Sample 3300026734

Basic Information
IMG/M Taxon OID	3300026734 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0054803 \| Ga0208211
Sample Name	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026734 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053063 | Gp0054803 | Ga0208211

Sample Name

Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	21938783
Sequencing Scaffolds	33
Novel Protein Genes	36
Associated Families	35

Dataset Contents

Total Genome Size

21938783

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
Not Available	15
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiomargarita → Candidatus Thiomargarita nelsonii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiomargarita → Candidatus Thiomargarita nelsonii

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae

All Organisms → cellular organisms → Bacteria → Acidobacteria

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → fertilized soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Willamette National Forest, Oregon, USA
Coordinates	Lat. (^o)	44.20517707	Long. (^o)	-122.1284473	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Willamette National Forest, Oregon, USA

Coordinates

Lat. (^o)

44.20517707

Long. (^o)

-122.1284473

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001854	Metagenome / Metatranscriptome	626	Y
F002553	Metagenome / Metatranscriptome	549	Y
F002592	Metagenome / Metatranscriptome	545	Y
F002784	Metagenome / Metatranscriptome	530	Y
F003018	Metagenome / Metatranscriptome	513	Y
F003343	Metagenome / Metatranscriptome	493	Y
F003416	Metagenome / Metatranscriptome	488	Y
F003614	Metagenome / Metatranscriptome	477	Y
F005677	Metagenome / Metatranscriptome	393	Y
F006234	Metagenome / Metatranscriptome	378	Y
F008837	Metagenome / Metatranscriptome	327	Y
F010953	Metagenome / Metatranscriptome	297	Y
F013399	Metagenome / Metatranscriptome	271	Y
F014334	Metagenome / Metatranscriptome	264	Y
F014522	Metagenome / Metatranscriptome	262	Y
F020230	Metagenome / Metatranscriptome	225	N
F025807	Metagenome / Metatranscriptome	200	Y
F028611	Metagenome / Metatranscriptome	191	N
F031187	Metagenome / Metatranscriptome	183	Y
F037914	Metagenome	167	N
F041877	Metagenome / Metatranscriptome	159	N
F045938	Metagenome	152	Y
F049535	Metagenome / Metatranscriptome	146	N
F052154	Metagenome / Metatranscriptome	143	N
F057773	Metagenome / Metatranscriptome	136	Y
F061090	Metagenome / Metatranscriptome	132	Y
F064058	Metagenome / Metatranscriptome	129	N
F071679	Metagenome / Metatranscriptome	122	N
F077546	Metagenome / Metatranscriptome	117	Y
F086097	Metagenome / Metatranscriptome	111	N
F087468	Metagenome / Metatranscriptome	110	N
F087605	Metagenome / Metatranscriptome	110	Y
