NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027400

3300027400: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027400 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0055666 | Ga0207560
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31016923
Sequencing Scaffolds25
Novel Protein Genes26
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013520Metagenome / Metatranscriptome270Y
F014308Metagenome / Metatranscriptome264Y
F015505Metagenome254Y
F017538Metagenome / Metatranscriptome240Y
F019851Metagenome227N
F019867Metagenome227Y
F021340Metagenome219Y
F022731Metagenome / Metatranscriptome213Y
F028554Metagenome / Metatranscriptome191N
F036947Metagenome / Metatranscriptome169Y
F044475Metagenome / Metatranscriptome154Y
F048418Metagenome / Metatranscriptome148Y
F051112Metagenome / Metatranscriptome144Y
F057488Metagenome136N
F060112Metagenome133Y
F060880Metagenome / Metatranscriptome132N
F066928Metagenome / Metatranscriptome126Y
F071413Metagenome122N
F077375Metagenome / Metatranscriptome117Y
F079360Metagenome / Metatranscriptome116N
F084328Metagenome112N
F089138Metagenome109N
F092492Metagenome107N
F099400Metagenome / Metatranscriptome103Y
F101509Metagenome102N
F103539Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207560_100036All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1917Open in IMG/M
Ga0207560_100052All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1827Open in IMG/M
Ga0207560_100137All Organisms → cellular organisms → Bacteria1498Open in IMG/M
Ga0207560_100150All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1474Open in IMG/M
Ga0207560_100387All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1197Open in IMG/M
Ga0207560_100689Not Available1021Open in IMG/M
Ga0207560_100784All Organisms → cellular organisms → Bacteria → Proteobacteria985Open in IMG/M
Ga0207560_100814All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales977Open in IMG/M
Ga0207560_100948All Organisms → cellular organisms → Bacteria → Proteobacteria939Open in IMG/M
Ga0207560_101347Not Available850Open in IMG/M
Ga0207560_101352Not Available849Open in IMG/M
Ga0207560_101645All Organisms → cellular organisms → Bacteria → Proteobacteria801Open in IMG/M
Ga0207560_102165All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium734Open in IMG/M
Ga0207560_102198Not Available731Open in IMG/M
Ga0207560_102228All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae728Open in IMG/M
Ga0207560_102393Not Available710Open in IMG/M
Ga0207560_102758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia676Open in IMG/M
Ga0207560_102914All Organisms → cellular organisms → Bacteria663Open in IMG/M
Ga0207560_103464All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium627Open in IMG/M
Ga0207560_103980Not Available601Open in IMG/M
Ga0207560_104181Not Available592Open in IMG/M
Ga0207560_104212All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium590Open in IMG/M
Ga0207560_105437Not Available543Open in IMG/M
Ga0207560_105635All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium536Open in IMG/M
