga0207541_1062391F038225MKRFSLALLGAVGAFFVLTPAQAADYRVIQYNDTKICQVVDMAGPFKPISSNYTVLTKKSIPTFDAAMKARADVSKKAKCTFL
Ga0207541_106365Ga0207541_1063651F038471GENAIIVWTHLRLDQPTHRDILAVAMEGGSDHARLFRWWNPRHHLIGKAQ
Ga0207541_106540Ga0207541_1065401F078804LNFANIILRPLVAFALCSVIAPAIGHAKEKAQSSRQAANKAVKKQASVFDSDGYRLVSPNSTMRCAQTLRGTLDCK
Ga0207541_106632Ga0207541_1066321F055839MKQLLFASALILVGSNVAKAAEINFGEVRTRYQIQNELTAWERLHPWDVDWRHTTLWQHGRALRTEFAPPGCTITRLVTTRSGTRLEELFIC
Ga0207541_106907Ga0207541_1069071F006629MVKVMGMLTLETVPGLNRHCRNALVAALSRIEFPVLDATLQPLTLPLPESTVQTI
Ga0207541_107518Ga0207541_1075182F029488MHQIALMTLAALLLAGCATGYSPECVTGTGTKDCATGTLGHQQMTQEREGDETVASIDDARCRAIAAPGSGEYLACR
Ga0207541_108046Ga0207541_1080461F002066YSVGFVDIDGNKHSTTDGHVTVIVLTTPAEREKARTVGDRVPERCLGNPDYRMITIVRFVRRHTVVGRKIATAFIRHRVNEEANRLQARYDGKKIARDARKDIFVATDFDGSISSQLGEAEGAANFRVFVFGRNGELIAQWHGVPSAEQLATALK
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