NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026804

3300026804: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026804 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075432 | Gp0054328 | Ga0207737
Sample NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26809480
Sequencing Scaffolds33
Novel Protein Genes35
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
Not Available15
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina cetonica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001022Metagenome / Metatranscriptome804Y
F001962Metagenome / Metatranscriptome611Y
F003090Metagenome / Metatranscriptome508Y
F005929Metagenome / Metatranscriptome386Y
F006756Metagenome / Metatranscriptome365Y
F008136Metagenome338Y
F008160Metagenome / Metatranscriptome338Y
F011271Metagenome292Y
F011941Metagenome / Metatranscriptome285Y
F012657Metagenome278Y
F013380Metagenome272Y
F014508Metagenome262Y
F019273Metagenome230Y
F024236Metagenome206Y
F025163Metagenome / Metatranscriptome203Y
F029216Metagenome / Metatranscriptome189Y
F031453Metagenome / Metatranscriptome182Y
F034030Metagenome / Metatranscriptome175Y
F044096Metagenome / Metatranscriptome155Y
F057789Metagenome135N
F065953Metagenome127N
F067850Metagenome / Metatranscriptome125Y
F069634Metagenome123Y
F074315Metagenome119N
F075781Metagenome / Metatranscriptome118Y
F078037Metagenome116N
F083637Metagenome / Metatranscriptome112N
F091102Metagenome107N
F091204Metagenome107N
F096399Metagenome / Metatranscriptome104N
F097844Metagenome / Metatranscriptome104N
F104209Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207737_100274All Organisms → cellular organisms → Bacteria2744Open in IMG/M
Ga0207737_100459Not Available2366Open in IMG/M
Ga0207737_100489All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus2328Open in IMG/M
Ga0207737_100742All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2025Open in IMG/M
Ga0207737_101238Not Available1691Open in IMG/M
Ga0207737_101687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1501Open in IMG/M
Ga0207737_102516All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium1286Open in IMG/M
Ga0207737_102657All Organisms → cellular organisms → Bacteria1253Open in IMG/M
Ga0207737_102970All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1189Open in IMG/M
Ga0207737_103496All Organisms → cellular organisms → Bacteria1102Open in IMG/M
Ga0207737_103530Not Available1099Open in IMG/M
Ga0207737_103677All Organisms → cellular organisms → Bacteria1074Open in IMG/M
Ga0207737_104203Not Available1015Open in IMG/M
Ga0207737_104223Not Available1013Open in IMG/M
Ga0207737_104846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium950Open in IMG/M
Ga0207737_105860All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales865Open in IMG/M
Ga0207737_105979Not Available856Open in IMG/M
Ga0207737_106246Not Available836Open in IMG/M
Ga0207737_106630Not Available810Open in IMG/M
Ga0207737_110054All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
Ga0207737_110214Not Available645Open in IMG/M
Ga0207737_110735All Organisms → cellular organisms → Bacteria → Proteobacteria629Open in IMG/M
Ga0207737_111092Not Available618Open in IMG/M
Ga0207737_111588Not Available603Open in IMG/M
Ga0207737_111955Not Available594Open in IMG/M
Ga0207737_112536All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium578Open in IMG/M
Ga0207737_113515All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii555Open in IMG/M
Ga0207737_114422Not Available535Open in IMG/M
Ga0207737_114988Not Available524Open in IMG/M
Ga0207737_115313All Organisms → cellular organisms → Bacteria517Open in IMG/M
Ga0207737_115316All Organisms → cellular organisms → Bacteria517Open in IMG/M
Ga0207737_115510Not Available514Open in IMG/M
Ga0207737_115924All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina cetonica507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207737_100274Ga0207737_1002747F057789MSETALQFTGTDLRGLLDVLLEALKVIRRTGRRPTITVNGKLYASHDLRKVAALLPDEELQPHHQALVNVMFAKKQRGYRKTAYNLADRVNSWRTEEQKLAARQAAKTSALAVAEPAPFRNRGFSERTIKALLDCSIDQPERLLFMQSADLKKIPGVGKASFDEIMRYRAKFIRSSVMKKNP
Ga0207737_100459Ga0207737_1004593F029216MYALIIVIGMLSTGASGSAVIPVGVTSQIVGKFKNLDECKAAASQPHAGGPISDFSLSTSWGANWYCTYTGAN
Ga0207737_100489Ga0207737_1004893F008136MREAVDTSGMARRRSTEEIEQELEQYRTSGLTQIEYCRQTGMVLSTLGRYLRRSGVEPERLIRVNLESAVAESAACFALVLGNGRRIESGWRFGEAELASLIRVVEGA
Ga0207737_100742Ga0207737_1007422F001022MKILEIVPRDRTRLYGALVAKEAAIRRSGRGTYSRVGRRSLGSARWKHKMYKGSVQLAHDPSEIVTAKVRAATPEDERKLLSSFLGFVDRHCGDYVDTITIQYRQIR
Ga0207737_101238Ga0207737_1012382F083637VDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207737_101687Ga0207737_1016872F012657RLLSASPVMIAASLHQMAEKDDPAVAPETLRLPEAVHAQFREKLFLYREANVLLALVDRVNPSSDDRDPLFEPVFWEYERIVFWELADPVIRATRRQSVIAALRDLNLRTDLGNGHDFALSWSRNWFAGIGHNEMYPARLERLSRFWSHEYSAVQKVLKAAVRTSRI
Ga0207737_102516Ga0207737_1025162F001962MILKSETYHFHRLDLTRQAGFIVTIYDEDGLRLASTPPMPTPTQAFEEARKVVDNKVEAPIKRGRPPPDL
Ga0207737_102516Ga0207737_1025165F019273MIHKVKTNKKYPFKQMQPGERFKLKDDDIRSAQKMAWYYRTRCKRPINVVIAKGDDGYHCQRID
Ga0207737_102657Ga0207737_1026571F104209KGHRLARHNGHADERTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR
Ga0207737_102970Ga0207737_1029702F078037SAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSKKMDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK
Ga0207737_103496Ga0207737_1034964F074315METTDFTEQWSNMQKMFLASSEMSASFRENARQFWENQGKVLDNM
Ga0207737_103530Ga0207737_1035301F091204MSATVIEFPGARESGSKPAHDVQSAQVSNEVVAPLTDFEIAAIENLGTIFQAGGTEAFNFAAKRQLFILASLIKRILGEDGLNELLTAAEWV
Ga0207737_103677Ga0207737_1036771F083637VDSLFKQGHLMKKMLVVICSLVLALGLAGCGWAGKAPIIGKGKAPA
Ga0207737_104203Ga0207737_1042032F008160MYALVTVIAILSPATGSVTPVGVTSQTVGSFRTLDQCKAAAMQPHGEGAISDLSLTRGVYRYCAFAGETLRNNSRR
Ga0207737_104223Ga0207737_1042232F011271MGKNGGRRGDRRARIDFQLEPKERQALKLTEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSPQVPERARRKVEQYVEQKVRGLYGHCESATRSFGNQFQH
Ga0207737_104846Ga0207737_1048461F044096VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRL
Ga0207737_105860Ga0207737_1058602F097844MINPLDLLNKFISAIIAYGPKNKTKKARMARKAARRKRFAAMKRH
Ga0207737_105979Ga0207737_1059792F034030MRRREFILLGAYVIAGCVAAVTSADLALAQAKNSTSMEDRLSAKIRCQDFQKNSDGKWTSSSKAKIGKIDFSNHTFGVDEVDIGGADLATFLNRKCAAH
Ga0207737_106246Ga0207737_1062462F014508MFTWALVIFIGLWLILADIGPVRRAKLMGNPMLIHIIVIGSGLWIHGGSAEGAMAAVGSGVCSAIFVRYQRRMYGYIRRGQWYPGIFRHDDPRQGLKT
Ga0207737_106630Ga0207737_1066301F096399RSPEWSPAFPDMNTLNVDDEYWTIREVCELVKDDDGVLPDEIVDELKNAMHGVRRLLELLGRSRTYATGSQCLLELLDNRIKTFRTKR
Ga0207737_106630Ga0207737_1066302F024236MHLVLVFTVAVGLYVLGMIVLALAAILGSVRGNRELKKLEPEPRPGDY
Ga0207737_110054Ga0207737_1100542F065953MRITKIVPALVVFVYASPALAQQKVFEWQRGTEESVRLDPAN
Ga0207737_110214Ga0207737_1102141F011271GTLSTGPERRNLSTCEVGHTTFAPTAVTFLRSHLAAATKNMRSNRTRSVGRRSRIDFQLEPKERQALKLAEIREALVAAGYNTTAKQAAVLGIGRSTAWWLLNHNKRAGPSAKVIKRILLSPQIPKRVRRKVEQYVEEKVRGVYGHSEQRTQWFSEQFQRSPNS
Ga0207737_110735Ga0207737_1107351F097844LDLLNKFISAIIAYGPKNKTKKARMARKAARRKKLAAIKRH
Ga0207737_111092Ga0207737_1110921F069634VKVGIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207737_111588Ga0207737_1115881F005929MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRRIVEDLRQRSVDVYLAAKTPEAESDSKRFREASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYQYF
Ga0207737_111955Ga0207737_1119552F003090ARNAMEKKTVTDYKGYRIEVCPVGKGWRASIFSPGSIRPWPNSPANLEKSSAEELVAEAKRLIDARLGPQRL
Ga0207737_112536Ga0207737_1125361F091102DLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH
Ga0207737_113515Ga0207737_1135152F031453IERAEWRPTMAGCKVIIHQHLDQTLTLMIAGHRVGHYSAQGKLLTPLTKKQVKAVEKTLRGKVQKQTFPLNLQIPHTTRDSHFPTASTTADF
Ga0207737_114422Ga0207737_1144221F075781KPVGQTRPTEERFLLRVDGQTKRSFSSKEAAATAGAAVKKAYPIVMVTIVDTEDGTSEIIKP
Ga0207737_114988Ga0207737_1149881F067850VVQLQLLDLVISRQCGAVPMDAATRAALIDLMARVLVVVFHE
Ga0207737_115313Ga0207737_1153132F011941MAEPRQNRGPFQIQVSYLFDRLLEPKLAQAYELLVPCREHPVGVKEFDDEDGGNLRKSV
Ga0207737_115316Ga0207737_1153162F025163MQLTLAFLEPSPSARPSPSQKLDAETCAEALNILGRIIAQACETTQHTEATDE
Ga0207737_115510Ga0207737_1155101F013380MSEFAIGQKIVCVCDDWKNAFFGSVRETGERYPVKDGVYTVIGHDWLLLADRPGVMIAEVSNDCIWAEQNFRPIEPRKTDISVFQKFLVNPKEKIDA
Ga0207737_115924Ga0207737_1159241F006756AERFEAELAEFRPAARRSRAQDRLFAFLDGLCSKAALAAYLRDIADSDRSLSRQITELLELIRQYGPDAVAGAIEKAATARAFGADYVANILRQQQCPRREQPPLRLRDPRLNELVTDPLSLLAYDAFILQPEKESDDTPGTETPRSESDGHEPPSGDDPL
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