Ga0207560_106382Not Available514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207560_100036Ga0207560_1000362F021340MQTFEGRRLIARANETRAQFWHVTIVTSFFLLVFGASLFLGTVMVLGTISNNSSNELTANGRTGRVARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK
Ga0207560_100052Ga0207560_1000521F013520YRRRAERAERACENARTPDAKRLARTAAQRWRELAELAERREAEGPPIPIRFGDASEAVNYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTRKGSTYVGLVPLDRQKKKA
Ga0207560_100137Ga0207560_1001372F044475MPLLAYFLAMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVV
Ga0207560_100150Ga0207560_1001502F028554VLQDQVNFLKGQMRKAKQVRNRALSAGEGRRAIIVMAALTGLFFLAAFVTAGSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDSTPSENINRERIRAILGAFKK
Ga0207560_100387Ga0207560_1003872F048418MPIHLPPKARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFMIGDNTGASCILVGAAAIIAIVVRFGTDRDEARDEN
Ga0207560_100689Ga0207560_1006891F077375MVGKIARGAYVLVVGTMVVAWVISVNKEAPAKPQQTGPQVSY
Ga0207560_100784Ga0207560_1007842F051112FTLAAIAFAAGFVASAAHAFTVHDSNGQVGGQGYLELDKPAAAPDRMAPVSRFGNENGQTTIKQGNGTFQFGGQRSFDQRYNTDNIFNPYARDGR
Ga0207560_100814Ga0207560_1008142F022731MGTDATIDRIKKELLRAFDNTRAELDRIELLAAGLAAFNTPIPGYEPTFRHLPQLNLTVHELASDETRA
Ga0207560_100948Ga0207560_1009483F015505ETSPGTYFARLFKVDAEQFQLLAQKPRSHKDSEYLNRPYELSDLMRQASDAGVWPR
Ga0207560_101347Ga0207560_1013472F060880MRISADFRKTQRRRAELRSRSEAMVATIWLVFYVLGIAVAVSSPIVSRALEFAAH
Ga0207560_101352Ga0207560_1013521F103539MSIVGELLNLARLCHSQARLTQDRAVKQALRKLGDHYESEAKKLQGQLSAHLQQSD
Ga0207560_101645Ga0207560_1016451F084328MRPKNAAPSVSDACPDWEAPAFTKLPIASRTGSGANVANDPSRAVEPVAPGQPLSKLGFSFEWSLPMSTRD
Ga0207560_102165Ga0207560_1021652F014308VAFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA
Ga0207560_102198Ga0207560_1021981F071413LRKVYLFPWGVFTLSGEVLNVLNRKNEYNVESTLLTVARTGQYSSGLRKGFPVAPSIGLSVQF
Ga0207560_102198Ga0207560_1021982F019867MHVTPFSAATILVFVFASPLHAQGIEVFGGYSVNADYVQNRPAILVVDQNVSPFFSLGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDSSTAGIACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQALVGIVHTRSTFMMSGSDVQYTNPFTGGVLL
Ga0207560_102228Ga0207560_1022281F066928MSPADRYRALAAYLRTCAAREQRPEVRTQWTKLAQCYLRLAEQADQNSRADIVYEFDRSVRRGDVGGEPAGG
Ga0207560_102393Ga0207560_1023931F057488SVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHAIAEINLVGKASSTTTTSLLQ
Ga0207560_102758Ga0207560_1027582F060112VIKSAGAYSNVDIGNVGAMSQQELHDCIKAWHPYSSGNMHIKSSPFWDIGQAVRFTEGLGYKGLYSIEVARHEGVRIVYNTILANLA
Ga0207560_102914Ga0207560_1029141F019851VKRPDQVCESCWRVSRASPVPVTEIACHHNKVLATWHADTDEWTYQHRVARKRPTQKQSEQLAKMFDQASSMTRRRD
Ga0207560_103464Ga0207560_1034641F089138RISALMPDSGTAKDAQSKLKQLKDAIHSDYKHRHAIARTAQLTPLEQLNLADAILDVFFALQTIGVNTNPGREWRNALYGADTYIQRYLTELREPETSIESDITEWL
Ga0207560_103980Ga0207560_1039801F017538MTDSLTLVRASRNRDGEWSSDDYDVFEGKQLVGRITLTPQAPEGRPWFWTITARPESSQNQGYAVSREQAMLEFNARWRNPARV
Ga0207560_104181Ga0207560_1041811F079360MRGHPGKEPLMRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207560_104212Ga0207560_1042121F092492MKKKSTSQSAFFNLRILIAAVFCLGALAVALFAQTKSAEPTQQSNRSVGAQDAPSTQTPDVL
Ga0207560_105437Ga0207560_1054371F101509LARAASETNAVRRAGLEALAESYTHMGEQANGHTIDRARSPASAPGT
Ga0207560_105635Ga0207560_1056351F036947MGNSIKEAISIMKPKQIFISILAVLFVFPLMGTFAQQAANSGSIEVMTTFDY
Ga0207560_106382Ga0207560_1063821F099400MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMHRA
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