F092648	Metagenome / Metatranscriptome	107	Y
F100025	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208211_100007	All Organisms → cellular organisms → Bacteria	3623	Open in IMG/M
Ga0208211_100071	Not Available	2057	Open in IMG/M
Ga0208211_100095	All Organisms → cellular organisms → Bacteria	1916	Open in IMG/M
Ga0208211_100113	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
Ga0208211_100136	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
Ga0208211_100214	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
Ga0208211_100273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1413	Open in IMG/M
Ga0208211_100360	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1300	Open in IMG/M
Ga0208211_100479	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1181	Open in IMG/M
Ga0208211_100558	Not Available	1117	Open in IMG/M
Ga0208211_100612	Not Available	1082	Open in IMG/M
Ga0208211_100656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1054	Open in IMG/M
Ga0208211_100867	Not Available	949	Open in IMG/M
Ga0208211_100876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
Ga0208211_101079	Not Available	884	Open in IMG/M
Ga0208211_101444	Not Available	808	Open in IMG/M
Ga0208211_101566	Not Available	784	Open in IMG/M
Ga0208211_102126	Not Available	704	Open in IMG/M
Ga0208211_102365	Not Available	678	Open in IMG/M
Ga0208211_102368	Not Available	678	Open in IMG/M
Ga0208211_102943	Not Available	628	Open in IMG/M
Ga0208211_103332	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	604	Open in IMG/M
Ga0208211_103375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiomargarita → Candidatus Thiomargarita nelsonii	602	Open in IMG/M
Ga0208211_103601	Not Available	588	Open in IMG/M
Ga0208211_103702	Not Available	582	Open in IMG/M
Ga0208211_104232	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
Ga0208211_105036	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Candidatus Methylacidithermus → Candidatus Methylacidithermus pantelleriae	524	Open in IMG/M
Ga0208211_105168	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
Ga0208211_105313	Not Available	515	Open in IMG/M
Ga0208211_105334	Not Available	514	Open in IMG/M
Ga0208211_105434	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
Ga0208211_105677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	503	Open in IMG/M
Ga0208211_105704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208211_100007	Ga0208211_1000072	F003343	MKLSSWDKQLGLVSPRESAASQSDQTNNPSKNKVRNEVGLDVSHHARISQRGGEMLFSLTSFFTARHSRNQTLS
Ga0208211_100071	Ga0208211_1000712	F031187	MGWMMAGMLTQLPLPLLPAGAAEIAPGVGLVTGGGGG
Ga0208211_100095	Ga0208211_1000952	F003416	MGPLPFASSQNEEIDFAAERRWENEGGNPGQLQQSLCDDRKETPPPRGTLKAFSHEVNGTCT
Ga0208211_100095	Ga0208211_1000953	F002553	MHLIQFREIMRDAEVAYAIHPIVRKYLLAAKDTTKALIACGVPRAANVAQITSAWI
Ga0208211_100113	Ga0208211_1001133	F003018	MADRDAWEKAESISKIFAAVLIPVVLGIASLYANQTLEKSKTRDELLKQAVDVVFLSKSDQMAGADKSFESRRAHRSHWLEIYNSLSDVKLSDEFIAIMMEQDARADGTALYWSENLPGLIPNAERTRGAESTNEDELGHGWVAVGHLVSERYSDLNFNVPLNAKERDGTLKPHEIIRARWSVTLRSNSRNLEDRQGYTGTSLGLLWGGECAKVMDSRLDGRLQTWAFIEIVQCPLTTESDPGFERRAMSAVRSLIR
Ga0208211_100136	Ga0208211_1001361	F028611	MSEGTKAVLDDLKHAGEFTKIENTAIVYVLRGWFGSLSAIPGALEAGDDAWAFTTLQEHFDSKLNPDPTKRTPEQVNILGELQKKAKETQDRVDEILGAKSDEDERINKLVDAFVEQLVKNPPERAIPAT
Ga0208211_100214	Ga0208211_1002142	F045938	MDFTESCETSLDWKSGPGICFCLLMPEGTDSRFYTGMAAAFGAAPRQTLHNARKGYLRILYPYHPYYGQTFEVFGSNGGLRDLVYIRMPNNATRGIPAWMFDEAICASIRCADRPTIDCRALLRLAQLLDLQAESRSIGGHESSIQESKIASKISSSSADTGAGQVAFRRSVAKRRSK
Ga0208211_100273	Ga0208211_1002731	F061090	MTPWFRLTLICCVLLCLFLGLTQAVDWNYQPVVSSGSLVDRATNASDSPTSSVVGSMAFHLARARPFGSLVLDCGLTVGNIGPPGQENHGPPKPMDLGKLPARAGNSNQRHRATLSKKLLVFSRKIEESGFCISL
Ga0208211_100360	Ga0208211_1003602	F000268	MLMRVVAVMLLLSAGIAVEAVSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFASDGHGGTSGVTFGFDKNGRMTFPDSFDR
Ga0208211_100479	Ga0208211_1004793	F005677	MNRCLAGFLVCSMLVVSGVRASDNWLQLNNTHGWSISYPASWEAYVMQAPDSGPELSIRESDNVNFDGPKDCYERKARCGHFQIYSASTTPQAELKKYVDEETQNQKIISKEAGQLDGMPAYFIRLPEDQRLVIVKSKSLIFHISYGPND
Ga0208211_100558	Ga0208211_1005582	F014334	MKITSILIGVLFATAAFLLAQALSPNKGADLSASPSQPRSDDVGKSAPETCDPQTIAKAVKGYTCVVKTKSGSVAWRVEAVISTESRTFRVVKDLKSGLYVSDDMGKHSHESAKKENLCQLPDYSNQRGNLTSVTWRLPSGYPRSLNGKNGFPNQDSDFVILEDDGIRQVVSGVASKYFISSSEAGKISDYMSYGFDGEFGGIDAGCNGNGMASLRCVAQ
Ga0208211_100612	Ga0208211_1006122	F002784	MNEFTDKNEQAFLDACGAIGVKPNAMVNTQKERYLVSEFLKNPVSWLETEILYHSYTTRGEAQEVANGIDRMISEGAPVGQSNLFPRPKHSSALSDTAFGS
Ga0208211_100656	Ga0208211_1006561	F092648	MILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVRWH
Ga0208211_100867	Ga0208211_1008672	F003614	MKPSELPGSRRLYRLTNRALAQIRELWQYAGEDELPPDSLLQAQVEALRILHIDVPLSAKRQFQLFCSEHFPGLADILDGLATDQLWALLSMRVQLADSDQPHAQSAAVRFGGLGRRYVLVVFDDRPVGLLSHADGSGLLPEARPKLTALSWEEIRLALMLDIGSN
Ga0208211_100876	Ga0208211_1008761	F002592	HIRLSPRDDAYERLCILTMPLSLGLLRLMLADTPLPRGSGATLAGVGTLSEGFERFVASPLQPRRLRAMGRTV
Ga0208211_101079	Ga0208211_1010791	F086097	VAEKVKKPRGVATADLIQQYEGKRALLKTWESLRAETQLQENDYIIALKSRLRNVRNYLLHRKDPIANI
Ga0208211_101444	Ga0208211_1014442	F006234	GLASCFLIVSCTVGPTVPKGQRTIQGKGSEALTNEGDPLLNGGIDPRKVPIEFAKGYTKGISDQVKRTYWERQESQRSADQDFQGRTRYYDATIPERQSADGVIRVQRQVIIPIVE
Ga0208211_101566	Ga0208211_1015661	F020230	MSNPHLYRRFKLLRLGGIPPPKPVGGFVVGVPTKDVRTFQTENPTVAIDGVFLKLVSADELDEVRRRLQIPLGTDLKYQQSRYQANAETMKGNATFEWRNGNKYWIEPKGYNKPL
Ga0208211_102126	Ga0208211_1021262	F052154	MNAYDGCHITIQIPVDFGTEKEKELRQSFTQELPGLTLTIQGGESVAKPRIGAISIDDFAYVRSAKAAEEWRNAAEKAELKNDAFPVVDWAASRTLRQFLQGHK
Ga0208211_102365	Ga0208211_1023651	F100025	VATSGENTIGTLMKEDTETLAELMFHADQFCSKVEDAIKDVAPTPEEKDLRLKIGQCRNQLAYLQELFNDGKLTIENPRVRAEFRQLIVALLWIAFYARSAIDFRIFRMLVMIESGFTYLLVSRQPGQENCST
Ga0208211_102368	Ga0208211_1023682	F064058	MNEKDFINLMHDVERHEDAVTEDAKEIRGLKVDVWELSNLVRLLAAFVPRPVSGMVEEKAAIEFETQLQAVLQKHGIER
Ga0208211_102943	Ga0208211_1029431	F037914	MAMDFDSLYAEALNAWPPEVRLPVRSFVTGHLVDGLTDLEHSIAAQWAGSPQEVLMVTLNWTILRAVHAAFATRQSVVMAELPSVRARFETELRQLLKRPRWGESDCRVIREYFGE
Ga0208211_103332	Ga0208211_1033322	F013399	MVIEDQKAAKIQELLKQLSSADTFQSVAITRQIRDIATENPKQEPGTIGNPVAINPTQR
Ga0208211_103375	Ga0208211_1033751	F057773	VKSSDKGLSAVALIFELASLDLARHQRQPRRHALQRLNAGHFVDGDRAMSVIRTGCGLVNRTDIRALAIKGGIRFRGQPVTDAMGLEVCLFFKKRPTERCEIFGTRPRRMASSAISRWLHWLIGRSLSDGFSHVIATTAQICSGVYVAGAPDRGASARRSQTVHLSSASRHRLRQYRAVFGQTPSSRALLRTPIPSTACK
Ga0208211_103601	Ga0208211_1036011	F001854	VSCMKTFLLAVFTLCFALSIAALSPDATNQAPRKTQAIAGARLTTIMGTIYEDGDKLRFVTDQRAWRVDNPEILKGHEGHYVHANAYVYPETNSIHITEVKLPTPSETEKDDIK
Ga0208211_103601	Ga0208211_1036012	F025807	MGTMGKKKSKKQWDKATLAEVTKEMAKPRVARSAREHSHIFPEDITRLRKA
Ga0208211_103702	Ga0208211_1037021	F041877	SITGKAEELDRELPGQLATFTESIARTGSNLDELKTQHAAAVRALEAENKKKLDDKKKGNGSKTASTPPNPNPPTEFKDGKPVFGGKTTPPTGENRSLFDTATDQADADLVEQPAEDDATAPPPQHPSASASSYPD
Ga0208211_104232	Ga0208211_1042322	F087605	AQHVDKDTQNEFGDTALIIASRNGNTALVQRLLSAGASTRLRNKNKASAADVAAARAFTAIADLLKNA
Ga0208211_104847	Ga0208211_1048471	F071679	VIANQVDAALLTAGEWIRIQQQKGVQVLATLSDSVPPLPLEICVVTTKMINEHPDVVQAFVNAMLNAARHARTPEGKQAYIKIARGVDPTGYTDQQYDQLYDFYFGPKSNPLAMDPNGGLYPEMYVANMKSMLEEKMIDAMMPLDKLVDARFVDQYLGNNGWYDVKTNKGGNYLRD
Ga0208211_105036	Ga0208211_1050361	F049535	MRRHIAGSRASTKSIHEPAWSLHRFASLLSTFAAVAGVPRQTSRSIKPRERDLRCLRLFFGPVFNEANEPSSTCRLRFQQ
Ga0208211_105168	Ga0208211_1051681	F002592	MTENPEASVLTARRAAQHFRLFRANDAYEHLCILTLLPSLAPLHLMLADTPWPHGFGATLANVGPLSEGFERSVASPLQPRRLRAMGRTV
Ga0208211_105313	Ga0208211_1053131	F087468	MTSDSRLVLPLIESSDLSDEDRKLVKAILWRDGATPVITTHEQYIRYRRIVAELSRKYGAAARNSLLFIRSPDGVLLTSLEARMLA
Ga0208211_105334	Ga0208211_1053341	F008837	MLHATRSWHASCVTSTEGNFMELMEVYHEAMAKWIIARATGGKCEGSDFVFDLIESAIREEATEILLTPVQESDMVRMDFGRLHCYYRQPKITRAQFAYLAIYLVLIGNVAAEEARTERLFRGSDERLYNLQFGKIRLPDSEPAVVIYIEPLRP
Ga0208211_105434	Ga0208211_1054341	F010953	LLEWFFGWDSRRHVNSFTLLHPYAALFAHAAAEFTLFVVLAGLWYFRRWARLIFILALALSVVDSAFWPYRGLSLPPSFVLAIGWCVVLLNGAIVAMSFLPPVRDVFATSDLTNR
Ga0208211_105677	Ga0208211_1056771	F077546	MNNHTTYALLVQSQEKGRAIMETAVYIACILSVVVAIFQFAGQPTPDPFAGFNSPPQPTPVVSHHPVETVMDTKS
Ga0208211_105704	Ga0208211_1057041	F014522	MATKKAAVRKILITLGILVAFVIAIVASWIFGGRQISLFVDRFGTIEMTSARINSIVYEGSGTGGILHVNDLALSLNDRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026734: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences