NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026759

3300026759: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026759 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072088 | Ga0207527
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size23962983
Sequencing Scaffolds25
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F004397Metagenome / Metatranscriptome440Y
F009828Metagenome312Y
F012929Metagenome / Metatranscriptome276Y
F016471Metagenome / Metatranscriptome247Y
F019338Metagenome / Metatranscriptome230Y
F020078Metagenome / Metatranscriptome226Y
F021340Metagenome219Y
F031184Metagenome183Y
F034564Metagenome / Metatranscriptome174Y
F038225Metagenome / Metatranscriptome166Y
F041421Metagenome / Metatranscriptome160N
F052029Metagenome143Y
F055629Metagenome / Metatranscriptome138Y
F056934Metagenome / Metatranscriptome137N
F069475Metagenome / Metatranscriptome124Y
F072513Metagenome / Metatranscriptome121N
F073997Metagenome120N
F075090Metagenome / Metatranscriptome119N
F075211Metagenome119Y
F077375Metagenome / Metatranscriptome117Y
F078804Metagenome116N
F083152Metagenome113Y
F099400Metagenome / Metatranscriptome103Y
F101509Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207527_100410Not Available1157Open in IMG/M
Ga0207527_100522Not Available1079Open in IMG/M
Ga0207527_100727Not Available979Open in IMG/M
Ga0207527_100964Not Available903Open in IMG/M
Ga0207527_101098Not Available860Open in IMG/M
Ga0207527_101563All Organisms → cellular organisms → Archaea757Open in IMG/M
Ga0207527_101907All Organisms → cellular organisms → Bacteria703Open in IMG/M
Ga0207527_101929All Organisms → cellular organisms → Bacteria700Open in IMG/M
Ga0207527_102018All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium691Open in IMG/M
Ga0207527_102058All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales687Open in IMG/M
Ga0207527_102157Not Available675Open in IMG/M
Ga0207527_102528Not Available639Open in IMG/M
Ga0207527_102977All Organisms → cellular organisms → Bacteria603Open in IMG/M
Ga0207527_103038Not Available599Open in IMG/M
Ga0207527_103210Not Available588Open in IMG/M
Ga0207527_103278All Organisms → cellular organisms → Archaea583Open in IMG/M
Ga0207527_103342All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon579Open in IMG/M
Ga0207527_103484All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium572Open in IMG/M
Ga0207527_103550Not Available569Open in IMG/M
Ga0207527_103784Not Available557Open in IMG/M
Ga0207527_103889Not Available551Open in IMG/M
Ga0207527_104355All Organisms → cellular organisms → Bacteria532Open in IMG/M
Ga0207527_104420All Organisms → cellular organisms → Bacteria529Open in IMG/M
Ga0207527_104743All Organisms → cellular organisms → Bacteria516Open in IMG/M
Ga0207527_104934Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207527_100410Ga0207527_1004101F069475SKRVVQIALNSATVHRLVAAARPLVKTFDEHQMQTAHGLAQEMGLGPVVAALK
Ga0207527_100522Ga0207527_1005222F004397MPEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTWWQVVIAAAAVGIFVEMILVLFEPTPGVHQGRLLMAVLAAGVWSNLAFAFKTWRAKRA
Ga0207527_100727Ga0207527_1007272F099400MRILIWIVGLLALGTSLDSSLYDGAYTRALVGKIQDTHTAIGLK
Ga0207527_100964Ga0207527_1009642F055629GKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0207527_101098Ga0207527_1010982F077375MVGKIARGAYVLVVGTMVVAWVISVNKEAPAKPQQTGPQVSYM
Ga0207527_101563Ga0207527_1015631F016471MTEADKFGAVKDATVAIGLANKDTKDVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQNKDKNKGMEGIYSAFNITTNGDQLELNTYHIIKAIRLPPVKEVTGFTGSVDLDIGIGKLDRHSDNFLHIKEPTQLKLYDEIVICG
Ga0207527_101907Ga0207527_1019072F021340ELQTFQAQRTIARSNEARSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK
Ga0207527_101929Ga0207527_1019291F075211NRRMKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207527_102018Ga0207527_1020182F083152HEKNFHLQKIPGAWKHGELPACFEPIEFGSFFVSYTK
Ga0207527_102058Ga0207527_1020581F034564SGRLSGYWYGAVCIAGLGFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR
Ga0207527_102157Ga0207527_1021571F041421MGKLGITVVAAFALIFSAPAAADPPTRVVQPVDRTTTIPAGALCPFEFVVRSEGFRTTTTFTNADGSLNGFTIHLTSWHTTYTNPANGKTLRVTFSGPVIVEALPDGRALVRIPGNDPRIVARSEGPIYTDSGLIVYIAPDTVNWDVQLDVLHLAGGRRESEDFVAAVCGALA
Ga0207527_102528Ga0207527_1025281F019338ADRQWRPIFRLGVLGSMPAMRRTEAVLTAGAVACLAFVSIVYPVFAQDVDPRCKDIFDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207527_102977Ga0207527_1029771F052029LALNFRSILPVDSVAEQEINNTALSEQFVTIGAASLALLVVAAIAVLIG
Ga0207527_103038Ga0207527_1030381F020078MRAGIRFCWQSGAIALAAIIFAFLVPGVALCKLVSLASIASAITITTFVAGFGLYLAGHLIEKRDPQCERVDHYLQASIPVTGAGLLWLHVILQTGPWRDRSIEPGVAVVIV
Ga0207527_103210Ga0207527_1032101F075090QKATALKSDEVPDGVSGDRVWRIADNLFTISVLPKDQVPAEIGDLNDLIVGGNAQKCRGDFFAGAMLDVVESTTIARAYTTCQTQQAATSTYYFAMPRKQGGGLYLTKIIATGVEVPPTIERAIKELDAKVRGVITAALARL
Ga0207527_103278Ga0207527_1032782F073997MLSSGIESFALINEVGAQISPSERLHSLLEQIVRSEVRKLAISLMFPLL
Ga0207527_103342Ga0207527_1033422F072513VIPNRRWGLDAVGVVVNHIMTAGIAAHAIIVNIMSHTAVIFSAIGYEFSCRYINFQI
Ga0207527_103484Ga0207527_1034841F056934WRVVQLKDAIEKFRDGPEGLEELVEALTAKFTPGNAMLLREAIAKQKSLQEVQTAADNYLKKRKNVAQWPTKQLEPELVRALVDYRSRLHKEDDWLLSRTGMREVASDFNLIHDYASQTKDLDAQLEVYGSLFLTQAQSAEFKSKSEEERKVYLESHAADKLEVLWYFVVSLCRLLQTKDYQLTPEEAYW
Ga0207527_103550Ga0207527_1035502F031184MADLPKLNVVIANNFGHLPMFVGAERGFFKTQGVDAS
Ga0207527_103784Ga0207527_1037842F101509MSSGDKYLEMALDLLARAASETNAVRRAGLEALAESYTHMGAQANGHTIDRAGSPA
Ga0207527_103889Ga0207527_1038891F078804MNFVYATLCSVAVLVLCGATAPAFGYVKKAPTNQSAGKAIKKQASVFDSDGYRLVSPNSTMRCAQTLR
Ga0207527_104355Ga0207527_1043551F000268MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYHDSTTRPKTDIESFTVSTRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMIFPDSFDQ
Ga0207527_104420Ga0207527_1044202F038225MKRFSLALLGAVGAFFVLTPAQAADYRVVQYNDTKICQVVDMAGLFKPIRTNYTVLTKKSIPTFDAAMKARADVSKKAKCTFL
Ga0207527_104743Ga0207527_1047431F009828MDFGRSADEQAFADEVRAFLRAHPPATFPADGTDAGYGSGAHSRAFLGALGE
Ga0207527_104934Ga0207527_1049342F012929MIRFAAVLVGAAVLFGLEQQFGVQLYLAIPAAIAAYFATLIALTLAFGSGNQTK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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