| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026930 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054324 | Ga0208340 |
| Sample Name | Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN336 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4884166 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → grassland soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Chapel Hill, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 35.913 | Long. (o) | -79.056 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013809 | Metagenome / Metatranscriptome | 268 | Y |
| F016621 | Metagenome | 246 | Y |
| F058962 | Metagenome / Metatranscriptome | 134 | N |
| F093590 | Metagenome / Metatranscriptome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208340_100122 | All Organisms → cellular organisms → Bacteria | 903 | Open in IMG/M |
| Ga0208340_100327 | All Organisms → cellular organisms → Bacteria | 620 | Open in IMG/M |
| Ga0208340_100568 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | 525 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208340_100122 | Ga0208340_1001221 | F013809 | VGETVRREKALDFSGCKPRPGTGSLHPVAIESAVEVTKLSELSMERVARRLGERAGHNVSER |
| Ga0208340_100327 | Ga0208340_1003271 | F058962 | VPSYQYGTTVRNFDGSTTDTIVGNADFGSIDQTNRKITVRVSTTRLNTILTAAGHPRIVSGSTFCGLRGHTFELSELALEDFTRGGTEFKVK |
| Ga0208340_100327 | Ga0208340_1003272 | F093590 | VILRSLPATALIVVGLFAVDRLKGYASSSAPSPSERPKLAPFEKRLAAAESVKVQTVILGIELDSTLESAHSKLDSLGKPSATSLDGADEAAGRTEDERKVSWQLAKTD |
| Ga0208340_100568 | Ga0208340_1005681 | F016621 | VGVTDWNWLLPRDNQDYPWDCAACSTAWAMRTIGFAVSEQDVIAGLGPARISPTYGLLDASGAGLVSFLEEQGIHAANNPNASFADVAGAAGYQPMVIGGRAWGHWVAVRMSGLTAGRPDVAALALMNPAPGWMGIDQVLSEPDFEYLGSFSAVWFTSW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |