NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026779

3300026779: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026779 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072056 | Ga0207471
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19861161
Sequencing Scaffolds25
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria2
Not Available11
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000959Metagenome / Metatranscriptome821Y
F001033Metagenome / Metatranscriptome799Y
F002508Metagenome / Metatranscriptome553Y
F003996Metagenome / Metatranscriptome458Y
F016471Metagenome / Metatranscriptome247Y
F017145Metagenome / Metatranscriptome242Y
F027009Metagenome / Metatranscriptome196Y
F028554Metagenome / Metatranscriptome191N
F033457Metagenome / Metatranscriptome177Y
F034995Metagenome173N
F037759Metagenome / Metatranscriptome167N
F040398Metagenome / Metatranscriptome162Y
F049535Metagenome / Metatranscriptome146N
F054841Metagenome / Metatranscriptome139Y
F062531Metagenome130N
F064703Metagenome / Metatranscriptome128Y
F068085Metagenome125Y
F080668Metagenome115Y
F081321Metagenome / Metatranscriptome114N
F087926Metagenome / Metatranscriptome110N
F090709Metagenome108Y
F092011Metagenome / Metatranscriptome107Y
F092487Metagenome / Metatranscriptome107Y
F094085Metagenome / Metatranscriptome106Y
F094116Metagenome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207471_100027All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2408Open in IMG/M
Ga0207471_100102All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1774Open in IMG/M
Ga0207471_100487All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1197Open in IMG/M
Ga0207471_100625All Organisms → cellular organisms → Bacteria → Proteobacteria1107Open in IMG/M
Ga0207471_100837All Organisms → cellular organisms → Bacteria1008Open in IMG/M
Ga0207471_100839Not Available1007Open in IMG/M
Ga0207471_100867All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota994Open in IMG/M
Ga0207471_101014Not Available938Open in IMG/M
Ga0207471_101449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales818Open in IMG/M
Ga0207471_101496All Organisms → cellular organisms → Bacteria809Open in IMG/M
Ga0207471_101511All Organisms → cellular organisms → Archaea806Open in IMG/M
Ga0207471_101910All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae736Open in IMG/M
Ga0207471_102062Not Available711Open in IMG/M
Ga0207471_102067Not Available710Open in IMG/M
Ga0207471_102080All Organisms → cellular organisms → Archaea708Open in IMG/M
Ga0207471_102226Not Available688Open in IMG/M
Ga0207471_102233Not Available688Open in IMG/M
Ga0207471_103097All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium602Open in IMG/M
Ga0207471_103249All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae591Open in IMG/M
Ga0207471_103366Not Available583Open in IMG/M
Ga0207471_103828All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium551Open in IMG/M
Ga0207471_104235Not Available529Open in IMG/M
Ga0207471_104252Not Available528Open in IMG/M
Ga0207471_104619Not Available510Open in IMG/M
Ga0207471_104625Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207471_100027Ga0207471_1000275F087926VNYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTRKGSTYVGLVPLDRQKKKA
Ga0207471_100102Ga0207471_1001021F054841IHRRSNGTVDTDVYRRKAFLLRRETTNQILRRLGRSVLPQLIGAIAILVSYVLFLPRNPLPQGAGSTFAPAKVSVLPSSLRTPKSNHRSQ
Ga0207471_100487Ga0207471_1004872F001033MCGHSLIARLTIAVFVFQMLGVTSVVHAERPDSTAGTSSAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYQLTVRPYFFKSEEGSLLLAASDDAVRKLQAGTAFNFTGQAVTHKDGRTHIMLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207471_100625Ga0207471_1006251F037759NACPHPYYRAILLRPWAPRTPGVPGRIRVNHLVSAQGQVDNEQGFAMKGTGLLHPGKLAAVIVAGGLLSGAARAQSPELGAPSIGILPPSDILASVSYLGLDPSGEPVRRGAYYVLHAFDRAGIELWVVVDAQFGDVLFMAPALNTSLTPPYVRAARIIQVEPPESGGQQKK
Ga0207471_100837Ga0207471_1008372F080668FHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207471_100839Ga0207471_1008391F094085MRSIPAALFALVFGAAATVPAFGIASVNVFGLKAPEEITGFTLNDSTNFEKIRPGD
Ga0207471_100867Ga0207471_1008673F027009YFKKSKQNLQSEHDSMIQDVKQDISSYKKKALSNA
Ga0207471_101014Ga0207471_1010142F081321MRAVMCTVLRAAALISLALVLVSPTHAACRGNCEPNVEVARAAMQQIFKQTFLSPYTLVSFERLDGRSGERYGGAFYEMRIRAVLHYDGVKLRCRRPACPELHHYLLEDDARSKKATVAGWLFLQQDGEGDWQPVPLTPGPQ
Ga0207471_101449Ga0207471_1014491F033457RNFMSYVLASAFVVLLLAVVTPPGFGVAARPSIEGQRLAPQIVDRTRKSDQLPVPKATGRRLTPPAAPVLVGCDPVFSALSKDKQANYPGRCLA
Ga0207471_101496Ga0207471_1014962F094116AFDVAATQIRVADLEERTGLDFGDIKKFDHFAAGGASGTLELPSIEGIVQRAKIVRNGNDIVV
Ga0207471_101511Ga0207471_1015112F016471MTEADKFGAVKDATVAIGLANKDTKDVISSFGTGFIIGGEYIVSSAHIFSQCIKYNAQNKDKNKGMEGIYSAFNITTNGDQLELNTYHIIKAIRLPPVKEVTGFTGSVDLDIGIGKLDRHSDNFLHIKEPTQLKLYDEIVICGYPSGR
Ga0207471_101910Ga0207471_1019102F092011VPVHYRFGGMDTPNVLFHTAVLVLGVLGILVSLAGIAFWWVSRKMNRLT
Ga0207471_102062Ga0207471_1020622F090709IDPSVTLPIDKLNWMQNELVKAGNLKAPFDLTTMTAPDIRAEAAKRATK
Ga0207471_102067Ga0207471_1020672F017145HAMTAHKSSHRHWMLRDIPRTYVLLTWLAFGAALLIYSNDWHPSGWTALRKEATAPKPPVSVTEQYTGSIIIVPTRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207471_102080Ga0207471_1020801F062531TMIWFQNSTKSIFAITKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSKLLDSSSGLIPKNEFLSKIPKGYDVPFQGKLILTQKHKELYAIIFLNPKEKFDSMLNQIQPTLDSIQLSG
Ga0207471_102226Ga0207471_1022261F092487MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVG
Ga0207471_102233Ga0207471_1022331F064703KSLTVLIVALLGVFAVKSIIGPGKMNLGESVKYPVPTYDLHVAQPVDMKNFPSDVIPLP
Ga0207471_103097Ga0207471_1030971F000959MKPILQINHKQRGPRRDNRARRGHQSFPLTDYNYRPTAEAEASSLAGRPATKAPAFHKLSSKFFGAETSRDYVVELLFFILITGIAAWPVVSMLIAVIRLIRNY
Ga0207471_103249Ga0207471_1032491F049535MRRHIADSRASTKSIHESAWSLHRFASLLSTFAVVAGVPRQTSRSIKPRERDLRCLRLFFGPVFNEANEPSSTCRLRFQR
Ga0207471_103366Ga0207471_1033661F002508NTQHYARWRNSEVSRNFHRLGLLVAAIILTAGLLLMAKDALGVRFWDLIPADIPILAGGIAIGLTGIGLVSLAAYGIVRAVGWAIDKSV
Ga0207471_103828Ga0207471_1038281F003996GKLRVPTHPRRTFRDQFMRMVTGSGDFATRLTATSLNGRVEVAKSARMEEPAEPVVFRGSMGIPQFSPDGKRLLILSGGLWNVYDTIRLIDVSPFYRRQESAAENFQPKSAPTWLAEIASAVSAFDLGGDGSLLTLETVRKRHPESKAGDPYEAVWKRFFPDDRSTQQR
Ga0207471_104235Ga0207471_1042351F040398VPNFLRLCVATSSKVLSERRDDLVKFVAAEMDAYRFALANRAETIKVSHEMTHAKPDDKRAEFITDEAIKNKQIDPALSIPLDRLDWMQNLFVKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207471_104252Ga0207471_1042522F068085MIALKYILLFTCLGIGLALCVGVISILRSPPDNGPPAWFAAAFGAMFFWGAFALARWRL
Ga0207471_104619Ga0207471_1046191F028554LKGQMRKAKQVRNRALSAGEGRRAIIVTAALTGLFLLAAFVTAGSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVMETDKKGRCEERQLDNRTGKMVSANYVNCDARLEPERDSTPSENINRERIRAILGAFKK
Ga0207471_104625Ga0207471_1046251F034995MTKILALIAGIFLIGFPAWMLKEMSVPLPEYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLALLFYAWRGSAGYRPPGSAG
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