Sample 3300026973

3300026973: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300026973 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072126 \| Ga0207479
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	13042064
Sequencing Scaffolds	56
Novel Protein Genes	57
Associated Families	57

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	3
All Organisms → cellular organisms → Archaea	13
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
Not Available	8
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.56	Long. (^o)	-89.32	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000925	Metagenome / Metatranscriptome	832	Y
F001262	Metagenome / Metatranscriptome	735	Y
F001757	Metagenome / Metatranscriptome	641	N
F002603	Metagenome / Metatranscriptome	544	Y
F002896	Metagenome / Metatranscriptome	522	N
F003121	Metagenome / Metatranscriptome	506	Y
F005305	Metagenome / Metatranscriptome	405	N
F005683	Metagenome / Metatranscriptome	393	Y
F007896	Metagenome / Metatranscriptome	343	Y
F008954	Metagenome / Metatranscriptome	325	Y
F009013	Metagenome / Metatranscriptome	324	Y
F009342	Metagenome / Metatranscriptome	319	Y
F010272	Metagenome / Metatranscriptome	306	Y
F012309	Metagenome / Metatranscriptome	282	Y
F012686	Metagenome / Metatranscriptome	278	Y
F013034	Metagenome / Metatranscriptome	275	Y
F013378	Metagenome / Metatranscriptome	272	N
F013837	Metagenome / Metatranscriptome	268	Y
F014010	Metagenome / Metatranscriptome	266	Y
F016993	Metagenome / Metatranscriptome	243	Y
F017713	Metagenome / Metatranscriptome	239	Y
F019922	Metagenome / Metatranscriptome	227	N
F020332	Metagenome	224	Y
F022660	Metagenome / Metatranscriptome	213	Y
F022905	Metagenome / Metatranscriptome	212	N
F023901	Metagenome / Metatranscriptome	208	N
F023903	Metagenome / Metatranscriptome	208	N
F024345	Metagenome / Metatranscriptome	206	N
F032712	Metagenome / Metatranscriptome	179	N
F033996	Metagenome / Metatranscriptome	176	N
F034494	Metagenome	174	Y
F035753	Metagenome / Metatranscriptome	171	N
F035910	Metagenome / Metatranscriptome	171	N
F037749	Metagenome	167	Y
F037925	Metagenome / Metatranscriptome	167	N
F041834	Metagenome	159	Y
F044672	Metagenome	154	Y
F045731	Metagenome / Metatranscriptome	152	N
F048407	Metagenome / Metatranscriptome	148	N
F051776	Metagenome	143	N
F053377	Metagenome / Metatranscriptome	141	N
F054833	Metagenome / Metatranscriptome	139	Y
F056726	Metagenome	137	Y
F064864	Metagenome / Metatranscriptome	128	N
F067719	Metagenome / Metatranscriptome	125	N
F068808	Metagenome / Metatranscriptome	124	Y
F071071	Metagenome / Metatranscriptome	122	N
F073997	Metagenome	120	N
F074648	Metagenome / Metatranscriptome	119	N
F081519	Metagenome	114	Y
F084297	Metagenome / Metatranscriptome	112	Y
F090599	Metagenome / Metatranscriptome	108	N
F090808	Metagenome	108	N
F097920	Metagenome / Metatranscriptome	104	Y
F099830	Metagenome / Metatranscriptome	103	N
F104058	Metagenome / Metatranscriptome	101	N
F106125	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207479_100009	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	19946	Open in IMG/M
Ga0207479_100011	All Organisms → cellular organisms → Archaea	19239	Open in IMG/M
Ga0207479_100022	All Organisms → cellular organisms → Archaea	14973	Open in IMG/M
Ga0207479_100036	All Organisms → cellular organisms → Archaea	12387	Open in IMG/M
Ga0207479_100037	All Organisms → cellular organisms → Archaea	12212	Open in IMG/M
Ga0207479_100073	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	7702	Open in IMG/M
Ga0207479_100076	All Organisms → cellular organisms → Archaea	7424	Open in IMG/M
Ga0207479_100089	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	6758	Open in IMG/M
Ga0207479_100096	All Organisms → cellular organisms → Archaea	6350	Open in IMG/M
Ga0207479_100098	All Organisms → cellular organisms → Archaea	6226	Open in IMG/M
Ga0207479_100126	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	4900	Open in IMG/M
Ga0207479_100140	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	4648	Open in IMG/M
Ga0207479_100141	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	4638	Open in IMG/M
Ga0207479_100148	All Organisms → cellular organisms → Archaea	4493	Open in IMG/M
Ga0207479_100289	All Organisms → cellular organisms → Archaea	2303	Open in IMG/M
Ga0207479_100297	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	2255	Open in IMG/M
Ga0207479_100308	All Organisms → cellular organisms → Archaea	2170	Open in IMG/M
Ga0207479_100347	Not Available	1935	Open in IMG/M
Ga0207479_100427	All Organisms → cellular organisms → Archaea	1643	Open in IMG/M
Ga0207479_100433	All Organisms → cellular organisms → Archaea	1610	Open in IMG/M
Ga0207479_100463	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
Ga0207479_100504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1428	Open in IMG/M
Ga0207479_100526	All Organisms → cellular organisms → Archaea	1396	Open in IMG/M
Ga0207479_100569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
Ga0207479_100585	Not Available	1305	Open in IMG/M
Ga0207479_100596	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
Ga0207479_100658	Not Available	1225	Open in IMG/M
Ga0207479_100707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1176	Open in IMG/M
Ga0207479_100772	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
Ga0207479_100939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	985	Open in IMG/M
Ga0207479_101395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
Ga0207479_101524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
Ga0207479_101692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	743	Open in IMG/M
Ga0207479_101767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	727	Open in IMG/M
Ga0207479_101837	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
Ga0207479_101889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	709	Open in IMG/M
Ga0207479_101938	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
Ga0207479_101946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
Ga0207479_102129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
Ga0207479_102210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
Ga0207479_102220	Not Available	662	Open in IMG/M
Ga0207479_102383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
Ga0207479_102476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
Ga0207479_102893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
Ga0207479_102993	Not Available	581	Open in IMG/M
Ga0207479_103034	Not Available	578	Open in IMG/M
Ga0207479_103051	Not Available	577	Open in IMG/M
Ga0207479_103097	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
Ga0207479_103142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
Ga0207479_103380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
Ga0207479_103414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
Ga0207479_103780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	523	Open in IMG/M
Ga0207479_103803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	522	Open in IMG/M
Ga0207479_104118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
Ga0207479_104164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
Ga0207479_104165	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207479_100009	Ga0207479_1000094	F106125	MGADVKGLDDIQKHLRDLAGSADPNTFNEWANRVGTTAKEICNDPDCKRIKLIKNEYSKVKFQFADKEAVDCVIQTIKTHLNSMPRTQQVIFEGFTTELKK
Ga0207479_100011	Ga0207479_10001114	F051776	MMIQFNLIIVTMIIIATPSLLYQQGLSVKQELKVQVWLADVKPNTGEVQMCVDIPETGASSCKKFDASASKEESLGLPSDPIIIDAGTYKLKLNGVTENSTVIGCVYVFKDETGSCGKDRIMPVNETHTMMLFTKVKPVFYDKETGRLYKYGQCYLENSSSKLCVEDEGVQFPALRK
Ga0207479_100022	Ga0207479_1000221	F073997	MPLSSVGIDSFAAFDESGLQISPSERLHRLAVQEVRKLAISLMFPLLEKFNMPMKLV
Ga0207479_100036	Ga0207479_1000362	F041834	LVRITASVYDKNGLIVATGEYNANDYQIKPGSRSGFHVFLDEKLPSSSKYTLPTSFEKSKDDKPAALLLSVDTNSKGPESYIVLGEVINQGADDANSVKVSGIFYDKDHKVVDVDYTYTKPDIISPNKKAPFELSFYTDNSKKIKSVAINAQSDENDNQNITKSAP
Ga0207479_100037	Ga0207479_1000373	F010272	LILICSGHKTFIIVHVKFQLEMYTNQSRLILVAIGAFVTLSLLIFPSTNMIAYSQSGNNTQGNDQAEQKLFELAQKFNTLLKDSKVNLTLSANGNLSSKLQELKNSDAFKSLSEKFAQAVQDLGQGNKTEELKQRAGANLSGLFQKLQDLRNNSTQ
Ga0207479_100073	Ga0207479_1000733	F090599	MNKKQSMKTFLVLGTIIAVAMIGITSSNARLYAGGYGNDDDINWKKFKNSNTYDDANKKTQKCFERAQDRGDNLAGYEVEKCEHKSGSYD
Ga0207479_100076	Ga0207479_1000766	F033996	MEFNLTAKDKHALKSLSRDLRDMFSMKKVEDRLENPPEYTKVFDATFFKTVDRNYLDEMLNWVEDLRKRMNDEESKQSKEELDSETKELIHAGWITEQNENERLKT
Ga0207479_100089	Ga0207479_1000897	F009342	MVRILDSTINLNLYILLSLSATYYITVPVVTGYNVDFYSKGESPFGISYGDWVAKYWKWDLSIPQDPKSNNLLGLNENGCLVHKENSMVMLVDTAAGGIWNQKCTISHNAAILIPIWTGECDQGTKAFETYSFKQLSDCARGFDLGKVKGQVKVDGIPVATLDALDYKTNISNNVTEVYTKGFNATVPINSHFIVERYGTFPGAAHGWFVFLKP
Ga0207479_100096	Ga0207479_1000963	F002896	MGKMNEDTILHFYRILENSLLESDISKIKEGDIDAWSQSFKKVVAESKDRSGKGVFVPFLMWRLGEISPVEASKYLDRRKDDECRVSYDHNNVEYVVWVMALMFMSWSITNLRRKIQNGHCQNIEHPHGDSNPRYCQEGTKFHQELYNECVRTFRDLLIHSNSEKDN
Ga0207479_100098	Ga0207479_1000982	F016993	MNKIGTLGMIIALSVAMLGSTIVDTYGAQHVEAGKSGLAFLWCYSTPNSPNDLLCYTNHGECRMVQSADDDAKSDCLRKKNGS
Ga0207479_100126	Ga0207479_1001265	F005683	MEKSNGTKIAVAVSIVVFSLFLYSIYVNQIVLAQELELKSVGKGTISCDAGEEVKGVRINFFVSHDKGTSFAEWNIDHQKLGSAGGIITKIKTSSDSFVLKGVEAFDNICKNETPSDINLSGNCGAGTVRLVSDNGNKGTFTSNVKCG
Ga0207479_100140	Ga0207479_1001405	F048407	MNQEEILKKTNDMGLTSTPEITNQISDMVSKIADDTMLSAGEVEALTNIMILKACDTALLDKRTIITVNDVLSSLNFVCVPFFFPCAKSNLLENPRITASVITPSDVNLLESLGITKNDELNATPTTEIANKAVSYLKGKVPSMDISSHDFDLFSKRIEIWKLQANILSTLKK
Ga0207479_100141	Ga0207479_1001414	F037925	MKIIAWCYNCQQQISFDNGTRNRNGVAVPVDDYGNLHSCRHKDRKPGFQSQKCFRCRQVIHFDKNYRSISGKYIPLDWNSGKRHECNETPDLKIR
Ga0207479_100148	Ga0207479_1001485	F023901	RIYCHYNNYNAILTVTLIPHFAGMNDNCSLKMRSRHNEPGMTCKGGSPLDGNRFGGYGFAVNENGWNSKRESTHNCHDQHRSGSVPMKIQNERAVKLRYSVKDEDGNVHQIGEIDYMDGNGLHKVMDIFDNSPEQWMVDRNLYEAKSYFWIRNNGSGSITIRDVSLEILP
Ga0207479_100289	Ga0207479_1002892	F022905	MILVAIVSLVSCQTLANAEIKVTPPLNWQPSPNNNSTSMIWYQNSTKSVFGINKAPDILSFPLFLAGPFVAQFLTDKGVLESADQISFGHSNYGYRYILNLSSPSKLLNSFSGLPQIGSFLTTIPQGYDVPYKGMLILTQKQGDLYAIIFLSPIEHFDSVLRDIKASVDSIQFN
Ga0207479_100297	Ga0207479_1002973	F005305	VEDLEKELGPIIENFQNLLKDAKAKKIDSLREDEDLKKEFNKVSKDVIEPVMRKFESYLKSKDVNSSVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSSGVKISIQEDRLITKGEVRQDMMPEYYDKEQITEEFIKERLIRLIKSCFDKNWQSI
Ga0207479_100308	Ga0207479_1003081	F023903	MVDLMINHEGKICDNCGDSVDQLVPLNDPTRIGRWWCLKCIYKEGKARFDADAKNGXPRRKRVRKV
Ga0207479_100347	Ga0207479_1003475	F056726	RDAGHFSGTYIRQVDTRPARRHHRSMAVETHRPRGRGSTLGYSIVLLGAALFVTSCFLPYYGFAFRGGRSVSLYDQLLVVQNGGLELGAKLFLFGGVATVVVVALVGLTRRERPSGRGFLAGAVSAWSLTWIGSLLQSAGLGESSIARGLSLEAGFWLQAVSIGVAVIGTILVVSKRTRAHEHGAPGLESRDGTGIGREDDGSTS
Ga0207479_100427	Ga0207479_1004273	F032712	HVTCRRYYESNFHISSDFYLNYKILTLNMVNQKFTKAPIIFMTATLLVAAAVLVNPVNMVHAQGNATQAPANATQKQGNLTAVIDVDTLSKNIKERHPILAQMAGDEDKNTIVVIKGMDPKEAAKTIIALNMLRLLQQYKEVDAK
Ga0207479_100433	Ga0207479_1004332	F099830	MTSIKIFKNHDSQNLENDVNNFLKGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETDSSS
Ga0207479_100463	Ga0207479_1004633	F009013	MLGEREAVVVEVKPWDVHGVGYVDVTVAYPDRMLETARLGPESLPEDLEAGERVMVTKAVNMIVGIRRA
Ga0207479_100504	Ga0207479_1005042	F008954	MKKTRLLPLLCALTAIAWSLPGLAQAKASKAPYPQKASSMFDGGSAFDGGSAFDGGSAFDGH
Ga0207479_100526	Ga0207479_1005263	F084297	MLKTTALIAISIVAALFFLTGVQVFTYAQMSNDASMGGNMTNATAANATSGVNMTGNISGLGPXYG
Ga0207479_100569	Ga0207479_1005691	F090808	VGLLLLASNAAAAPRVAVRIVPVFSPKLYASRGAVGSMVPASGSTVSRATALASLTRGKLENALLGGKPNGKPLISLGGPPAPVTIY
Ga0207479_100585	Ga0207479_1005853	F097920	RLVIPMHYRTEAVNFLDPPDEFLAALGARVERLDESELEAEQLLGTAEDPTVALLAPPS
Ga0207479_100596	Ga0207479_1005963	F045731	DGCPVGDPAFCEQAAFLANALVLSDADAVFDLSRRVSMDCADLDRDVFPQCDDRGRLEGYVVGDHQGHLFVNGPADYRRTLGFFVEAVDEEYSDEFGGAQMQILGVSTCGKGANTSYHLVYLVGLGDPTSTLPGARFLGTYELTKEDGSWAIAATYVGLYTDWQLVLDDPLTQIACGDIQPWVGAAPNLNPPQSESQPTPIPATGST
Ga0207479_100658	Ga0207479_1006582	F067719	MRVLLAAVATGHPAIPTDGDFDFTPLLYAAIWILAFRRLRPGLMLLAAPLFLLAGALVDSISDVLGLSTLTTASALALLALLLPLPRPLRHHRPSAG
Ga0207479_100707	Ga0207479_1007073	F002603	MTAITVRIPDESVELDNVEERRVLTALEVIYEGGCLHGKTADFLTRDVERVVVGLHLPDWHFFETYKRTICVDIRSQRTIFRCVGTFKPNNSSWWERLLAVFRIRKVKAIAI
Ga0207479_100772	Ga0207479_1007721	F012309	MAPNAGYVIAGYLVTALALGGYTLRLFARARTAKRGARTIADQRHHG
Ga0207479_100939	Ga0207479_1009392	F024345	MLRAWKEASMRRNLLVAMLALGLLVVGAHVVIAGTATGRTPVDCIDTVWRSSTVSTSSTTWEAVPGLEADPTAIFPITVDVSALVSGAPARFRILSTNVGEQTFVSNPGPTRFEPGGTGPSSFSFQWVERDDVASPHANFIRLQWRSPSGDQVSMLRGDMAVLYRTDGCDGSS
Ga0207479_101395	Ga0207479_1013951	F068808	AFGGGIDVAAQGEPDQTIYQAFAVTADGFDDLDQMALYFLTGNPIVDVAVDDPTRVDGEPGRLIVADIVRSGEVTSSVAAAMTLGDGATGYLIVAIFPPGGWDDERDDFERIVRSFRTDVPPGLETFPVDGQAS
Ga0207479_101524	Ga0207479_1015242	F012686	MCRALKVLCVAGDGSALAELKRAAVSAEWELAPGATTEEDAIRQLHAERPHVLVVFGSFPTLVERALEAYPSLRVISDRATPGAVAVGSLEQVRVAVKPSNGPGGPVRA
Ga0207479_101692	Ga0207479_1016921	F001757	MRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207479_101767	Ga0207479_1017671	F074648	MSTTSRLLTAAVILGGLVTYGSLNSNAATGPEFIRITDRQFSYKRVDVGAPGRSPGDQEIIYDKLFNRKITPRPIGSAQFLCTFTVGNTRMCTATISLPKGELVATGRVRFRQLYGLAIVGGTRLYDDARGTLTVTSTGLKPRRDVLLFRLAG
Ga0207479_101837	Ga0207479_1018371	F007896	GAYFRENAASLHSDLARRQSYARDFTLRFVEGANYLSPKMTTRSWLRVFRLADYESTTISKKALCQLQDRKAQERGARDLQEPAP
Ga0207479_101889	Ga0207479_1018892	F035910	MRLDPNTHAYVMATAFFTSICFAIAAMSVIGLAIHVFVPGAS
Ga0207479_101938	Ga0207479_1019382	F017713	MKGRYLQSEPNGDSAPLFGSWPKAYCVALGIFGFEIVLLYAFTVIFS
Ga0207479_101946	Ga0207479_1019462	F013034	MNPKFLIQRADRLIKTTCGRQWLFVATALALSGVRATADDANFSEPLIQARFDQLIPTSYPTLRPSFDRLIQTTWPLTDPGIARVPITENLVHPLDQPLVIVNEGWGQLPAIRPKRDSIPGLRQTSVSRHTPPAPSGKTR
Ga0207479_102129	Ga0207479_1021293	F001262	MSLGNEVDAVFRREVKSLPAYEKAQAATGSGIAPPVDEMNQLLMGLVVAAQRSFHLLADRIEDLGSA
Ga0207479_102210	Ga0207479_1022102	F013378	VRRFVIVLWAALFGILAAGLTTAFAGTAIVQEETVVFGEHTLRGRNLDLVGEANDFRPGDRYIFRSVLTDAQDSVAGHLFVDCSVQFAKKDSCSQIYEIPARGTVTAEGLIPVSQLKVDGTWVLAITGGTGEFENVGGSVTVVIVDDRGNSEHSLH
Ga0207479_102220	Ga0207479_1022201	F064864	QRPTRTVARMDVAMPRSLTRARSGRRADDVNERVLPLQLRTLSIGMRTILLVPLLSAAVLVVGRRTDVEMGPLGLVFVTVAVSAGLATLLPYERLFRTRWGVAVVFGWSIVNLALIAIGIWATGGAGSPLVFLYALTTLFFAVAFTPRAQAVFFALTVGSYWAALGAPRSNSLNLVALAVLAFLANLLVGQLKRQTAAHMEARLESERRWALLAVVSAAA
Ga0207479_102383	Ga0207479_1023831	F022660	VIAAPSGVEESPDTAGQDAGATQAAKADGKWHRKETAGDGSRETSKVRVKRWGKSPPASWRHGG
Ga0207479_102476	Ga0207479_1024761	F035753	MGTLASILLPALAFVAAVALVLAYRRKRALEPERPWWGMPGVWIGLSMVFVLVGVVAFPRLLGFTFLFFPFVLMRSVGRGRRDRRP
Ga0207479_102893	Ga0207479_1028932	F020332	SYRPEEHQPDPGVRGAYGEAYVRYRKVYASLKPVFADS
Ga0207479_102993	Ga0207479_1029931	F053377	MMQISETRVVSPDPRQARNAVRTLRRTLARLGLPDRVSSEASVPLEQIEAELRTLDPDRCVVIERLERFTEILASAGVDMTRRSLIRSIRHIAAWLGPIGVPLVLHLA
Ga0207479_103034	Ga0207479_1030342	F081519	VTKNRDRERDIVRELQEDAKWSMWTNTFGRQRGWGRPRSLPYGPGLRTYMLAAVLILGTVVAVIALIALLLNLD
Ga0207479_103051	Ga0207479_1030512	F034494	LAVGLGCMVAAVAAVRSRRLRWLALVLAVAGAAAIVHAIVELATE
Ga0207479_103097	Ga0207479_1030971	F003121	GTRTISGTETTCGTRTISEIETIISGMTGKNTFSLTPQGIGIAIGTAIATTGGMVTDALLLMERG
Ga0207479_103142	Ga0207479_1031421	F054833	MFRTAVGRRRRALWAILSCLFAVGFVVSAFMVHSEGNQPPESVVERARDEAQLATATLSGKELTKPITGSTYDRLADRIWKSVSSEGSIAGVTIWSSRGRIIFSLNESRVGKTPAEMQSVITEIANGSDSTRVLGDTVQTFTRISKAGSVAIVQVDQ
Ga0207479_103380	Ga0207479_1033802	F000925	MSNSGPERKNYAEIDRLERLLEELRASASTARETEAIREIGLEIALAVREVGAMLINVGWEQSYAANRDPQQAG
Ga0207479_103414	Ga0207479_1034142	F019922	MLAYRSTIVAIFVSLALAGCDRNQQAPQQSTINQTPSAHSQTKALRAASAVGYDGKQLQKQVDRVLEQKQKRDGDLEKALDDTGPQ
Ga0207479_103529	Ga0207479_1035291	F044672	VAVRSSDGRRVAYNTWQELKTVDNDQSFSQQAIADGTALGTPSLRVHDDTGKDFLLARGAYSAAWRHDGAIAFVKGSDPDFRAGRSYTGQVVVRSDIHGRDAAWTSEPAHYVVYAWAGDRLLLYRVGLGEKLELLVADGPGRIRPLADGSAIAISPDATRVAVLSQDGTSVRVLDIATGS
Ga0207479_103780	Ga0207479_1037801	F071071	GRVFDDVAISQCSLVAAVRGYSHVPFDAKDVTELRVTHRRWGFGQQKKPS
Ga0207479_103803	Ga0207479_1038031	F037749	FIKHVDAHLTGRKECVPLSPRKFRELKITSLSGAMHLDGEPWPTKKKNTGNARGRVEFNVKRAALLIWQPQQRHGRDEK
Ga0207479_104118	Ga0207479_1041181	F104058	DLARDASMSAAEALRQGGDEEQAKLAALDTIADADEPVRLKRIGVGRREVTVVLVVRADTLVVERIPFLDDLERVTVSGSSSVPRD
Ga0207479_104164	Ga0207479_1041641	F014010	VYLGTVRTQGEPPATGFGESESDGALEAFEPRAPAPGYAYLQVSTRGPELRERLQGVVGVIVLLGIGATALAFALYELGHLINKTIEAFLD
Ga0207479_104165	Ga0207479_1041651	F013837	MTTLMDTVRTEPSARPRSRPEATVDAWRDTSAESRSRERTFEVASRGGYARTVVGRLAYFDDEAQTYMVLTRSGVLVRVPLRDITSSRGVARRDPIVADALSRMSRLRHATTVSPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026973: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences